Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99455 * 2 1 4 4 C 1.38751 * 120.06209 * 0.25674 * 3 2 1 5 5 C 1.38119 * 119.94738 * 180.27579 * 4 3 2 6 6 C 1.38295 * 120.05643 * 359.72258 * 5 4 3 7 7 C 1.38249 * 120.10592 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.06039 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02806 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46724 * 220.00013 * 9 8 7 11 11 N 1.46500 * 109.47074 * 339.99475 * 9 8 7 12 12 C 1.34773 * 120.00431 * 275.00559 * 11 9 8 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 9 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.50701 * 109.46923 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00145 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00027 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00327 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47242 * 120.00258 * 20 18 16 23 23 H 1.48494 * 109.47552 * 240.00390 * 20 18 16 24 24 C 1.50691 * 109.47275 * 100.00085 * 9 8 7 25 25 C 1.38232 * 119.62151 * 124.99867 * 24 9 8 26 26 C 1.38625 * 119.16051 * 179.97438 * 25 24 9 27 27 C 1.38672 * 118.42579 * 359.97438 * 26 25 24 28 28 C 1.38182 * 119.15867 * 0.02562 * 27 26 25 29 29 N 1.31861 * 119.62031 * 304.72362 * 24 9 8 30 30 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47541 * 299.99771 * 1 2 3 32 32 H 1.08995 * 109.47375 * 60.00019 * 1 2 3 33 33 H 1.08001 * 120.02355 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97268 * 179.74415 * 5 4 3 35 35 H 1.07992 * 119.94321 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.96526 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99456 * 95.00121 * 11 9 8 38 38 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 39 39 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 40 40 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 41 41 H 0.96994 * 120.00789 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.41614 * 359.97438 * 25 24 9 43 43 H 1.07998 * 120.78677 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.41982 * 180.02562 * 27 26 25 45 45 H 1.08001 * 119.61680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2913 2.3754 0.0054 5 6 1.9207 3.6048 -0.0004 6 6 3.3018 3.6759 -0.0057 7 6 4.0558 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0001 9 6 4.2537 0.0223 0.0004 10 1 3.7900 -0.7137 -0.6564 11 7 5.6060 0.3203 -0.4780 12 6 5.8650 0.3351 -1.8005 13 8 4.9764 0.1005 -2.5967 14 7 7.1078 0.6147 -2.2408 15 6 7.3879 0.6366 -3.6786 16 6 8.8397 0.9729 -3.9024 17 1 9.4888 1.1526 -3.0581 18 6 9.3395 1.0509 -5.1850 19 7 8.5490 0.8325 -6.2132 20 14 11.1392 1.4670 -5.4625 21 1 11.8092 1.6651 -4.1520 22 1 11.7981 0.3535 -6.1914 23 1 11.2415 2.7125 -6.2645 24 6 4.3264 -0.5294 1.4008 25 6 3.9339 -1.8325 1.6430 26 6 4.0052 -2.3304 2.9348 27 6 4.4713 -1.4955 3.9392 28 6 4.8460 -0.2040 3.6214 29 7 4.7689 0.2347 2.3801 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2127 2.3203 0.0100 34 1 1.3337 4.5114 -0.0004 35 1 3.7919 4.6382 -0.0098 36 1 5.1343 2.5754 -0.0096 37 1 6.3149 0.5071 0.1572 38 1 7.8167 0.8015 -1.6056 39 1 7.1712 -0.3424 -4.1059 40 1 6.7627 1.3892 -4.1591 41 1 8.9006 0.8871 -7.1155 42 1 3.5761 -2.4548 0.8361 43 1 3.7057 -3.3446 3.1537 44 1 4.5406 -1.8503 4.9570 45 1 5.2105 0.4524 4.3978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = -23.259956 kcal Electronic energy + Delta-G solvation = -29335.075640 eV Core-core repulsion = 25317.154668 eV Total energy + Delta-G solvation = -4017.920972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89490 -40.73895 -40.59514 -38.36003 -36.62319 -35.91600 -34.40218 -33.33318 -32.72804 -31.71843 -30.99747 -29.29754 -28.13077 -27.18585 -24.70849 -24.40760 -23.71388 -23.01537 -22.22945 -21.51983 -19.93843 -19.07221 -18.35355 -17.82333 -17.50042 -17.34699 -16.84930 -16.68824 -16.66993 -16.34657 -16.21140 -15.93011 -15.33979 -15.18267 -15.01056 -14.77862 -14.40846 -14.35807 -14.08647 -13.99782 -13.98456 -13.70083 -13.29993 -12.89395 -12.85065 -12.74554 -12.56556 -12.40440 -12.20945 -11.99784 -11.86339 -11.43592 -11.30299 -10.80510 -10.79374 -10.53085 -10.25640 -10.03385 -9.77723 -9.63122 -9.08887 -8.27131 -6.43428 0.06508 0.39150 0.42002 0.50202 1.43807 1.45551 1.58723 1.83912 2.22529 2.39032 2.40148 2.77225 2.90562 3.07723 3.25982 3.47727 3.71248 3.88220 3.94630 4.06970 4.13711 4.20076 4.25325 4.29396 4.38430 4.41665 4.46300 4.55016 4.63870 4.70682 4.79388 4.84887 5.02897 5.08538 5.22699 5.23842 5.28208 5.28662 5.39896 5.49839 5.53552 5.64211 5.69087 5.79097 5.85955 5.87290 6.21481 6.45381 6.68121 7.04833 7.24314 7.28667 7.70610 8.85520 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003070 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.924393 B = 9118.910336 C =10252.970458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.118 3.882 4 C -0.214 4.214 5 C -0.084 4.084 6 C -0.168 4.168 7 C -0.068 4.068 8 C -0.131 4.131 9 C 0.274 3.726 10 H 0.083 0.917 11 N -0.722 5.722 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.721 5.721 15 C 0.288 3.712 16 C -0.553 4.553 17 H 0.083 0.917 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.112 3.888 25 C -0.160 4.160 26 C -0.074 4.074 27 C -0.160 4.160 28 C 0.086 3.914 29 N -0.489 5.489 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.407 0.593 38 H 0.403 0.597 39 H -0.014 1.014 40 H -0.015 1.015 41 H 0.269 0.731 42 H 0.135 0.865 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -1.471 24.975 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.073 3.927 4 C -0.233 4.233 5 C -0.102 4.102 6 C -0.187 4.187 7 C -0.087 4.087 8 C -0.134 4.134 9 C 0.167 3.833 10 H 0.101 0.899 11 N -0.378 5.378 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.375 5.375 15 C 0.165 3.835 16 C -0.591 4.591 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.025 4.025 25 C -0.180 4.180 26 C -0.100 4.100 27 C -0.180 4.180 28 C -0.072 4.072 29 N -0.198 5.198 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.243 0.757 38 H 0.238 0.762 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.078 0.922 42 H 0.153 0.847 43 H 0.183 0.817 44 H 0.188 0.812 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.590 -1.046 23.836 27.967 hybrid contribution 0.759 -0.424 -0.236 0.901 sum -13.831 -1.469 23.600 27.394 Atomic orbital electron populations 1.23316 0.76631 1.05454 1.02056 1.86043 1.23314 1.26603 1.88606 1.18941 0.91408 0.85428 0.96961 1.21461 1.00998 0.91827 1.08985 1.21279 0.94451 0.97927 0.96520 1.21321 0.94713 0.98500 1.04122 1.20843 1.00088 0.91453 0.96299 1.19462 0.91109 0.95780 1.07013 1.17992 0.81310 0.93761 0.90228 0.89944 1.44884 1.11814 1.76611 1.04462 1.16188 0.83266 0.78084 0.82712 1.90848 1.46678 1.58900 1.55744 1.45299 1.08828 1.73806 1.09565 1.18409 0.95576 0.94095 0.75468 1.21614 0.94287 1.49484 0.93709 0.89936 1.26057 1.03836 0.94393 0.95260 1.70151 1.38129 1.49247 0.99387 0.85092 0.77413 0.77699 0.78866 1.17737 1.20386 1.20389 1.20726 0.97154 0.91353 0.93315 1.22098 1.00904 0.95540 0.99500 1.21944 0.95186 1.01463 0.91393 1.22560 0.98761 0.94671 1.01993 1.23287 0.95740 0.95316 0.92819 1.67362 1.13651 1.37613 1.01214 0.86408 0.91378 0.92270 0.82996 0.82888 0.84314 0.86347 0.75658 0.76182 0.99608 0.99687 0.92246 0.84714 0.81734 0.81244 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.03 9.73 -92.44 -0.90 -9.93 16 3 C 0.12 3.56 6.65 22.51 0.15 3.71 16 4 C -0.21 -5.28 9.04 22.36 0.20 -5.08 16 5 C -0.08 -1.98 10.04 22.26 0.22 -1.76 16 6 C -0.17 -4.58 10.04 22.29 0.22 -4.36 16 7 C -0.07 -2.20 9.32 22.25 0.21 -2.00 16 8 C -0.13 -4.37 4.84 -19.77 -0.10 -4.46 16 9 C 0.27 9.13 2.16 43.50 0.09 9.22 16 10 H 0.08 3.17 7.01 -2.39 -0.02 3.15 16 11 N -0.72 -25.30 3.68 -465.05 -1.71 -27.01 16 12 C 0.70 31.72 8.52 179.06 1.52 33.24 16 13 O -0.64 -35.27 16.01 -4.01 -0.06 -35.33 16 14 N -0.72 -33.27 5.55 -482.29 -2.68 -35.95 16 15 C 0.29 16.59 5.43 85.63 0.46 17.05 16 16 C -0.55 -31.06 9.28 25.60 0.24 -30.82 16 17 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -57.31 13.29 21.44 0.28 -57.03 16 20 Si 0.99 43.27 29.54 68.60 2.03 45.30 16 21 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 C 0.11 3.03 5.61 42.55 0.24 3.27 16 25 C -0.16 -3.59 9.71 22.36 0.22 -3.37 16 26 C -0.07 -1.14 10.18 22.47 0.23 -0.91 16 27 C -0.16 -2.13 10.11 22.36 0.23 -1.91 16 28 C 0.09 1.51 11.18 84.67 0.95 2.46 16 29 N -0.49 -12.17 9.99 -183.89 -1.84 -14.01 16 30 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 0.90 7.65 -2.38 -0.02 0.88 16 32 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 33 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.12 3.86 7.14 -2.91 -0.02 3.84 16 37 H 0.41 12.25 8.58 -92.71 -0.80 11.45 16 38 H 0.40 15.63 8.34 -92.71 -0.77 14.85 16 39 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.13 2.94 7.95 -2.91 -0.02 2.92 16 43 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -81.80 387.74 1.25 -80.55 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.53 Total: 37.00 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.66 Total: 16.41 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -5.94 Total: -133.99 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.96 Total: -45.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -81.80 1.25 -80.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.289 kcal (2) G-P(sol) polarization free energy of solvation -81.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds