Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35714 * 117.00609 * 2 1 4 4 C 1.39366 * 120.35819 * 359.97351 * 3 2 1 5 5 N 1.31296 * 120.88015 * 179.74895 * 4 3 2 6 6 C 1.32891 * 121.71398 * 0.56199 * 5 4 3 7 7 C 1.47767 * 119.68430 * 179.70987 * 6 5 4 8 8 O 1.21559 * 119.99903 * 185.64188 * 7 6 5 9 9 N 1.34777 * 119.99845 * 5.64098 * 7 6 5 10 10 C 1.46502 * 120.00075 * 357.73022 * 9 7 6 11 11 C 1.46496 * 120.00105 * 177.72493 * 9 7 6 12 12 C 1.52997 * 109.47163 * 89.99944 * 11 9 7 13 13 H 1.09000 * 109.46985 * 60.00363 * 12 11 9 14 14 O 1.42899 * 109.47326 * 300.00471 * 12 11 9 15 15 C 1.53002 * 109.47417 * 180.02562 * 12 11 9 16 16 N 1.46495 * 109.47430 * 185.00334 * 15 12 11 17 17 C 1.46500 * 120.00132 * 89.99643 * 16 15 12 18 18 C 1.36942 * 119.99643 * 270.00394 * 16 15 12 19 19 H 1.08000 * 120.00307 * 33.53467 * 18 16 15 20 20 C 1.38817 * 119.99491 * 213.53860 * 18 16 15 21 21 N 1.31620 * 120.00084 * 5.68664 * 20 18 16 22 22 Si 1.86798 * 119.99676 * 185.68722 * 20 18 16 23 23 H 1.48497 * 109.47251 * 90.00119 * 22 20 18 24 24 H 1.48505 * 109.47014 * 209.99883 * 22 20 18 25 25 H 1.48495 * 109.47344 * 329.99688 * 22 20 18 26 26 C 1.39714 * 120.62845 * 359.43856 * 6 5 4 27 27 F 1.35105 * 120.46670 * 180.29332 * 26 6 5 28 28 C 1.38685 * 119.06817 * 0.27151 * 26 6 5 29 29 H 1.08998 * 109.47956 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47527 * 300.00938 * 1 2 3 31 31 H 1.09004 * 109.46767 * 60.00090 * 1 2 3 32 32 H 1.07997 * 119.55992 * 0.04329 * 4 3 2 33 33 H 1.09007 * 109.47029 * 276.01580 * 10 9 7 34 34 H 1.08995 * 109.47388 * 36.01805 * 10 9 7 35 35 H 1.08999 * 109.47646 * 156.01956 * 10 9 7 36 36 H 1.09000 * 109.46873 * 330.00240 * 11 9 7 37 37 H 1.09004 * 109.47058 * 210.00301 * 11 9 7 38 38 H 0.96705 * 113.99667 * 299.99537 * 14 12 11 39 39 H 1.09007 * 109.46879 * 305.00211 * 15 12 11 40 40 H 1.08996 * 109.46941 * 64.99718 * 15 12 11 41 41 H 1.09006 * 109.46458 * 85.10623 * 17 16 15 42 42 H 1.08998 * 109.47148 * 205.10165 * 17 16 15 43 43 H 1.08997 * 109.47305 * 325.10705 * 17 16 15 44 44 H 0.97002 * 119.99566 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.78253 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2936 2.3828 -0.0006 5 7 1.8791 3.5579 0.0044 6 6 3.2025 3.6791 -0.0010 7 6 3.8141 5.0243 -0.0016 8 8 5.0189 5.1440 -0.1100 9 7 3.0362 6.1183 0.1180 10 6 1.5803 5.9766 0.1986 11 6 3.6464 7.4492 0.1676 12 6 3.7703 8.0066 -1.2518 13 1 2.7802 8.0775 -1.7020 14 8 4.5888 7.1362 -2.0357 15 6 4.4083 9.3963 -1.2001 16 7 4.4180 9.9795 -2.5440 17 6 3.2835 10.7861 -3.0007 18 6 5.4876 9.7706 -3.3732 19 1 6.0276 8.8361 -3.3332 20 6 5.8777 10.7600 -4.2654 21 7 5.2929 11.9388 -4.2378 22 14 7.2327 10.4183 -5.5049 23 1 6.6372 9.8757 -6.7523 24 1 7.9548 11.6798 -5.8092 25 1 8.1834 9.4280 -4.9387 26 6 4.0209 2.5468 -0.0005 27 9 5.3660 2.6738 0.0000 28 6 3.4333 1.2906 0.0001 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2152 2.3248 -0.0003 33 1 1.1663 5.9012 -0.8070 34 1 1.3334 5.0766 0.7616 35 1 1.1577 6.8468 0.7010 36 1 4.6366 7.3783 0.6178 37 1 3.0221 8.1131 0.7656 38 1 5.4864 7.0259 -1.6931 39 1 3.8326 10.0357 -0.5308 40 1 5.4311 9.3132 -0.8327 41 1 3.4127 11.8160 -2.6680 42 1 3.2336 10.7594 -4.0892 43 1 2.3602 10.3830 -2.5847 44 1 5.5658 12.6303 -4.8610 45 1 4.0395 0.3968 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734538595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = -101.193666 kcal Electronic energy + Delta-G solvation = -30291.647469 eV Core-core repulsion = 25839.577813 eV Total energy + Delta-G solvation = -4452.069656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.16179 -42.03927 -40.80004 -39.19075 -38.54352 -36.77031 -36.04421 -33.59231 -33.31095 -31.99635 -30.84307 -28.55624 -28.06050 -27.79181 -27.10878 -25.40600 -24.39656 -23.46910 -22.15080 -21.18163 -19.62360 -19.19973 -18.74856 -18.33034 -17.59300 -17.47011 -17.34379 -16.97406 -16.80213 -16.60556 -16.37580 -15.99029 -15.93530 -15.50239 -15.24409 -15.06591 -14.84798 -14.62406 -14.44209 -14.17725 -13.88759 -13.80481 -13.65321 -13.34137 -13.11030 -12.82108 -12.73133 -12.56424 -12.50155 -12.38226 -12.25218 -12.16393 -11.85370 -11.80608 -11.33792 -11.15819 -10.73859 -10.57169 -10.42474 -9.78476 -9.48281 -8.51837 -7.82932 -5.38398 -0.62824 -0.21241 1.43476 1.44397 1.54164 1.59868 1.80123 1.99057 2.49884 2.51128 2.89162 2.99471 3.31540 3.35887 3.42779 3.60664 3.74357 3.79299 3.97962 4.08434 4.25418 4.36456 4.40975 4.43499 4.44884 4.54651 4.63406 4.69158 4.73162 4.83200 4.85797 4.90588 4.96873 5.06140 5.25145 5.29135 5.35434 5.60496 5.63341 5.72145 5.98780 6.27502 6.42549 6.43784 6.93982 7.09901 7.20525 7.88389 8.36265 9.20584 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.002526 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.781262 B =11082.116351 C =11618.531808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.309 6.309 3 C 0.146 3.854 4 C 0.015 3.985 5 N -0.388 5.388 6 C -0.014 4.014 7 C 0.562 3.438 8 O -0.562 6.562 9 N -0.588 5.588 10 C 0.073 3.927 11 C 0.090 3.910 12 C 0.084 3.916 13 H 0.078 0.922 14 O -0.565 6.565 15 C 0.124 3.876 16 N -0.611 5.611 17 C 0.175 3.825 18 C -0.248 4.248 19 H 0.060 0.940 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.272 1.272 26 C 0.135 3.865 27 F -0.118 7.118 28 C -0.161 4.161 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.214 0.786 33 H 0.048 0.952 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.369 0.631 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.001 0.999 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.248 0.752 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -25.330 15.039 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.220 6.220 3 C 0.096 3.904 4 C -0.149 4.149 5 N -0.100 5.100 6 C -0.151 4.151 7 C 0.349 3.651 8 O -0.441 6.441 9 N -0.318 5.318 10 C -0.069 4.069 11 C -0.033 4.033 12 C 0.021 3.979 13 H 0.096 0.904 14 O -0.370 6.370 15 C -0.004 4.004 16 N -0.334 5.334 17 C 0.030 3.970 18 C -0.379 4.379 19 H 0.077 0.923 20 C -0.246 4.246 21 N -0.585 5.585 22 Si 0.793 3.207 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.197 1.197 26 C 0.112 3.888 27 F -0.096 7.096 28 C -0.187 4.187 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.231 0.769 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -16.526 -24.558 14.545 32.982 hybrid contribution 1.963 -0.227 -0.779 2.124 sum -14.563 -24.785 13.767 31.873 Atomic orbital electron populations 1.23685 0.74514 1.06924 1.03685 1.86092 1.24889 1.24510 1.86460 1.20024 0.91586 0.86947 0.91891 1.23904 1.02997 0.85691 1.02270 1.68049 1.07789 1.26632 1.07508 1.21013 0.90585 0.93087 1.10432 1.17910 0.85915 0.84178 0.77073 1.90783 1.15302 1.86574 1.51406 1.47632 1.08890 1.05075 1.70190 1.22574 0.76635 1.04987 1.02665 1.22308 1.00524 0.83095 0.97416 1.22959 0.94330 0.90124 0.90475 0.90387 1.86505 1.27134 1.68145 1.55191 1.21522 0.99153 0.93110 0.86565 1.43883 1.18032 1.59585 1.11875 1.20520 0.86914 0.92709 0.96863 1.19374 1.06596 0.97072 1.14841 0.92270 1.25992 1.00728 0.94961 1.02959 1.70153 1.45177 1.03896 1.39227 0.85310 0.79549 0.76689 0.79142 1.21561 1.21619 1.19719 1.18460 0.78067 0.93797 0.98432 1.91601 1.28713 1.96606 1.92701 1.20987 0.94039 0.97048 1.06656 0.85561 0.89964 0.90448 0.76918 0.93379 0.86557 0.89902 0.90595 0.86316 0.78426 0.91457 0.93735 0.98072 0.96378 0.95414 0.94284 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.86 10.50 -90.36 -0.95 -3.81 16 3 C 0.15 1.89 6.72 22.74 0.15 2.04 16 4 C 0.01 0.17 10.21 85.04 0.87 1.04 16 5 N -0.39 -7.47 5.97 -184.38 -1.10 -8.57 16 6 C -0.01 -0.38 6.64 41.86 0.28 -0.10 16 7 C 0.56 18.31 7.19 86.76 0.62 18.93 16 8 O -0.56 -22.23 13.56 6.90 0.09 -22.14 16 9 N -0.59 -16.37 2.83 -850.29 -2.40 -18.77 16 10 C 0.07 1.45 9.39 127.77 1.20 2.65 16 11 C 0.09 2.55 5.18 86.38 0.45 3.00 16 12 C 0.08 3.07 3.48 30.59 0.11 3.17 16 13 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 14 O -0.56 -24.81 11.17 -138.18 -1.54 -26.35 16 15 C 0.12 5.10 5.37 86.38 0.46 5.56 16 16 N -0.61 -32.13 2.87 -726.93 -2.08 -34.22 16 17 C 0.17 8.95 9.00 127.77 1.15 10.10 16 18 C -0.25 -14.50 9.17 84.03 0.77 -13.73 16 19 H 0.06 3.50 7.33 -2.91 -0.02 3.48 16 20 C -0.05 -3.05 5.17 84.86 0.44 -2.61 16 21 N -0.94 -57.85 11.08 21.65 0.24 -57.61 16 22 Si 0.96 48.22 29.56 68.60 2.03 50.25 16 23 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 26 C 0.14 3.40 7.30 22.73 0.17 3.56 16 27 F -0.12 -3.62 15.56 44.97 0.70 -2.92 16 28 C -0.16 -2.77 10.10 22.57 0.23 -2.55 16 29 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.08 -0.20 7.67 -2.39 -0.02 -0.22 16 31 H 0.08 -0.10 7.67 -2.38 -0.02 -0.12 16 32 H 0.21 0.62 6.31 -2.91 -0.02 0.61 16 33 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.12 2.03 5.16 -5.54 -0.03 2.00 16 35 H 0.08 1.25 7.83 -2.39 -0.02 1.23 16 36 H 0.08 2.32 7.45 -2.39 -0.02 2.30 16 37 H 0.12 2.51 7.85 -2.38 -0.02 2.49 16 38 H 0.37 15.92 8.38 -74.05 -0.62 15.30 16 39 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 40 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 41 H 0.00 0.05 7.74 -2.38 -0.02 0.04 16 42 H 0.02 0.99 7.21 -2.39 -0.02 0.97 16 43 H 0.03 1.19 8.11 -2.39 -0.02 1.17 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -81.53 374.77 3.38 -78.15 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.39 Total: 13.82 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 8.01 Total: 32.18 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.35 Total: -119.18 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -2.40 Total: -52.31 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.70 Total: -2.92 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -81.53 3.38 -78.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734538595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.044 kcal (2) G-P(sol) polarization free energy of solvation -81.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds