Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35714 * 117.00609 * 2 1 4 4 C 1.39366 * 120.35819 * 359.97351 * 3 2 1 5 5 N 1.31296 * 120.88015 * 179.74895 * 4 3 2 6 6 C 1.32891 * 121.71398 * 0.56199 * 5 4 3 7 7 C 1.47767 * 119.68430 * 179.70987 * 6 5 4 8 8 O 1.21559 * 119.99903 * 185.64188 * 7 6 5 9 9 N 1.34777 * 119.99845 * 5.64098 * 7 6 5 10 10 C 1.46502 * 120.00075 * 357.73022 * 9 7 6 11 11 C 1.46496 * 120.00105 * 177.72493 * 9 7 6 12 12 C 1.52997 * 109.47163 * 89.99944 * 11 9 7 13 13 H 1.09000 * 109.46985 * 60.00363 * 12 11 9 14 14 O 1.42899 * 109.47326 * 300.00471 * 12 11 9 15 15 C 1.53002 * 109.47417 * 180.02562 * 12 11 9 16 16 N 1.46495 * 109.47430 * 185.00334 * 15 12 11 17 17 C 1.46500 * 120.00132 * 89.99643 * 16 15 12 18 18 C 1.36942 * 119.99643 * 270.00394 * 16 15 12 19 19 H 1.08000 * 120.00307 * 33.53467 * 18 16 15 20 20 C 1.38817 * 119.99491 * 213.53860 * 18 16 15 21 21 N 1.31620 * 120.00084 * 5.68664 * 20 18 16 22 22 Si 1.86798 * 119.99676 * 185.68722 * 20 18 16 23 23 H 1.48497 * 109.47251 * 90.00119 * 22 20 18 24 24 H 1.48505 * 109.47014 * 209.99883 * 22 20 18 25 25 H 1.48495 * 109.47344 * 329.99688 * 22 20 18 26 26 C 1.39714 * 120.62845 * 359.43856 * 6 5 4 27 27 F 1.35105 * 120.46670 * 180.29332 * 26 6 5 28 28 C 1.38685 * 119.06817 * 0.27151 * 26 6 5 29 29 H 1.08998 * 109.47956 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47527 * 300.00938 * 1 2 3 31 31 H 1.09004 * 109.46767 * 60.00090 * 1 2 3 32 32 H 1.07997 * 119.55992 * 0.04329 * 4 3 2 33 33 H 1.09007 * 109.47029 * 276.01580 * 10 9 7 34 34 H 1.08995 * 109.47388 * 36.01805 * 10 9 7 35 35 H 1.08999 * 109.47646 * 156.01956 * 10 9 7 36 36 H 1.09000 * 109.46873 * 330.00240 * 11 9 7 37 37 H 1.09004 * 109.47058 * 210.00301 * 11 9 7 38 38 H 0.96705 * 113.99667 * 299.99537 * 14 12 11 39 39 H 1.09007 * 109.46879 * 305.00211 * 15 12 11 40 40 H 1.08996 * 109.46941 * 64.99718 * 15 12 11 41 41 H 1.09006 * 109.46458 * 85.10623 * 17 16 15 42 42 H 1.08998 * 109.47148 * 205.10165 * 17 16 15 43 43 H 1.08997 * 109.47305 * 325.10705 * 17 16 15 44 44 H 0.97002 * 119.99566 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.78253 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2936 2.3828 -0.0006 5 7 1.8791 3.5579 0.0044 6 6 3.2025 3.6791 -0.0010 7 6 3.8141 5.0243 -0.0016 8 8 5.0189 5.1440 -0.1100 9 7 3.0362 6.1183 0.1180 10 6 1.5803 5.9766 0.1986 11 6 3.6464 7.4492 0.1676 12 6 3.7703 8.0066 -1.2518 13 1 2.7802 8.0775 -1.7020 14 8 4.5888 7.1362 -2.0357 15 6 4.4083 9.3963 -1.2001 16 7 4.4180 9.9795 -2.5440 17 6 3.2835 10.7861 -3.0007 18 6 5.4876 9.7706 -3.3732 19 1 6.0276 8.8361 -3.3332 20 6 5.8777 10.7600 -4.2654 21 7 5.2929 11.9388 -4.2378 22 14 7.2327 10.4183 -5.5049 23 1 6.6372 9.8757 -6.7523 24 1 7.9548 11.6798 -5.8092 25 1 8.1834 9.4280 -4.9387 26 6 4.0209 2.5468 -0.0005 27 9 5.3660 2.6738 0.0000 28 6 3.4333 1.2906 0.0001 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2152 2.3248 -0.0003 33 1 1.1663 5.9012 -0.8070 34 1 1.3334 5.0766 0.7616 35 1 1.1577 6.8468 0.7010 36 1 4.6366 7.3783 0.6178 37 1 3.0221 8.1131 0.7656 38 1 5.4864 7.0259 -1.6931 39 1 3.8326 10.0357 -0.5308 40 1 5.4311 9.3132 -0.8327 41 1 3.4127 11.8160 -2.6680 42 1 3.2336 10.7594 -4.0892 43 1 2.3602 10.3830 -2.5847 44 1 5.5658 12.6303 -4.8610 45 1 4.0395 0.3968 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734538595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = -74.901027 kcal Electronic energy + Delta-G solvation = -30290.507334 eV Core-core repulsion = 25839.577813 eV Total energy + Delta-G solvation = -4450.929521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.20517 -41.29502 -39.82423 -38.37287 -37.04404 -35.29095 -34.37790 -32.83025 -31.35116 -31.01793 -29.42779 -28.16608 -26.84640 -26.04398 -25.57195 -24.46633 -23.44654 -22.01096 -20.36626 -20.11439 -18.99398 -18.36877 -17.41980 -16.75143 -16.73594 -16.58302 -16.06770 -16.04956 -15.63852 -15.36737 -15.12443 -14.84606 -14.53558 -14.35293 -14.02067 -13.76436 -13.56543 -13.29645 -13.15397 -13.01054 -12.84155 -12.72763 -12.66944 -12.18754 -12.00085 -11.78695 -11.43283 -10.97638 -10.78072 -10.53395 -10.49027 -10.30145 -10.24747 -9.98899 -9.85694 -9.81248 -9.56799 -9.49688 -9.03358 -8.46708 -8.22913 -6.42805 -5.63084 -3.15717 0.18756 0.50204 2.36081 2.54028 2.94516 3.42583 3.47487 3.52827 3.56281 3.68587 3.76890 3.97097 4.23018 4.43167 4.47663 4.54115 4.60530 4.76833 4.91018 5.03816 5.16087 5.28090 5.31104 5.35385 5.53809 5.56564 5.72175 5.80849 5.85979 5.99214 6.07761 6.13137 6.19766 6.47377 6.59958 6.67021 6.82861 6.92948 7.10280 7.40998 7.44045 7.73696 8.00428 8.21744 8.54306 8.63653 9.37679 9.96978 10.51878 11.43477 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.002526 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.781262 B =11082.116351 C =11618.531808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.129 3.871 4 C 0.001 3.999 5 N -0.384 5.384 6 C 0.015 3.985 7 C 0.573 3.427 8 O -0.519 6.519 9 N -0.586 5.586 10 C 0.074 3.926 11 C 0.080 3.920 12 C 0.073 3.927 13 H 0.085 0.915 14 O -0.543 6.543 15 C 0.125 3.875 16 N -0.591 5.591 17 C 0.162 3.838 18 C -0.243 4.243 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.157 3.843 27 F -0.096 7.096 28 C -0.160 4.160 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.173 0.827 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.369 0.631 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.049 0.951 43 H -0.009 1.009 44 H 0.251 0.749 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -23.271 13.945 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.080 3.920 4 C -0.161 4.161 5 N -0.096 5.096 6 C -0.124 4.124 7 C 0.359 3.641 8 O -0.394 6.394 9 N -0.318 5.318 10 C -0.069 4.069 11 C -0.043 4.043 12 C 0.009 3.991 13 H 0.103 0.897 14 O -0.347 6.347 15 C -0.004 4.004 16 N -0.313 5.313 17 C 0.017 3.983 18 C -0.373 4.373 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.134 3.866 27 F -0.074 7.074 28 C -0.187 4.187 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.190 0.810 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.216 0.784 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.009 0.991 44 H 0.061 0.939 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.918 -22.475 13.417 29.646 hybrid contribution 1.383 -0.662 -0.490 1.610 sum -12.535 -23.138 12.927 29.319 Atomic orbital electron populations 1.23267 0.76951 1.05031 1.02183 1.86065 1.22459 1.25548 1.87366 1.20003 0.92051 0.86080 0.93912 1.23234 1.01279 0.86793 1.04784 1.68105 1.09202 1.25158 1.07129 1.21387 0.89372 0.94342 1.07299 1.17372 0.86125 0.82739 0.77876 1.90825 1.13462 1.85697 1.49415 1.47512 1.07603 1.05773 1.70876 1.22398 0.78751 1.03128 1.02604 1.22502 0.99745 0.82072 0.99961 1.23134 0.95705 0.91794 0.88428 0.89719 1.86542 1.26806 1.67481 1.53862 1.21352 0.98713 0.91721 0.88616 1.43635 1.18379 1.59141 1.10119 1.20744 0.85444 0.93352 0.98720 1.19200 1.06250 0.97483 1.14377 0.91472 1.25296 0.98398 0.94934 1.00922 1.70015 1.43854 1.03255 1.38403 0.86257 0.81998 0.76850 0.81458 1.21581 1.21864 1.20336 1.18210 0.78870 0.92660 0.96857 1.91667 1.27086 1.96396 1.92210 1.20833 0.92934 0.97776 1.07164 0.87390 0.91815 0.91718 0.81037 0.92636 0.87850 0.92244 0.89718 0.89891 0.78417 0.94110 0.92987 0.96220 0.93259 0.99078 0.93903 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.95 10.50 -18.85 -0.20 -2.15 16 3 C 0.13 1.01 6.72 -38.86 -0.26 0.75 16 4 C 0.00 0.01 10.21 -17.36 -0.18 -0.17 16 5 N -0.38 -4.08 5.97 -9.63 -0.06 -4.14 16 6 C 0.02 0.20 6.64 -82.96 -0.55 -0.35 16 7 C 0.57 9.17 7.19 -12.36 -0.09 9.08 16 8 O -0.52 -9.77 13.56 -5.98 -0.08 -9.85 16 9 N -0.59 -8.42 2.83 -182.73 -0.52 -8.94 16 10 C 0.07 0.82 9.39 59.85 0.56 1.38 16 11 C 0.08 1.19 5.18 -4.05 -0.02 1.16 16 12 C 0.07 1.36 3.48 -26.73 -0.09 1.26 16 13 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 14 O -0.54 -11.66 11.17 -46.53 -0.52 -12.18 16 15 C 0.12 2.61 5.37 -4.04 -0.02 2.59 16 16 N -0.59 -15.47 2.87 -181.12 -0.52 -15.99 16 17 C 0.16 4.14 9.00 59.85 0.54 4.68 16 18 C -0.24 -7.00 9.17 -15.06 -0.14 -7.14 16 19 H 0.07 1.94 7.33 -52.49 -0.38 1.56 16 20 C 0.00 0.07 5.17 -17.43 -0.09 -0.02 16 21 N -0.91 -27.59 11.08 55.49 0.61 -26.98 16 22 Si 0.90 23.06 29.56 -169.99 -5.02 18.04 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.16 1.94 7.30 -38.87 -0.28 1.65 16 27 F -0.10 -1.38 15.56 2.25 0.04 -1.34 16 28 C -0.16 -1.47 10.10 -39.12 -0.40 -1.87 16 29 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 31 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 32 H 0.17 0.70 6.31 -52.49 -0.33 0.37 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.03 5.16 -53.53 -0.28 0.76 16 35 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 36 H 0.08 1.30 7.45 -51.93 -0.39 0.91 16 37 H 0.08 1.00 7.85 -51.93 -0.41 0.60 16 38 H 0.37 7.61 8.38 45.56 0.38 7.99 16 39 H 0.04 0.77 8.07 -51.92 -0.42 0.35 16 40 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 41 H 0.02 0.53 7.74 -51.93 -0.40 0.12 16 42 H 0.05 1.36 7.21 -51.93 -0.37 0.99 16 43 H -0.01 -0.21 8.11 -51.93 -0.42 -0.63 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -36.14 374.77 -6.12 -42.26 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.47 Total: 1.55 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -0.03 Total: 14.06 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.48 Total: -56.04 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.80 Total: -24.18 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.14 -6.12 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734538595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.643 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds