Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35919 * 116.99714 * 2 1 4 4 C 1.39140 * 120.47425 * 179.97438 * 3 2 1 5 5 C 1.38529 * 118.37759 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.22053 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.56060 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47235 * 124.99890 * 7 6 5 9 9 O 1.21281 * 119.99664 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99880 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.47290 * 269.99539 * 11 10 8 13 13 H 1.08007 * 119.99686 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00227 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00285 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99857 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47301 * 60.00166 * 16 14 12 18 18 H 1.48500 * 109.47038 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47012 * 300.00098 * 16 14 12 20 20 C 1.46493 * 119.99958 * 179.97438 * 10 8 7 21 21 C 1.50706 * 109.47190 * 90.00107 * 20 10 8 22 22 C 1.38675 * 120.41529 * 89.99861 * 21 20 10 23 23 C 1.38631 * 118.41792 * 179.97438 * 22 21 20 24 24 C 1.38221 * 119.16077 * 0.25627 * 23 22 21 25 25 N 1.31860 * 120.76509 * 359.49797 * 24 23 22 26 26 C 1.31882 * 121.72556 * 0.49011 * 25 24 23 27 27 N 1.31851 * 120.88348 * 0.25699 * 6 5 4 28 28 C 1.31846 * 121.78014 * 359.47184 * 27 6 5 29 29 H 1.09006 * 109.46813 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47158 * 299.99941 * 1 2 3 31 31 H 1.08997 * 109.47395 * 60.00269 * 1 2 3 32 32 H 1.08006 * 120.80825 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.39473 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46678 * 4.99677 * 7 6 5 35 35 H 1.08998 * 109.47119 * 245.00265 * 7 6 5 36 36 H 1.08995 * 109.47754 * 29.99925 * 11 10 8 37 37 H 1.09001 * 109.47307 * 149.99644 * 11 10 8 38 38 H 0.97001 * 120.00447 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.47517 * 330.00193 * 20 10 8 40 40 H 1.08998 * 109.47567 * 210.00042 * 20 10 8 41 41 H 1.07998 * 120.79161 * 359.96013 * 22 21 20 42 42 H 1.08002 * 120.41548 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.62066 * 179.74470 * 24 23 22 44 44 H 1.07993 * 119.62126 * 179.75488 * 26 25 24 45 45 H 1.08005 * 119.65337 * 180.27016 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 3.4348 1.2955 0.0005 5 6 4.0181 2.5520 0.0011 6 6 3.2078 3.6722 0.0016 7 6 3.8342 5.0429 0.0027 8 6 3.3022 5.8393 -1.1608 9 8 2.4936 5.3429 -1.9162 10 7 3.7249 7.1031 -1.3618 11 6 4.7020 7.7025 -0.4495 12 6 3.9790 8.3917 0.6789 13 1 2.8995 8.3837 0.7132 14 6 4.6955 9.0325 1.6673 15 7 6.0098 9.0427 1.6252 16 14 3.7991 9.8862 3.0663 17 1 2.9762 8.8950 3.8050 18 1 4.7896 10.4949 3.9903 19 1 2.9191 10.9479 2.5155 20 6 3.2082 7.8771 -2.4931 21 6 1.9721 8.6264 -2.0665 22 6 2.0730 9.9055 -1.5404 23 6 0.9093 10.5569 -1.1619 24 6 -0.3037 9.9123 -1.3154 25 7 -0.3622 8.6970 -1.8238 26 6 0.7240 8.0476 -2.1949 27 7 1.8943 3.5574 0.0066 28 6 1.3001 2.3804 0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.0432 0.4031 0.0014 33 1 5.0931 2.6554 0.0011 34 1 4.9164 4.9478 -0.0865 35 1 3.5899 5.5532 0.9344 36 1 5.3474 6.9228 -0.0450 37 1 5.3068 8.4296 -0.9914 38 1 6.5139 9.4938 2.3204 39 1 2.9593 7.2020 -3.3119 40 1 3.9665 8.5864 -2.8248 41 1 3.0353 10.3828 -1.4281 42 1 0.9505 11.5536 -0.7481 43 1 -1.2146 10.4112 -1.0191 44 1 0.6370 7.0518 -2.6037 45 1 0.2214 2.3264 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447496475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = 3.028721 kcal Electronic energy + Delta-G solvation = -29443.404865 eV Core-core repulsion = 25426.623856 eV Total energy + Delta-G solvation = -4016.781009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60548 -39.82246 -38.88577 -37.90937 -35.16720 -33.02025 -32.28079 -32.22299 -31.79274 -31.03086 -28.24490 -27.55884 -27.16054 -25.42923 -23.34386 -23.11059 -22.81740 -22.22311 -21.37779 -18.49499 -18.10122 -17.05687 -16.81470 -16.53940 -16.27930 -15.96090 -15.90183 -15.43368 -15.11940 -14.92686 -14.44221 -14.41281 -14.10674 -13.84930 -13.53477 -13.19938 -12.92130 -12.79714 -12.57000 -12.48713 -12.21923 -12.06774 -11.92763 -11.88327 -11.63101 -11.43652 -11.23519 -11.03112 -10.98869 -10.75782 -10.26537 -9.83209 -9.59569 -9.27479 -9.18736 -9.04316 -8.97452 -8.62828 -8.46959 -8.19558 -7.75986 -6.22214 -4.28283 1.25493 1.44472 1.57933 1.83583 3.12034 3.21415 3.26708 3.30324 3.43962 3.78660 4.07461 4.29937 4.43716 4.54368 4.71823 4.85690 4.91140 4.95286 4.99563 5.11249 5.14893 5.24802 5.29164 5.39134 5.44808 5.47912 5.56754 5.59899 5.65980 5.80219 5.85636 6.01613 6.06282 6.18399 6.22542 6.28885 6.31651 6.61179 6.64534 6.68745 6.85296 7.10056 7.19250 7.21426 7.48619 7.73792 8.02070 8.24340 8.29778 8.44463 8.78097 9.02558 9.39978 10.84295 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003757 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.547955 B = 7450.178540 C = 8833.371377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.060 3.940 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.122 3.878 7 C -0.085 4.085 8 C 0.527 3.473 9 O -0.554 6.554 10 N -0.596 5.596 11 C 0.237 3.763 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.166 3.834 21 C -0.141 4.141 22 C -0.036 4.036 23 C -0.183 4.183 24 C 0.087 3.913 25 N -0.496 5.496 26 C 0.116 3.884 27 N -0.417 5.417 28 C 0.026 3.974 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -8.964 -4.271 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.013 3.987 4 C -0.136 4.136 5 C -0.150 4.150 6 C -0.017 4.017 7 C -0.125 4.125 8 C 0.315 3.685 9 O -0.433 6.433 10 N -0.327 5.327 11 C 0.117 3.883 12 C -0.570 4.570 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.042 3.958 21 C -0.144 4.144 22 C -0.062 4.062 23 C -0.203 4.203 24 C -0.070 4.070 25 N -0.205 5.205 26 C -0.041 4.041 27 N -0.126 5.126 28 C -0.133 4.133 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.380 -9.007 -4.654 11.979 hybrid contribution 0.716 0.490 1.306 1.568 sum -5.664 -8.517 -3.348 10.763 Atomic orbital electron populations 1.23072 0.78314 1.03920 1.01694 1.86029 1.21419 1.26408 1.89041 1.20063 0.93296 0.85582 0.99711 1.20798 0.91546 0.98567 1.02663 1.21830 1.01366 0.91625 1.00141 1.20749 0.89032 0.94884 0.97059 1.20558 1.00596 0.90649 1.00675 1.20073 0.81200 0.81789 0.85414 1.90606 1.34272 1.70963 1.47491 1.48226 1.43808 1.12089 1.28555 1.19474 0.86755 0.94158 0.87884 1.21447 0.93606 1.34355 1.07583 0.92108 1.24876 0.94707 0.96059 0.97824 1.69895 1.05207 1.43332 1.34558 0.86686 0.79482 0.80066 0.82113 1.20148 1.21196 1.20081 1.20072 0.92272 0.94137 0.89280 1.21240 0.96865 0.95381 1.00890 1.21529 0.98845 0.93739 0.92106 1.22052 0.93823 1.01629 1.02770 1.22606 0.97270 0.91299 0.95839 1.67665 1.32816 1.08761 1.11270 1.22729 0.87391 0.98898 0.95070 1.67372 1.11685 1.25859 1.07696 1.22869 1.00319 0.87081 1.03021 0.88226 0.92492 0.92418 0.84332 0.84056 0.87725 0.86083 0.94290 0.94644 0.92505 0.90025 0.90075 0.84539 0.85504 0.83711 0.82857 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.83 10.51 -19.48 -0.20 -4.04 16 3 C 0.06 0.84 6.71 -39.08 -0.26 0.58 16 4 C -0.11 -1.43 10.13 -39.14 -0.40 -1.83 16 5 C -0.13 -1.81 9.70 -39.47 -0.38 -2.19 16 6 C 0.12 2.09 5.76 -82.58 -0.48 1.62 16 7 C -0.08 -1.52 4.65 -29.04 -0.14 -1.66 16 8 C 0.53 10.58 7.60 -10.99 -0.08 10.50 16 9 O -0.55 -12.05 14.48 5.56 0.08 -11.97 16 10 N -0.60 -11.72 2.44 -176.44 -0.43 -12.15 16 11 C 0.24 5.15 5.01 -5.20 -0.03 5.13 16 12 C -0.53 -12.90 8.74 -34.44 -0.30 -13.20 16 13 H 0.06 1.58 7.59 -52.48 -0.40 1.18 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 16 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.17 2.91 5.60 -5.19 -0.03 2.89 16 21 C -0.14 -2.56 5.48 -104.48 -0.57 -3.13 16 22 C -0.04 -0.63 9.09 -39.28 -0.36 -0.98 16 23 C -0.18 -2.97 10.11 -39.44 -0.40 -3.37 16 24 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 25 N -0.50 -9.30 10.36 -13.25 -0.14 -9.44 16 26 C 0.12 2.20 10.86 -17.55 -0.19 2.00 16 27 N -0.42 -7.71 9.23 -9.35 -0.09 -7.79 16 28 C 0.03 0.40 10.22 -17.38 -0.18 0.22 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 31 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 32 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.14 1.56 7.94 -52.49 -0.42 1.15 16 34 H 0.10 1.63 7.12 -51.93 -0.37 1.26 16 35 H 0.12 2.37 8.00 -51.93 -0.42 1.95 16 36 H 0.04 0.86 6.44 -51.93 -0.33 0.53 16 37 H 0.04 0.80 7.89 -51.93 -0.41 0.39 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.08 1.38 7.37 -51.92 -0.38 1.00 16 40 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 41 H 0.14 2.37 8.06 -52.49 -0.42 1.94 16 42 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.15 2.95 7.61 -52.49 -0.40 2.55 16 45 H 0.15 1.96 6.32 -52.48 -0.33 1.63 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -31.05 385.48 -8.26 -39.31 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.91 Total: 7.03 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.09 Total: 0.63 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.08 Total: -51.94 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.12 Total: -16.01 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.05 -8.26 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447496475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.335 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds