Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35776 * 117.00184 * 2 1 4 4 C 1.38636 * 120.12744 * 0.02562 * 3 2 1 5 5 C 1.38131 * 120.06843 * 179.97438 * 4 3 2 6 6 C 1.38446 * 120.32193 * 359.97438 * 5 4 3 7 7 C 1.37933 * 120.25705 * 359.71985 * 6 5 4 8 8 C 1.39413 * 119.92647 * 0.55761 * 7 6 5 9 9 C 1.48156 * 120.15459 * 179.71884 * 8 7 6 10 10 N 1.32651 * 119.23267 * 359.72269 * 9 8 7 11 11 C 1.32191 * 120.73118 * 179.97438 * 10 9 8 12 12 C 1.38682 * 119.20805 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.71204 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.47392 * 89.99597 * 13 12 11 15 15 C 1.47960 * 110.99975 * 190.00152 * 14 13 12 16 16 C 1.53940 * 86.18020 * 222.41827 * 15 14 13 17 17 O 1.42900 * 113.73337 * 269.26005 * 16 15 14 18 18 C 1.50694 * 113.73364 * 138.08016 * 16 15 14 19 19 H 1.08000 * 120.00563 * 1.89939 * 18 16 15 20 20 C 1.37885 * 119.99902 * 181.90102 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.48189 * 111.06803 * 90.56563 * 14 13 12 27 27 C 1.38690 * 118.57786 * 0.24431 * 12 11 10 28 28 N 1.32189 * 119.20581 * 359.47694 * 27 12 11 29 29 H 1.08998 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47289 * 300.00065 * 1 2 3 31 31 H 1.09002 * 109.46677 * 60.00035 * 1 2 3 32 32 H 1.08008 * 119.96975 * 359.95904 * 4 3 2 33 33 H 1.08000 * 119.83854 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.86502 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.03496 * 180.27461 * 7 6 5 36 36 H 1.07998 * 120.39373 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46888 * 329.99759 * 13 12 11 38 38 H 1.09005 * 109.47315 * 210.00082 * 13 12 11 39 39 H 1.09000 * 113.75922 * 108.10132 * 15 14 13 40 40 H 1.08996 * 113.85941 * 336.74802 * 15 14 13 41 41 H 0.96699 * 113.99865 * 178.10203 * 17 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.76245 * 23.24297 * 26 14 13 44 44 H 1.08999 * 113.82580 * 251.80952 * 26 14 13 45 45 H 1.08003 * 120.39897 * 179.72539 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2930 2.3741 0.0005 5 6 1.9214 3.6042 0.0011 6 6 3.3036 3.6830 0.0016 7 6 4.0653 2.5330 0.0074 8 6 3.4421 1.2860 0.0011 9 6 4.2553 0.0476 0.0010 10 7 5.5785 0.1415 0.0015 11 6 6.3327 -0.9442 0.0019 12 6 5.7247 -2.1906 0.0014 13 6 6.5518 -3.4504 0.0013 14 7 6.8202 -3.8601 1.3863 15 6 7.8216 -4.9483 1.4327 16 6 6.9198 -5.5933 2.5005 17 8 7.2452 -5.2076 3.8375 18 6 6.7614 -7.0834 2.3411 19 1 7.2844 -7.6006 1.5503 20 6 5.9487 -7.7866 3.2049 21 7 5.3121 -7.1570 4.1682 22 14 5.7519 -9.6336 3.0069 23 1 4.8324 -10.1485 4.0533 24 1 5.1906 -9.9305 1.6645 25 1 7.0765 -10.2903 3.1459 26 6 5.7687 -4.7783 1.8834 27 6 4.3393 -2.2530 -0.0048 28 7 3.6430 -1.1293 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2143 2.3195 0.0003 33 1 1.3316 4.5090 0.0011 34 1 3.7873 4.6487 0.0024 35 1 5.1433 2.5987 0.0123 36 1 7.4095 -0.8614 0.0027 37 1 7.4954 -3.2655 -0.5122 38 1 6.0074 -4.2424 -0.5130 39 1 8.7944 -4.6341 1.8110 40 1 7.8902 -5.5241 0.5097 41 1 6.6628 -5.5878 4.5093 42 1 4.7401 -7.6517 4.7757 43 1 5.2340 -5.3034 1.0920 44 1 5.1043 -4.3286 2.6212 45 1 3.8352 -3.2081 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430085270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 37.772636 kcal Electronic energy + Delta-G solvation = -28700.446127 eV Core-core repulsion = 24685.171727 eV Total energy + Delta-G solvation = -4015.274400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01894 -39.96322 -38.91865 -37.43977 -34.74149 -33.49793 -33.21373 -32.10796 -31.02982 -30.26625 -28.08068 -27.34690 -25.93451 -25.21663 -24.38945 -23.96105 -22.13463 -21.97739 -21.07081 -18.68195 -18.43546 -17.44265 -17.27651 -17.12887 -15.85555 -15.84249 -15.39119 -15.22448 -15.11764 -14.73191 -14.53823 -14.44252 -14.11470 -13.91213 -13.70336 -13.45559 -13.26311 -12.82442 -12.63706 -12.20138 -12.06874 -12.05997 -11.75891 -11.56874 -11.29315 -11.22643 -11.13142 -10.95754 -10.76243 -10.57526 -10.49860 -10.31892 -10.08841 -9.89262 -9.33796 -8.94655 -8.78682 -8.65740 -8.30988 -8.06532 -7.87585 -6.28649 -4.39114 0.48114 1.27497 1.34624 1.63488 3.18805 3.19769 3.24882 3.26834 3.49446 3.83710 4.14154 4.23488 4.25440 4.62629 4.76260 4.77371 4.85991 4.92022 4.92610 5.01253 5.01885 5.06389 5.17217 5.22318 5.36082 5.38046 5.49859 5.68299 5.73948 5.80796 5.90640 5.98608 6.05881 6.12521 6.24371 6.25606 6.30647 6.36187 6.58426 6.60308 6.63071 6.99549 7.08056 7.18516 7.30658 7.32469 7.72612 7.87637 7.96843 8.27022 8.62626 9.31159 9.58864 10.77151 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002434 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.675602 B =11501.140315 C =12437.733925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.271 6.271 3 C 0.171 3.829 4 C -0.225 4.225 5 C -0.063 4.063 6 C -0.172 4.172 7 C -0.034 4.034 8 C -0.077 4.077 9 C 0.345 3.655 10 N -0.516 5.516 11 C 0.161 3.839 12 C -0.166 4.166 13 C 0.062 3.938 14 N -0.475 5.475 15 C 0.010 3.990 16 C 0.246 3.754 17 O -0.572 6.572 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.013 4.013 27 C 0.155 3.845 28 N -0.485 5.485 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.388 0.612 42 H 0.271 0.729 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 17.261 -10.304 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.182 6.182 3 C 0.122 3.878 4 C -0.243 4.243 5 C -0.082 4.082 6 C -0.190 4.190 7 C -0.054 4.054 8 C -0.079 4.079 9 C 0.080 3.920 10 N -0.230 5.230 11 C -0.006 4.006 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.198 5.198 15 C -0.119 4.119 16 C 0.204 3.796 17 O -0.383 6.383 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.210 1.210 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.142 4.142 27 C -0.012 4.012 28 N -0.198 5.198 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.242 0.758 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.660 18.767 -10.115 22.654 hybrid contribution -0.624 -2.698 -0.284 2.784 sum -8.284 16.069 -10.399 20.856 Atomic orbital electron populations 1.23128 0.79421 1.04132 1.00805 1.86498 1.20044 1.24986 1.86626 1.19090 0.91106 0.85056 0.92542 1.21180 1.00133 0.92088 1.10936 1.21061 0.94761 0.96937 0.95439 1.20993 0.93741 0.98391 1.05894 1.21175 1.00938 0.89888 0.93391 1.17449 0.88743 0.90825 1.10920 1.20957 0.86889 0.90972 0.93138 1.68260 1.06289 1.33591 1.14846 1.22977 1.00366 0.86790 0.90467 1.21641 0.96274 0.97730 1.01364 1.21492 0.98190 0.92919 0.94130 1.68639 1.07518 1.29020 1.14621 1.24141 0.97358 0.91370 0.98992 1.19718 0.87897 0.90948 0.81025 1.86046 1.60304 1.75037 1.16880 1.21593 1.28216 0.92674 1.15312 0.91694 1.25063 0.94264 0.99219 0.94546 1.69420 1.30054 1.36563 1.17582 0.86480 0.78216 0.84351 0.77949 1.21030 1.20075 1.19954 1.24836 0.96705 0.93323 0.99302 1.23153 0.90638 0.96994 0.90449 1.68537 1.40443 0.97993 1.12800 0.88101 0.92869 0.92969 0.85111 0.85680 0.85453 0.83964 0.81593 0.90375 0.92774 0.90490 0.91521 0.75781 0.91841 0.92044 0.91024 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.27 -3.65 8.29 -19.04 -0.16 -3.81 16 3 C 0.17 2.24 6.69 -38.82 -0.26 1.98 16 4 C -0.22 -2.25 9.03 -39.47 -0.36 -2.61 16 5 C -0.06 -0.56 10.03 -39.54 -0.40 -0.95 16 6 C -0.17 -1.62 10.03 -39.62 -0.40 -2.02 16 7 C -0.03 -0.41 9.56 -39.26 -0.38 -0.78 16 8 C -0.08 -1.10 5.89 -104.78 -0.62 -1.72 16 9 C 0.34 5.68 7.55 -156.91 -1.19 4.49 16 10 N -0.52 -8.19 9.46 -11.17 -0.11 -8.30 16 11 C 0.16 2.41 11.00 -17.23 -0.19 2.22 16 12 C -0.17 -2.59 5.48 -104.29 -0.57 -3.16 16 13 C 0.06 0.98 4.97 -4.97 -0.02 0.96 16 14 N -0.48 -9.44 6.14 -239.46 -1.47 -10.91 16 15 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 16 C 0.25 6.05 1.40 -90.83 -0.13 5.92 16 17 O -0.57 -15.31 13.48 -35.23 -0.48 -15.78 16 18 C -0.54 -14.02 8.61 -34.44 -0.30 -14.32 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.07 1.85 5.40 -17.82 -0.10 1.76 16 21 N -0.90 -23.76 11.20 55.43 0.62 -23.14 16 22 Si 0.90 20.08 29.54 -169.99 -5.02 15.05 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.01 -0.28 7.36 -2.63 -0.02 -0.30 16 27 C 0.15 2.50 11.00 -17.23 -0.19 2.31 16 28 N -0.49 -8.25 8.16 -11.16 -0.09 -8.34 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 32 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 1.61 7.51 -52.49 -0.39 1.22 16 36 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16 38 H 0.05 0.83 7.35 -51.93 -0.38 0.45 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 41 H 0.39 10.59 6.60 45.56 0.30 10.89 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 1.33 7.44 -51.93 -0.39 0.94 16 44 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.16 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -30.57 377.95 -10.45 -41.03 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.32 Total: 13.37 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.13 Total: -4.87 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -1.05 Total: -50.69 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.63 Total: -19.59 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.57 -10.45 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430085270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.800 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds