Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00542 * 2 1 4 4 C 1.53000 * 109.47178 * 270.00060 * 3 2 1 5 5 N 1.46902 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00258 * 294.29853 * 5 4 3 7 7 C 1.53238 * 109.34035 * 172.74439 * 6 5 4 8 8 N 1.47084 * 108.51820 * 53.83153 * 7 6 5 9 9 C 1.36939 * 120.87820 * 128.83091 * 8 7 6 10 10 H 1.08001 * 120.00325 * 212.03733 * 9 8 7 11 11 C 1.38816 * 119.99772 * 32.05001 * 9 8 7 12 12 N 1.31612 * 120.00534 * 12.98548 * 11 9 8 13 13 Si 1.86800 * 119.99817 * 192.99494 * 11 9 8 14 14 H 1.48506 * 109.47259 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47573 * 119.99401 * 13 11 9 16 16 H 1.48504 * 109.47167 * 239.99688 * 13 11 9 17 17 C 1.47075 * 118.24144 * 308.81627 * 8 7 6 18 18 C 1.46897 * 110.99635 * 169.99699 * 5 4 3 19 19 C 1.34783 * 120.00084 * 179.97438 * 2 1 3 20 20 O 1.21274 * 120.00323 * 174.71429 * 19 2 1 21 21 C 1.50707 * 119.99745 * 354.99396 * 19 2 1 22 22 H 1.09003 * 109.47075 * 13.96140 * 21 19 2 23 23 F 1.39893 * 109.47278 * 253.96382 * 21 19 2 24 24 C 1.52998 * 109.47268 * 133.96246 * 21 19 2 25 25 F 1.39897 * 109.47172 * 59.99633 * 24 21 19 26 26 F 1.39891 * 109.47529 * 180.02562 * 24 21 19 27 27 F 1.39902 * 109.47090 * 300.00066 * 24 21 19 28 28 H 1.08992 * 109.47635 * 264.48415 * 1 2 3 29 29 H 1.08999 * 109.46808 * 24.48413 * 1 2 3 30 30 H 1.09000 * 109.47131 * 144.48066 * 1 2 3 31 31 H 1.09007 * 109.46817 * 29.99276 * 3 2 1 32 32 H 1.08994 * 109.47766 * 149.99240 * 3 2 1 33 33 H 1.08993 * 109.47047 * 299.99697 * 4 3 2 34 34 H 1.09000 * 109.47106 * 59.99624 * 4 3 2 35 35 H 1.09000 * 109.49324 * 292.70774 * 6 5 4 36 36 H 1.09004 * 109.48869 * 52.79024 * 6 5 4 37 37 H 1.08996 * 109.63067 * 294.12546 * 7 6 5 38 38 H 1.08998 * 109.63007 * 173.53882 * 7 6 5 39 39 H 0.96994 * 120.00491 * 180.02562 * 12 11 9 40 40 H 1.09001 * 109.62434 * 291.47814 * 17 8 7 41 41 H 1.08996 * 109.79441 * 170.98869 * 17 8 7 42 42 H 1.09004 * 109.49672 * 307.21259 * 18 5 4 43 43 H 1.09003 * 109.49735 * 67.29596 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9827 -1.4425 6 6 2.3671 4.0634 -0.8783 7 6 3.2240 5.3249 -0.7284 8 7 3.8421 5.6270 -2.0284 9 6 3.7464 6.8773 -2.5785 10 1 3.7111 6.9940 -3.6517 11 6 3.6949 7.9950 -1.7569 12 7 3.9918 7.8869 -0.4792 13 14 3.2038 9.6526 -2.4645 14 1 2.9218 9.5076 -3.9153 15 1 1.9875 10.1465 -1.7704 16 1 4.3123 10.6216 -2.2706 17 6 4.5660 4.5507 -2.7217 18 6 3.6562 3.3196 -2.7930 19 6 2.1389 -1.1672 0.0005 20 8 3.3478 -1.1696 -0.0962 21 6 1.3896 -2.4698 0.1150 22 1 0.3282 -2.2951 -0.0611 23 9 1.5685 -2.9996 1.3973 24 6 1.9231 -3.4581 -0.9240 25 9 3.2854 -3.6823 -0.6980 26 9 1.2273 -4.6670 -0.8182 27 9 1.7442 -2.9284 -2.2064 28 1 -0.3634 -0.0988 1.0228 29 1 -0.3633 0.9353 -0.4259 30 1 -0.3633 -0.8364 -0.5970 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5002 1.8407 -1.9563 35 1 1.5291 4.2698 -1.5441 36 1 1.9900 3.7616 0.0989 37 1 4.0017 5.1530 0.0156 38 1 2.5954 6.1599 -0.4190 39 1 3.9555 8.6677 0.0950 40 1 5.4727 4.3043 -2.1691 41 1 4.8275 4.8716 -3.7300 42 1 4.2142 2.4784 -3.2045 43 1 2.8003 3.5364 -3.4322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732063108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -183.274423 kcal Electronic energy + Delta-G solvation = -30989.998646 eV Core-core repulsion = 25992.512961 eV Total energy + Delta-G solvation = -4997.485685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.76377 -48.90730 -48.15342 -47.96493 -40.38140 -38.20872 -36.30929 -34.45146 -32.15406 -31.27271 -29.98581 -29.30096 -27.31285 -26.20162 -24.59549 -23.33242 -22.57217 -21.65420 -20.33663 -19.40738 -19.18160 -19.10321 -18.63854 -17.83450 -17.10630 -16.86931 -16.28098 -15.56421 -15.44005 -14.99711 -14.87528 -14.82846 -14.71655 -14.57256 -14.53324 -14.22501 -14.18915 -14.16995 -13.76712 -13.59572 -13.58042 -13.45957 -13.34266 -13.04631 -12.83807 -12.41103 -12.00909 -11.94197 -11.44550 -11.09126 -11.06602 -10.79357 -10.45629 -10.43634 -10.29635 -10.08529 -9.83236 -9.64695 -9.17266 -8.53381 -7.88564 -6.60324 -5.80142 -3.27222 1.47442 1.82278 2.23983 2.91811 3.19903 3.32136 3.34567 3.42549 3.44076 3.44630 3.90689 4.26050 4.33116 4.47412 4.51209 4.80181 4.91150 5.13152 5.14843 5.38028 5.39084 5.47582 5.63139 5.82369 5.87169 5.94654 6.04344 6.15139 6.16924 6.30250 6.51044 6.66109 6.67942 6.95081 7.19904 7.35315 7.54496 7.60484 7.67013 7.80039 8.45235 9.20561 9.81928 10.43784 11.28654 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002226 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.426821 B =12576.227887 C =12877.608431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.597 5.597 3 C 0.117 3.883 4 C 0.042 3.958 5 N -0.529 5.529 6 C 0.032 3.968 7 C 0.181 3.819 8 N -0.595 5.595 9 C -0.255 4.255 10 H 0.064 0.936 11 C 0.005 3.995 12 N -0.902 5.902 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.289 1.289 17 C 0.149 3.851 18 C 0.047 3.953 19 C 0.491 3.509 20 O -0.484 6.484 21 C 0.034 3.966 22 H 0.147 0.853 23 F -0.152 7.152 24 C 0.446 3.554 25 F -0.153 7.153 26 F -0.169 7.169 27 F -0.166 7.166 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -22.403 1.662 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.331 5.331 3 C -0.005 4.005 4 C -0.087 4.087 5 N -0.254 5.254 6 C -0.097 4.097 7 C 0.055 3.945 8 N -0.318 5.318 9 C -0.384 4.384 10 H 0.081 0.919 11 C -0.194 4.194 12 N -0.546 5.546 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.216 1.216 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.273 3.727 20 O -0.356 6.356 21 C -0.007 4.007 22 H 0.165 0.835 23 F -0.132 7.132 24 C 0.390 3.610 25 F -0.135 7.135 26 F -0.150 7.150 27 F -0.148 7.148 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.296 -22.317 2.031 24.661 hybrid contribution -1.104 0.718 -0.840 1.562 sum -11.400 -21.599 1.191 24.452 Atomic orbital electron populations 1.22079 0.78749 1.04364 1.02683 1.47818 1.07487 1.05907 1.71885 1.21727 0.98297 0.82219 0.98225 1.22361 0.96947 0.93644 0.95752 1.61864 1.38920 1.01608 1.23054 1.22993 0.95585 0.93762 0.97411 1.20787 0.94397 0.91820 0.87497 1.44057 1.59654 1.07348 1.20756 1.19189 1.45449 0.82485 0.91320 0.91880 1.25184 1.00167 0.97820 0.96199 1.70004 1.50982 1.29077 1.04521 0.86226 0.77863 0.84180 0.78506 1.20267 1.21583 1.21601 1.20989 0.92949 0.87361 0.96511 1.22615 0.98580 0.99131 0.87892 1.20011 0.88283 0.84759 0.79640 1.90890 1.12762 1.86063 1.45869 1.22933 1.05246 0.91992 0.80578 0.83536 1.93022 1.96946 1.86557 1.36681 1.20327 0.77529 0.81196 0.81905 1.93324 1.31133 1.94780 1.94213 1.93251 1.78922 1.46905 1.95958 1.93261 1.95096 1.85996 1.40426 0.91236 0.89147 0.91131 0.89311 0.88359 0.90889 0.95405 0.95670 0.92142 0.95351 0.90012 0.93630 0.95556 0.92562 0.91967 0.95461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 9.90 59.85 0.59 0.90 16 2 N -0.60 -5.57 2.87 -181.58 -0.52 -6.09 16 3 C 0.12 1.37 5.27 -4.04 -0.02 1.35 16 4 C 0.04 0.58 5.29 -3.82 -0.02 0.56 16 5 N -0.53 -9.18 4.63 -234.32 -1.08 -10.26 16 6 C 0.03 0.58 5.46 -3.70 -0.02 0.56 16 7 C 0.18 4.27 5.36 -3.60 -0.02 4.25 16 8 N -0.59 -15.00 3.01 -172.01 -0.52 -15.52 16 9 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 10 H 0.06 1.71 7.86 -52.49 -0.41 1.29 16 11 C 0.01 0.15 4.99 -17.43 -0.09 0.06 16 12 N -0.90 -26.01 11.32 55.49 0.63 -25.39 16 13 Si 0.90 21.46 29.57 -169.99 -5.03 16.43 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.15 3.20 6.69 -3.60 -0.02 3.17 16 18 C 0.05 0.85 5.62 -3.70 -0.02 0.83 16 19 C 0.49 5.42 6.72 -10.98 -0.07 5.35 16 20 O -0.48 -7.37 15.26 5.56 0.08 -7.28 16 21 C 0.03 0.27 3.44 -27.88 -0.10 0.17 16 22 H 0.15 0.53 5.56 -51.93 -0.29 0.24 16 23 F -0.15 -1.41 17.03 2.25 0.04 -1.37 16 24 C 0.45 4.21 2.87 37.16 0.11 4.31 16 25 F -0.15 -1.87 15.96 2.25 0.04 -1.84 16 26 F -0.17 -1.45 17.30 2.25 0.04 -1.42 16 27 F -0.17 -1.60 17.02 2.25 0.04 -1.56 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.41 8.03 -51.93 -0.42 0.00 16 30 H 0.07 0.18 6.28 -51.93 -0.33 -0.14 16 31 H 0.09 0.94 6.33 -51.92 -0.33 0.61 16 32 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 33 H 0.07 1.07 7.97 -51.93 -0.41 0.66 16 34 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.95 6.16 -51.93 -0.32 0.63 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 2.12 6.42 -51.93 -0.33 1.78 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 42 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -32.67 361.71 -6.39 -39.06 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.73 Total: -4.61 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 0.17 Total: 14.40 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.50 Total: -57.26 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.08 Total: -7.28 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.15 Total: -6.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -6.39 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732063108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.212 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds