Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36944 * 119.99810 * 2 1 4 4 H 1.08001 * 120.00011 * 201.82201 * 3 2 1 5 5 C 1.38812 * 120.00053 * 21.82402 * 3 2 1 6 6 N 1.31616 * 119.99849 * 15.23091 * 5 3 2 7 7 Si 1.86792 * 119.99978 * 195.23873 * 5 3 2 8 8 H 1.48501 * 109.47324 * 89.99582 * 7 5 3 9 9 H 1.48501 * 109.47036 * 209.99607 * 7 5 3 10 10 H 1.48501 * 109.47455 * 329.99379 * 7 5 3 11 11 C 1.46497 * 120.00177 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47049 * 273.77523 * 11 2 1 13 13 C 1.38254 * 120.00092 * 357.98919 * 12 11 2 14 14 C 1.38213 * 120.00537 * 180.27461 * 13 12 11 15 15 C 1.38268 * 119.99409 * 359.48988 * 14 13 12 16 16 C 1.38209 * 119.99707 * 0.48844 * 15 14 13 17 17 C 1.38215 * 120.00279 * 178.00844 * 12 11 2 18 18 C 1.50695 * 119.99616 * 359.97438 * 17 12 11 19 19 N 1.46501 * 109.47098 * 75.39643 * 18 17 12 20 20 C 1.34780 * 120.00152 * 179.97438 * 19 18 17 21 21 O 1.21520 * 119.99828 * 0.02562 * 20 19 18 22 22 C 1.48156 * 120.00429 * 179.97438 * 20 19 18 23 23 C 1.39970 * 120.88742 * 359.72822 * 22 20 19 24 24 C 1.37982 * 119.13125 * 179.74478 * 23 22 20 25 25 N 1.31912 * 120.97631 * 0.53830 * 24 23 22 26 26 C 1.32172 * 121.96972 * 359.70832 * 25 24 23 27 27 O 1.35688 * 119.62191 * 179.97438 * 26 25 24 28 28 C 1.38895 * 120.75777 * 0.02989 * 26 25 24 29 29 H 1.08999 * 109.46850 * 273.49560 * 1 2 3 30 30 H 1.08995 * 109.47828 * 33.49405 * 1 2 3 31 31 H 1.08995 * 109.46951 * 153.50222 * 1 2 3 32 32 H 0.97003 * 119.99972 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46980 * 153.78114 * 11 2 1 34 34 H 1.08993 * 109.47359 * 33.77792 * 11 2 1 35 35 H 1.08004 * 120.00110 * 0.02562 * 13 12 11 36 36 H 1.07996 * 120.00654 * 179.72021 * 14 13 12 37 37 H 1.07994 * 119.99624 * 180.25299 * 15 14 13 38 38 H 1.08004 * 119.99354 * 179.76725 * 16 15 14 39 39 H 1.09006 * 109.47321 * 195.39400 * 18 17 12 40 40 H 1.08995 * 109.47401 * 315.39204 * 18 17 12 41 41 H 0.96993 * 120.00314 * 359.97438 * 19 18 17 42 42 H 1.07999 * 120.43932 * 359.97438 * 23 22 20 43 43 H 1.08004 * 119.51054 * 180.26952 * 24 23 22 44 44 H 0.96691 * 114.00508 * 270.03170 * 27 26 25 45 45 H 1.07996 * 120.52523 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1716 1.2195 -0.3477 5 6 1.5302 2.3450 0.4469 6 7 0.4146 2.2692 1.1412 7 14 2.2797 4.0123 0.0628 8 1 1.7362 4.5146 -1.2247 9 1 1.9436 4.9681 1.1484 10 1 3.7551 3.8798 -0.0408 11 6 2.1975 -1.2687 -0.0006 12 6 2.3676 -1.7511 1.4170 13 6 1.8951 -0.9878 2.4684 14 6 2.0562 -1.4274 3.7688 15 6 2.6805 -2.6358 4.0176 16 6 3.1524 -3.3990 2.9665 17 6 2.9964 -2.9565 1.6660 18 6 3.5113 -3.7886 0.5200 19 7 4.7410 -3.1896 -0.0046 20 6 5.3836 -3.7666 -1.0393 21 8 4.9426 -4.7835 -1.5374 22 6 6.6270 -3.1606 -1.5702 23 6 7.1477 -1.9860 -1.0149 24 6 8.3109 -1.4558 -1.5343 25 7 8.9272 -2.0334 -2.5475 26 6 8.4693 -3.1403 -3.1061 27 8 9.1413 -3.6940 -4.1467 28 6 7.3074 -3.7425 -2.6409 29 1 -0.3633 0.0627 1.0258 30 1 -0.3634 0.8569 -0.5671 31 1 -0.3633 -0.9197 -0.4585 32 1 -0.0185 3.0792 1.4532 33 1 3.1776 -1.1221 -0.4545 34 1 1.6395 -2.0102 -0.5722 35 1 1.4037 -0.0459 2.2738 36 1 1.6912 -0.8290 4.5903 37 1 2.8027 -2.9813 5.0334 38 1 3.6435 -4.3411 3.1611 39 1 3.7202 -4.7995 0.8700 40 1 2.7599 -3.8253 -0.2687 41 1 5.0929 -2.3777 0.3928 42 1 6.6477 -1.5030 -0.1884 43 1 8.7205 -0.5521 -1.1077 44 1 8.8592 -3.3715 -5.0135 45 1 6.9363 -4.6467 -3.1004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733676300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 18.521679 kcal Electronic energy + Delta-G solvation = -29057.579539 eV Core-core repulsion = 25041.470355 eV Total energy + Delta-G solvation = -4016.109184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98470 -39.72852 -38.83395 -37.26481 -35.63636 -35.03225 -33.05953 -32.01047 -31.12659 -30.41140 -29.94163 -26.82826 -26.10045 -25.58208 -24.27608 -23.66443 -22.22527 -21.06802 -20.93157 -20.04725 -19.15910 -17.68722 -17.11434 -16.81626 -16.18562 -16.00693 -15.81355 -15.61035 -15.44806 -14.91242 -14.51068 -14.41028 -14.20930 -13.84545 -13.68940 -13.38939 -13.23387 -13.02007 -12.67136 -12.47507 -12.34415 -12.22173 -12.04217 -11.62599 -11.39486 -10.95927 -10.83297 -10.59877 -10.55295 -10.42941 -10.34294 -10.21714 -10.09674 -9.93145 -9.74829 -9.29075 -9.15807 -8.64661 -8.38054 -8.09365 -6.93009 -5.85083 -3.30371 0.39302 0.67378 1.63329 1.93544 2.64375 2.98146 3.29395 3.31298 3.38345 3.39500 3.56273 4.23787 4.34316 4.40841 4.45279 4.61699 4.69353 4.85433 5.02494 5.18132 5.25465 5.35703 5.38012 5.45613 5.49018 5.53445 5.67398 5.72671 5.76556 5.95257 6.07505 6.17607 6.24314 6.31015 6.37602 6.49578 6.67389 6.68296 6.85293 7.13574 7.14118 7.27552 7.28669 7.38993 7.54782 7.61027 7.63552 7.72753 7.98860 8.27219 9.11575 9.73893 10.22942 11.20002 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.003543 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.833788 B = 7900.966637 C = 9808.616998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.598 5.598 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.181 3.819 12 C -0.076 4.076 13 C -0.086 4.086 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.708 5.708 20 C 0.557 3.443 21 O -0.532 6.532 22 C -0.068 4.068 23 C -0.149 4.149 24 C 0.124 3.876 25 N -0.490 5.490 26 C 0.306 3.694 27 O -0.480 6.480 28 C -0.129 4.129 29 H 0.030 0.970 30 H 0.045 0.955 31 H -0.002 1.002 32 H 0.254 0.746 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.405 0.595 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.403 0.597 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -10.142 -1.356 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.320 5.320 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.054 3.946 12 C -0.079 4.079 13 C -0.104 4.104 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.132 4.132 17 C -0.132 4.132 18 C 0.046 3.954 19 N -0.360 5.360 20 C 0.343 3.657 21 O -0.409 6.409 22 C -0.079 4.079 23 C -0.169 4.169 24 C -0.032 4.032 25 N -0.209 5.209 26 C 0.127 3.873 27 O -0.287 6.287 28 C -0.151 4.151 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.180 0.820 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.241 0.759 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.260 0.740 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.862 -10.721 -1.599 15.345 hybrid contribution -0.466 1.290 0.231 1.391 sum 10.395 -9.431 -1.368 14.102 Atomic orbital electron populations 1.20844 0.82355 0.95950 0.99375 1.43943 1.01930 1.00444 1.85634 1.19164 0.97757 0.85090 1.36555 0.91448 1.24932 0.97926 0.98314 0.98101 1.70031 1.19881 1.27253 1.37793 0.86299 0.78664 0.84224 0.77600 1.21518 1.21766 1.20534 1.19915 0.96404 0.88339 0.89981 1.21305 0.94598 0.92414 0.99620 1.21809 0.96678 1.01144 0.90768 1.21308 0.99018 0.95927 0.97484 1.20988 1.00822 0.95773 0.98218 1.20828 1.00758 0.99507 0.92102 1.19605 1.03346 0.96628 0.93575 1.20171 0.85330 0.95418 0.94503 1.46021 1.26563 1.29699 1.33694 1.18085 0.83360 0.84095 0.80182 1.90785 1.67015 1.24134 1.58958 1.20301 0.95705 0.95588 0.96312 1.22447 0.97780 0.95547 1.01167 1.22546 0.91332 0.98448 0.90902 1.67056 1.33372 1.09596 1.10913 1.19037 0.88123 0.89147 0.91006 1.84789 1.63171 1.64520 1.16244 1.22239 0.93702 1.02029 0.97169 0.95145 0.93604 0.98332 0.93577 0.92242 0.93145 0.81988 0.86813 0.87042 0.86986 0.90864 0.90236 0.75911 0.83558 0.81335 0.73960 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 8.61 59.84 0.52 4.19 16 2 N -0.60 -13.67 1.73 -182.51 -0.32 -13.99 16 3 C -0.26 -6.41 9.18 -15.06 -0.14 -6.55 16 4 H 0.07 1.66 7.84 -52.49 -0.41 1.25 16 5 C 0.01 0.15 5.04 -17.43 -0.09 0.07 16 6 N -0.90 -24.21 10.78 55.49 0.60 -23.61 16 7 Si 0.90 20.60 29.58 -169.99 -5.03 15.57 16 8 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.18 3.42 5.00 -5.19 -0.03 3.39 16 12 C -0.08 -1.33 5.88 -104.62 -0.62 -1.95 16 13 C -0.09 -1.67 9.14 -39.58 -0.36 -2.03 16 14 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 15 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 16 C -0.11 -1.54 9.67 -39.59 -0.38 -1.92 16 17 C -0.13 -1.90 5.25 -104.63 -0.55 -2.45 16 18 C 0.17 2.20 5.15 -5.20 -0.03 2.17 16 19 N -0.71 -8.66 4.98 -62.33 -0.31 -8.97 16 20 C 0.56 7.39 7.80 -12.19 -0.10 7.29 16 21 O -0.53 -8.60 16.44 5.35 0.09 -8.51 16 22 C -0.07 -0.78 5.91 -104.68 -0.62 -1.40 16 23 C -0.15 -1.45 9.61 -39.03 -0.38 -1.82 16 24 C 0.12 1.21 11.17 -17.61 -0.20 1.01 16 25 N -0.49 -5.72 10.36 -13.37 -0.14 -5.86 16 26 C 0.31 3.41 7.74 -17.16 -0.13 3.28 16 27 O -0.48 -4.56 13.56 -18.77 -0.25 -4.81 16 28 C -0.13 -1.46 9.61 -38.84 -0.37 -1.83 16 29 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16 30 H 0.05 1.14 7.21 -51.93 -0.37 0.77 16 31 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 32 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 34 H 0.05 0.92 7.30 -51.93 -0.38 0.54 16 35 H 0.16 3.79 5.76 -52.48 -0.30 3.49 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.11 1.27 8.00 -52.48 -0.42 0.85 16 39 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 40 H 0.08 1.11 7.22 -51.93 -0.37 0.74 16 41 H 0.40 4.48 6.60 -40.82 -0.27 4.22 16 42 H 0.15 1.15 6.53 -52.49 -0.34 0.81 16 43 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 44 H 0.40 1.79 9.06 45.56 0.41 2.20 16 45 H 0.15 1.66 7.74 -52.49 -0.41 1.25 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -30.99 379.51 -8.74 -39.73 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.84 Total: 8.02 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.26 Total: -3.30 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.17 Total: -52.43 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.17 Total: -13.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.99 -8.74 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733676300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.253 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds