Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00542 * 2 1 4 4 C 1.53000 * 109.47178 * 270.00060 * 3 2 1 5 5 N 1.46902 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00258 * 294.29853 * 5 4 3 7 7 C 1.53238 * 109.34035 * 172.74439 * 6 5 4 8 8 N 1.47084 * 108.51820 * 53.83153 * 7 6 5 9 9 C 1.36939 * 120.87820 * 128.83091 * 8 7 6 10 10 H 1.08001 * 120.00325 * 212.03733 * 9 8 7 11 11 C 1.38816 * 119.99772 * 32.05001 * 9 8 7 12 12 N 1.31612 * 120.00534 * 12.98548 * 11 9 8 13 13 Si 1.86800 * 119.99817 * 192.99494 * 11 9 8 14 14 H 1.48506 * 109.47259 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47573 * 119.99401 * 13 11 9 16 16 H 1.48504 * 109.47167 * 239.99688 * 13 11 9 17 17 C 1.47075 * 118.24144 * 308.81627 * 8 7 6 18 18 C 1.46897 * 110.99635 * 169.99699 * 5 4 3 19 19 C 1.34783 * 120.00084 * 179.97438 * 2 1 3 20 20 O 1.21274 * 120.00323 * 174.71429 * 19 2 1 21 21 C 1.50707 * 119.99745 * 354.99396 * 19 2 1 22 22 H 1.09003 * 109.47075 * 13.96140 * 21 19 2 23 23 F 1.39893 * 109.47278 * 253.96382 * 21 19 2 24 24 C 1.52998 * 109.47268 * 133.96246 * 21 19 2 25 25 F 1.39897 * 109.47172 * 59.99633 * 24 21 19 26 26 F 1.39891 * 109.47529 * 180.02562 * 24 21 19 27 27 F 1.39902 * 109.47090 * 300.00066 * 24 21 19 28 28 H 1.08992 * 109.47635 * 264.48415 * 1 2 3 29 29 H 1.08999 * 109.46808 * 24.48413 * 1 2 3 30 30 H 1.09000 * 109.47131 * 144.48066 * 1 2 3 31 31 H 1.09007 * 109.46817 * 29.99276 * 3 2 1 32 32 H 1.08994 * 109.47766 * 149.99240 * 3 2 1 33 33 H 1.08993 * 109.47047 * 299.99697 * 4 3 2 34 34 H 1.09000 * 109.47106 * 59.99624 * 4 3 2 35 35 H 1.09000 * 109.49324 * 292.70774 * 6 5 4 36 36 H 1.09004 * 109.48869 * 52.79024 * 6 5 4 37 37 H 1.08996 * 109.63067 * 294.12546 * 7 6 5 38 38 H 1.08998 * 109.63007 * 173.53882 * 7 6 5 39 39 H 0.96994 * 120.00491 * 180.02562 * 12 11 9 40 40 H 1.09001 * 109.62434 * 291.47814 * 17 8 7 41 41 H 1.08996 * 109.79441 * 170.98869 * 17 8 7 42 42 H 1.09004 * 109.49672 * 307.21259 * 18 5 4 43 43 H 1.09003 * 109.49735 * 67.29596 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9827 -1.4425 6 6 2.3671 4.0634 -0.8783 7 6 3.2240 5.3249 -0.7284 8 7 3.8421 5.6270 -2.0284 9 6 3.7464 6.8773 -2.5785 10 1 3.7111 6.9940 -3.6517 11 6 3.6949 7.9950 -1.7569 12 7 3.9918 7.8869 -0.4792 13 14 3.2038 9.6526 -2.4645 14 1 2.9218 9.5076 -3.9153 15 1 1.9875 10.1465 -1.7704 16 1 4.3123 10.6216 -2.2706 17 6 4.5660 4.5507 -2.7217 18 6 3.6562 3.3196 -2.7930 19 6 2.1389 -1.1672 0.0005 20 8 3.3478 -1.1696 -0.0962 21 6 1.3896 -2.4698 0.1150 22 1 0.3282 -2.2951 -0.0611 23 9 1.5685 -2.9996 1.3973 24 6 1.9231 -3.4581 -0.9240 25 9 3.2854 -3.6823 -0.6980 26 9 1.2273 -4.6670 -0.8182 27 9 1.7442 -2.9284 -2.2064 28 1 -0.3634 -0.0988 1.0228 29 1 -0.3633 0.9353 -0.4259 30 1 -0.3633 -0.8364 -0.5970 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5002 1.8407 -1.9563 35 1 1.5291 4.2698 -1.5441 36 1 1.9900 3.7616 0.0989 37 1 4.0017 5.1530 0.0156 38 1 2.5954 6.1599 -0.4190 39 1 3.9555 8.6677 0.0950 40 1 5.4727 4.3043 -2.1691 41 1 4.8275 4.8716 -3.7300 42 1 4.2142 2.4784 -3.2045 43 1 2.8003 3.5364 -3.4322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732063108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = -205.443175 kcal Electronic energy + Delta-G solvation = -30990.959955 eV Core-core repulsion = 25992.512961 eV Total energy + Delta-G solvation = -4998.446994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.49601 -49.59554 -48.87445 -48.73785 -41.22752 -39.69409 -37.30097 -36.04783 -33.58197 -32.49397 -31.66931 -30.46738 -28.17888 -27.49727 -25.70225 -24.75267 -24.23130 -22.90445 -21.14462 -20.85235 -20.11556 -19.87458 -19.36147 -18.75472 -18.53134 -17.84617 -17.31894 -16.86284 -16.36504 -16.24963 -16.01024 -15.71932 -15.62728 -15.55916 -15.42455 -15.29895 -15.26574 -15.04577 -14.99535 -14.96775 -14.95393 -14.68622 -14.17651 -13.99851 -13.96899 -13.38814 -13.24712 -13.03956 -12.94833 -12.68089 -12.63503 -12.42100 -12.12122 -12.01383 -11.87646 -11.57780 -11.39425 -11.23446 -10.61341 -9.98433 -9.27052 -8.61718 -7.88129 -5.39455 0.72451 1.07122 1.46037 1.47624 1.50550 1.58420 2.21856 2.49558 2.53379 2.62516 2.86228 3.06812 3.27113 3.28392 3.61838 3.67600 3.86583 4.02027 4.14192 4.26678 4.33953 4.43643 4.52604 4.58503 4.65515 4.70421 4.75284 4.85519 4.87819 4.94476 5.03441 5.19078 5.22057 5.34182 5.62319 5.68235 5.93232 6.15505 6.23384 6.39762 6.59233 7.14329 7.82130 8.39597 9.18543 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002226 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.426821 B =12576.227887 C =12877.608431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.590 5.590 3 C 0.123 3.877 4 C 0.052 3.948 5 N -0.544 5.544 6 C 0.051 3.949 7 C 0.187 3.813 8 N -0.614 5.614 9 C -0.267 4.267 10 H 0.064 0.936 11 C -0.047 4.047 12 N -0.934 5.934 13 Si 0.970 3.030 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.293 1.293 17 C 0.144 3.856 18 C 0.059 3.941 19 C 0.484 3.516 20 O -0.538 6.538 21 C 0.045 3.955 22 H 0.199 0.801 23 F -0.158 7.158 24 C 0.442 3.558 25 F -0.175 7.175 26 F -0.163 7.163 27 F -0.168 7.168 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.090 0.910 37 H -0.004 1.004 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.010 0.990 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -23.460 1.083 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.322 5.322 3 C 0.000 4.000 4 C -0.077 4.077 5 N -0.270 5.270 6 C -0.078 4.078 7 C 0.061 3.939 8 N -0.338 5.338 9 C -0.397 4.397 10 H 0.082 0.918 11 C -0.243 4.243 12 N -0.580 5.580 13 Si 0.798 3.202 14 H -0.191 1.191 15 H -0.213 1.213 16 H -0.220 1.220 17 C 0.019 3.981 18 C -0.070 4.070 19 C 0.267 3.733 20 O -0.414 6.414 21 C 0.004 3.996 22 H 0.216 0.784 23 F -0.139 7.139 24 C 0.387 3.613 25 F -0.157 7.157 26 F -0.144 7.144 27 F -0.149 7.149 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.108 0.892 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.074 -23.406 1.439 26.849 hybrid contribution -0.222 1.005 -0.672 1.229 sum -13.297 -22.401 0.768 26.061 Atomic orbital electron populations 1.22500 0.75514 1.06185 1.04849 1.47893 1.09331 1.04483 1.70501 1.21504 0.97971 0.83819 0.96695 1.22305 0.97034 0.91133 0.97223 1.61765 1.39910 1.02654 1.22655 1.22661 0.94218 0.91736 0.99212 1.20581 0.93620 0.93450 0.86234 1.44357 1.60558 1.07649 1.21253 1.19505 1.44924 0.83732 0.91562 0.91845 1.25956 1.00535 1.01235 0.96540 1.70164 1.52295 1.29788 1.05735 0.85177 0.77146 0.79633 0.78270 1.19105 1.21292 1.21962 1.21101 0.93025 0.88059 0.95956 1.22408 0.98092 0.97972 0.88550 1.20538 0.87913 0.86057 0.78792 1.90870 1.15169 1.86963 1.48359 1.23050 1.07295 0.89590 0.79632 0.78405 1.93011 1.97125 1.86501 1.37214 1.20570 0.76682 0.81760 0.82289 1.93281 1.33067 1.94974 1.94360 1.93263 1.78564 1.46663 1.95940 1.93255 1.94998 1.86008 1.40639 0.89128 0.88315 0.88229 0.87643 0.91081 0.91780 0.93497 0.95510 0.89172 0.98542 0.92860 0.93974 0.97177 0.92206 0.89821 0.95252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 9.90 127.77 1.26 1.52 16 2 N -0.59 -9.31 2.87 -846.78 -2.43 -11.75 16 3 C 0.12 2.64 5.27 86.38 0.46 3.09 16 4 C 0.05 1.31 5.29 86.30 0.46 1.77 16 5 N -0.54 -18.19 4.63 -895.25 -4.14 -22.33 16 6 C 0.05 1.80 5.46 86.38 0.47 2.27 16 7 C 0.19 9.00 5.36 86.35 0.46 9.47 16 8 N -0.61 -31.49 3.01 -698.13 -2.10 -33.59 16 9 C -0.27 -14.80 9.59 84.03 0.81 -13.99 16 10 H 0.06 3.44 7.86 -2.91 -0.02 3.41 16 11 C -0.05 -2.61 4.99 84.86 0.42 -2.19 16 12 N -0.93 -55.32 11.32 21.65 0.25 -55.07 16 13 Si 0.97 44.49 29.57 68.60 2.03 46.52 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 C 0.14 6.26 6.69 86.35 0.58 6.84 16 18 C 0.06 2.06 5.62 86.39 0.49 2.55 16 19 C 0.48 9.83 6.72 87.66 0.59 10.42 16 20 O -0.54 -16.39 15.26 -3.01 -0.05 -16.44 16 21 C 0.04 0.59 3.44 29.85 0.10 0.70 16 22 H 0.20 0.46 5.56 -2.39 -0.01 0.44 16 23 F -0.16 -2.60 17.03 44.97 0.77 -1.84 16 24 C 0.44 7.61 2.87 71.98 0.21 7.82 16 25 F -0.18 -4.27 15.96 44.97 0.72 -3.55 16 26 F -0.16 -2.47 17.30 44.97 0.78 -1.70 16 27 F -0.17 -2.91 17.02 44.97 0.77 -2.15 16 28 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.10 0.42 8.03 -2.39 -0.02 0.40 16 30 H 0.10 -0.05 6.28 -2.39 -0.02 -0.07 16 31 H 0.11 1.91 6.33 -2.38 -0.02 1.89 16 32 H 0.07 1.96 7.50 -2.39 -0.02 1.94 16 33 H 0.06 1.77 7.97 -2.39 -0.02 1.75 16 34 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 2.64 6.16 -2.38 -0.01 2.63 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.05 2.84 6.42 -2.39 -0.02 2.82 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 42 H 0.08 2.56 7.99 -2.38 -0.02 2.54 16 43 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -74.39 361.71 3.92 -70.47 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.04 Total: 1.19 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 6.30 Total: 30.24 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -8.44 Total: -122.75 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.05 Total: -16.44 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 3.03 Total: -9.23 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.39 3.92 -70.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732063108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.976 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds