Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99455 * 2 1 4 4 C 1.38751 * 120.06209 * 0.25674 * 3 2 1 5 5 C 1.38119 * 119.94738 * 180.27579 * 4 3 2 6 6 C 1.38295 * 120.05643 * 359.72258 * 5 4 3 7 7 C 1.38249 * 120.10592 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.06039 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02806 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46724 * 220.00013 * 9 8 7 11 11 N 1.46500 * 109.47074 * 339.99475 * 9 8 7 12 12 C 1.34773 * 120.00431 * 275.00559 * 11 9 8 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 9 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.50701 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00145 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00027 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00327 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47242 * 120.00258 * 20 18 16 23 23 H 1.48494 * 109.47552 * 240.00390 * 20 18 16 24 24 C 1.50691 * 109.47275 * 100.00085 * 9 8 7 25 25 C 1.38232 * 119.62151 * 124.99867 * 24 9 8 26 26 C 1.38625 * 119.16051 * 179.97438 * 25 24 9 27 27 C 1.38672 * 118.42579 * 359.97438 * 26 25 24 28 28 C 1.38182 * 119.15867 * 0.02562 * 27 26 25 29 29 N 1.31861 * 119.62031 * 304.72362 * 24 9 8 30 30 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47541 * 299.99771 * 1 2 3 32 32 H 1.08995 * 109.47375 * 60.00019 * 1 2 3 33 33 H 1.08001 * 120.02355 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97268 * 179.74415 * 5 4 3 35 35 H 1.07992 * 119.94321 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.96526 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99456 * 95.00121 * 11 9 8 38 38 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 39 39 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 40 40 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 41 41 H 0.96994 * 120.00789 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.41614 * 359.97438 * 25 24 9 43 43 H 1.07998 * 120.78677 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.41982 * 180.02562 * 27 26 25 45 45 H 1.08001 * 119.61680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2913 2.3754 0.0054 5 6 1.9207 3.6048 -0.0004 6 6 3.3018 3.6759 -0.0057 7 6 4.0558 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0001 9 6 4.2537 0.0223 0.0004 10 1 3.7900 -0.7137 -0.6564 11 7 5.6060 0.3203 -0.4780 12 6 5.8650 0.3351 -1.8005 13 8 4.9764 0.1005 -2.5967 14 7 7.1078 0.6147 -2.2408 15 6 7.3879 0.6366 -3.6786 16 6 8.8397 0.9729 -3.9024 17 1 9.4888 1.1526 -3.0581 18 6 9.3395 1.0509 -5.1850 19 7 8.5490 0.8325 -6.2132 20 14 11.1392 1.4670 -5.4625 21 1 11.8092 1.6651 -4.1520 22 1 11.7981 0.3535 -6.1914 23 1 11.2415 2.7125 -6.2645 24 6 4.3264 -0.5294 1.4008 25 6 3.9339 -1.8325 1.6430 26 6 4.0052 -2.3304 2.9348 27 6 4.4713 -1.4955 3.9392 28 6 4.8460 -0.2040 3.6214 29 7 4.7689 0.2347 2.3801 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2127 2.3203 0.0100 34 1 1.3337 4.5114 -0.0004 35 1 3.7919 4.6382 -0.0098 36 1 5.1343 2.5754 -0.0096 37 1 6.3149 0.5071 0.1572 38 1 7.8167 0.8015 -1.6056 39 1 7.1712 -0.3424 -4.1059 40 1 6.7627 1.3892 -4.1591 41 1 8.9006 0.8871 -7.1155 42 1 3.5761 -2.4548 0.8361 43 1 3.7057 -3.3446 3.1537 44 1 4.5406 -1.8503 4.9570 45 1 5.2105 0.4524 4.3978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 1.275933 kcal Electronic energy + Delta-G solvation = -29334.011684 eV Core-core repulsion = 25317.154668 eV Total energy + Delta-G solvation = -4016.857016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.83433 -39.84899 -38.99194 -37.31906 -35.22551 -33.95902 -32.54472 -32.37738 -31.42617 -30.75310 -29.99394 -27.57262 -27.11811 -25.90567 -23.68211 -22.81437 -22.63971 -21.94125 -20.92075 -19.94742 -18.21657 -18.08125 -17.06618 -16.62174 -16.24618 -15.95142 -15.88873 -15.75691 -15.49307 -14.89931 -14.54641 -14.49500 -14.28068 -13.95600 -13.73481 -13.60403 -13.38561 -13.14030 -12.92155 -12.78418 -12.40123 -12.05286 -11.92365 -11.78599 -11.73059 -11.33066 -11.11165 -10.91514 -10.88009 -10.83856 -10.25470 -10.03080 -9.62195 -9.43634 -9.29810 -9.12520 -8.80634 -8.69895 -8.63345 -8.05719 -7.70050 -6.10482 -4.16548 0.89979 1.14389 1.46253 1.56421 3.27024 3.27472 3.29557 3.35291 3.39183 3.75395 3.81249 4.02118 4.19911 4.37268 4.60862 4.68406 4.79312 4.88408 4.91705 4.98875 5.03105 5.06563 5.19818 5.21377 5.25692 5.32352 5.38498 5.42774 5.49972 5.57215 5.66687 5.82614 5.99261 6.02575 6.09092 6.33734 6.48373 6.54219 6.66274 6.84394 6.96397 7.18757 7.41172 7.58572 7.61751 7.64028 7.86374 7.97140 8.10476 8.82720 9.01070 9.39854 9.54383 10.99828 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003070 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.924393 B = 9118.910336 C =10252.970458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.134 3.866 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.158 4.158 7 C -0.045 4.045 8 C -0.108 4.108 9 C 0.270 3.730 10 H 0.111 0.889 11 N -0.746 5.746 12 C 0.695 3.305 13 O -0.594 6.594 14 N -0.728 5.728 15 C 0.268 3.732 16 C -0.539 4.539 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.132 3.868 25 C -0.146 4.146 26 C -0.077 4.077 27 C -0.175 4.175 28 C 0.097 3.903 29 N -0.466 5.466 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.395 0.605 38 H 0.386 0.614 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -1.760 22.004 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.088 3.912 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.176 4.176 7 C -0.064 4.064 8 C -0.110 4.110 9 C 0.163 3.837 10 H 0.129 0.871 11 N -0.402 5.402 12 C 0.395 3.605 13 O -0.472 6.472 14 N -0.380 5.380 15 C 0.147 3.853 16 C -0.578 4.578 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.006 4.006 25 C -0.166 4.166 26 C -0.103 4.103 27 C -0.195 4.195 28 C -0.060 4.060 29 N -0.175 5.175 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.229 0.771 38 H 0.218 0.782 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.911 -1.335 20.779 25.611 hybrid contribution 1.011 -0.284 0.572 1.196 sum -13.901 -1.619 21.352 25.529 Atomic orbital electron populations 1.23007 0.78812 1.03675 1.01109 1.86061 1.20994 1.26907 1.88715 1.18731 0.91441 0.84249 0.96741 1.21083 0.99566 0.92381 1.10141 1.20868 0.94703 0.96715 0.97993 1.21035 0.93844 0.98413 1.04320 1.20776 1.00254 0.90612 0.94735 1.19355 0.90098 0.95878 1.05685 1.18051 0.82730 0.94021 0.88885 0.87091 1.45143 1.10528 1.78234 1.06338 1.16113 0.84190 0.78702 0.81526 1.90886 1.45386 1.56994 1.53975 1.45704 1.07827 1.73366 1.11137 1.18976 0.95673 0.97553 0.73146 1.21270 0.94344 1.49475 0.92702 0.91913 1.24938 0.98338 0.95022 0.95748 1.69989 1.35393 1.48288 0.98650 0.86374 0.84258 0.78038 0.78292 1.19670 1.20868 1.20846 1.21119 0.94593 0.90447 0.94475 1.21992 1.00445 0.96194 0.98015 1.21565 0.96184 0.99995 0.92574 1.22145 1.01165 0.95696 1.00466 1.22744 0.95964 0.93926 0.93408 1.67452 1.12862 1.37025 1.00203 0.88432 0.93054 0.92653 0.85804 0.86172 0.86028 0.85344 0.77091 0.78189 0.95765 0.95715 0.92576 0.84462 0.84810 0.84963 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.17 9.73 -19.43 -0.19 -4.36 16 3 C 0.13 1.97 6.65 -39.21 -0.26 1.71 16 4 C -0.21 -2.73 9.04 -39.44 -0.36 -3.08 16 5 C -0.08 -1.06 10.04 -39.60 -0.40 -1.45 16 6 C -0.16 -2.15 10.04 -39.56 -0.40 -2.55 16 7 C -0.05 -0.70 9.32 -39.60 -0.37 -1.07 16 8 C -0.11 -1.71 4.84 -104.47 -0.51 -2.21 16 9 C 0.27 4.23 2.16 -70.24 -0.15 4.08 16 10 H 0.11 1.94 7.01 -51.93 -0.36 1.57 16 11 N -0.75 -12.35 3.68 -60.96 -0.22 -12.57 16 12 C 0.69 14.87 8.52 -86.92 -0.74 14.13 16 13 O -0.59 -15.24 16.01 5.28 0.08 -15.16 16 14 N -0.73 -16.04 5.55 -66.41 -0.37 -16.41 16 15 C 0.27 7.30 5.43 -5.19 -0.03 7.28 16 16 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 17 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.13 1.74 5.61 -82.59 -0.46 1.28 16 25 C -0.15 -1.65 9.71 -39.44 -0.38 -2.03 16 26 C -0.08 -0.68 10.18 -39.28 -0.40 -1.08 16 27 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 28 C 0.10 0.95 11.18 -17.55 -0.20 0.76 16 29 N -0.47 -5.88 9.99 -9.48 -0.09 -5.98 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 32 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 33 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.13 1.97 7.14 -52.48 -0.37 1.59 16 37 H 0.40 5.71 8.58 -40.82 -0.35 5.36 16 38 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 42 H 0.14 1.42 7.95 -52.48 -0.42 1.00 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -35.41 387.74 -9.60 -45.01 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.89 Total: 11.64 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -4.47 Total: 1.61 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.05 Total: -60.72 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.10 Total: -19.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.41 -9.60 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.281 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds