Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99945 * 2 1 4 4 H 1.08991 * 110.43499 * 31.07735 * 3 2 1 5 5 C 1.56069 * 110.53014 * 153.71163 * 3 2 1 6 6 H 1.09002 * 114.24391 * 347.72453 * 5 3 2 7 7 C 1.55975 * 104.13553 * 111.85246 * 5 3 2 8 8 H 1.08998 * 116.79752 * 203.71283 * 7 5 3 9 9 C 1.56223 * 102.83385 * 332.39888 * 7 5 3 10 10 C 1.55798 * 110.48347 * 268.54592 * 3 2 1 11 11 H 1.09000 * 115.98418 * 45.89104 * 10 3 2 12 12 C 1.58243 * 104.69436 * 175.45261 * 10 3 2 13 13 C 1.54781 * 104.06893 * 70.25367 * 12 10 3 14 14 H 1.09002 * 113.56298 * 125.26130 * 13 12 10 15 15 C 1.54368 * 108.45520 * 252.63265 * 13 12 10 16 16 N 1.46796 * 106.10312 * 75.98547 * 15 13 12 17 17 S 1.65602 * 125.51074 * 192.82994 * 16 15 13 18 18 O 1.42107 * 104.27366 * 333.95210 * 17 16 15 19 19 O 1.42093 * 104.27641 * 206.09815 * 17 16 15 20 20 C 1.81396 * 104.44769 * 90.02236 * 17 16 15 21 21 C 1.53010 * 109.46858 * 180.94506 * 20 17 16 22 22 C 1.50697 * 115.55195 * 65.57988 * 21 20 17 23 23 H 1.07993 * 120.00293 * 268.04330 * 22 21 20 24 24 C 1.37877 * 119.99581 * 88.03876 * 22 21 20 25 25 N 1.31519 * 119.99796 * 175.49228 * 24 22 21 26 26 Si 1.86803 * 120.00403 * 355.49889 * 24 22 21 27 27 H 1.48506 * 109.47107 * 92.06252 * 26 24 22 28 28 H 1.48496 * 109.47259 * 212.06025 * 26 24 22 29 29 H 1.48499 * 109.46902 * 332.06558 * 26 24 22 30 30 C 1.53005 * 117.49441 * 279.91280 * 21 20 17 31 31 C 1.53005 * 117.49654 * 211.25466 * 21 20 17 32 32 H 1.09001 * 109.47170 * 300.00360 * 1 2 3 33 33 H 1.09006 * 109.47258 * 59.99484 * 1 2 3 34 34 H 1.08997 * 109.47762 * 180.02562 * 1 2 3 35 35 H 1.08997 * 111.98401 * 167.32406 * 9 7 5 36 36 H 1.09000 * 111.98871 * 293.73831 * 9 7 5 37 37 H 1.09001 * 110.78115 * 311.70718 * 12 10 3 38 38 H 1.09004 * 110.86054 * 188.84356 * 12 10 3 39 39 H 1.08999 * 110.12938 * 316.82476 * 15 13 12 40 40 H 1.08996 * 110.18412 * 195.17480 * 15 13 12 41 41 H 1.08998 * 109.47336 * 60.94676 * 20 17 16 42 42 H 1.08997 * 109.47264 * 300.93908 * 20 17 16 43 43 H 0.97002 * 120.00164 * 179.97438 * 25 24 22 44 44 H 1.08994 * 117.50175 * 359.97438 * 30 21 20 45 45 H 1.08998 * 117.49732 * 145.02332 * 30 21 20 46 46 H 1.08999 * 117.49542 * 214.97458 * 31 21 20 47 47 H 1.09003 * 117.49808 * 359.97438 * 31 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3659 2.0089 0.5272 5 6 3.4299 1.2725 0.6473 6 1 3.6607 0.3460 1.1733 7 6 4.3972 1.5652 -0.5408 8 1 5.4233 1.2126 -0.4374 9 6 3.6018 1.0321 -1.7752 10 6 2.2658 1.7884 -1.4590 11 1 1.4473 1.6364 -2.1626 12 6 2.7898 3.2735 -1.3042 13 6 4.2006 3.1125 -0.6884 14 1 4.9856 3.6044 -1.2628 15 6 4.1428 3.5572 0.7887 16 7 3.4860 2.4652 1.5174 17 16 2.9078 2.5536 3.0666 18 8 3.6940 3.5681 3.6767 19 8 2.9515 1.2125 3.5341 20 6 1.1904 3.1064 2.8779 21 6 0.5465 3.2507 4.2584 22 6 1.1277 4.3282 5.1372 23 1 1.9264 4.0920 5.8246 24 6 0.6396 5.6156 5.0636 25 7 1.0842 6.5357 5.8915 26 14 -0.6533 6.0529 3.7882 27 1 -2.0062 5.8855 4.3773 28 1 -0.4704 7.4634 3.3614 29 1 -0.5112 5.1574 2.6122 30 6 0.0453 1.9763 4.9408 31 6 -0.9559 2.9830 4.3686 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 4.0428 1.3590 -2.7169 36 1 3.4755 -0.0501 -1.7429 37 1 2.1466 3.8426 -0.6329 38 1 2.8544 3.7655 -2.2748 39 1 3.5604 4.4739 0.8819 40 1 5.1503 3.7128 1.1744 41 1 0.6350 2.3734 2.2928 42 1 1.1726 4.0687 2.3663 43 1 0.7412 7.4415 5.8395 44 1 0.1739 1.0352 4.4062 45 1 0.1355 1.9175 6.0255 46 1 -1.5238 3.5860 5.0771 47 1 -1.4856 2.7045 3.4576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567323747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -89.160515 kcal Electronic energy + Delta-G solvation = -30678.722972 eV Core-core repulsion = 26761.095538 eV Total energy + Delta-G solvation = -3917.627434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26799 -38.95419 -38.27894 -38.05786 -36.93838 -35.25582 -34.33273 -31.94529 -30.34753 -29.58142 -28.09961 -27.65185 -26.99433 -25.52909 -23.45000 -22.26444 -21.21784 -21.05218 -20.18325 -19.83155 -18.89341 -18.45655 -17.81331 -17.44695 -17.04186 -16.93970 -16.43848 -16.26803 -15.65555 -15.34030 -15.14514 -14.90364 -14.71285 -14.66477 -14.57456 -14.07084 -13.96576 -13.69098 -13.29742 -13.08888 -13.05840 -12.87430 -12.75981 -12.56441 -12.52365 -12.34033 -12.18748 -12.13350 -12.03180 -11.84701 -11.74654 -11.60933 -11.59983 -11.51850 -11.39580 -11.04711 -10.78377 -10.59268 -10.36231 -9.83845 -8.34928 -6.48301 -0.74946 1.31384 1.32268 1.45745 1.75431 2.31612 2.71988 2.83146 2.94647 3.05857 3.10638 3.26003 3.42091 3.55222 3.70475 3.88926 3.95637 4.00199 4.07064 4.19035 4.26299 4.29130 4.33623 4.39960 4.41377 4.46055 4.48003 4.57451 4.63969 4.68780 4.76110 4.78989 4.86131 4.90446 4.92111 5.05436 5.11362 5.12751 5.17307 5.22887 5.25186 5.34913 5.35922 5.38572 5.53310 5.55725 6.16748 6.25170 6.62812 7.23394 8.81548 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.005087 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.527167 B = 5502.543527 C = 5809.273423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.395 6.395 3 C 0.055 3.945 4 H 0.060 0.940 5 C 0.139 3.861 6 H 0.095 0.905 7 C -0.096 4.096 8 H 0.122 0.878 9 C -0.102 4.102 10 C -0.114 4.114 11 H 0.117 0.883 12 C -0.117 4.117 13 C -0.088 4.088 14 H 0.135 0.865 15 C 0.109 3.891 16 N -1.012 6.012 17 S 2.624 3.376 18 O -0.985 6.985 19 O -0.988 6.988 20 C -0.567 4.567 21 C -0.032 4.032 22 C -0.510 4.510 23 H 0.028 0.972 24 C 0.027 3.973 25 N -0.940 5.940 26 Si 0.934 3.066 27 H -0.261 1.261 28 H -0.292 1.292 29 H -0.219 1.219 30 C -0.179 4.179 31 C -0.163 4.163 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.269 0.731 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -10.153 -23.693 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.313 6.313 3 C -0.005 4.005 4 H 0.078 0.922 5 C 0.034 3.966 6 H 0.113 0.887 7 C -0.115 4.115 8 H 0.140 0.860 9 C -0.140 4.140 10 C -0.133 4.133 11 H 0.135 0.865 12 C -0.154 4.154 13 C -0.108 4.108 14 H 0.153 0.847 15 C -0.016 4.016 16 N -0.850 5.850 17 S 2.724 3.276 18 O -0.975 6.975 19 O -0.979 6.979 20 C -0.699 4.699 21 C -0.035 4.035 22 C -0.547 4.547 23 H 0.046 0.954 24 C -0.173 4.173 25 N -0.578 5.578 26 Si 0.756 3.244 27 H -0.186 1.186 28 H -0.218 1.218 29 H -0.141 1.141 30 C -0.216 4.216 31 C -0.201 4.201 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.569 -10.319 -22.720 24.960 hybrid contribution -1.038 1.128 0.604 1.647 sum -0.469 -9.191 -22.116 23.954 Atomic orbital electron populations 1.23017 0.80012 1.04019 1.00639 1.87860 1.20875 1.27536 1.95047 1.24507 0.93719 0.84482 0.97759 0.92194 1.23048 0.95053 0.87828 0.90720 0.88750 1.24078 0.98775 0.95740 0.92938 0.85965 1.23261 0.93543 0.99966 0.97184 1.24328 0.99093 0.95235 0.94614 0.86479 1.23143 0.94700 0.95516 1.02084 1.23294 0.99382 0.95266 0.92842 0.84678 1.22102 0.97519 0.88672 0.93313 1.58782 1.73755 1.20398 1.32098 1.04341 0.77926 0.73231 0.72141 1.93532 1.68104 1.61466 1.74401 1.93462 1.87849 1.37295 1.79262 1.30251 1.22189 1.12110 1.05365 1.18783 0.96032 0.97659 0.90992 1.20386 1.19642 0.93206 1.21474 0.95410 1.25942 0.98545 0.95546 0.97223 1.70067 1.45293 1.03730 1.38711 0.85969 0.79353 0.77684 0.81419 1.18553 1.21819 1.14129 1.23127 1.04727 0.93229 1.00526 1.23086 0.91358 1.02555 1.03126 0.94552 0.92239 0.88144 0.88010 0.90726 0.92245 0.88291 0.91213 0.91703 0.84124 0.84947 0.92176 0.87491 0.89812 0.89755 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.87 113.37 1.23 1.58 16 2 O -0.39 -9.29 10.36 -148.98 -1.54 -10.84 16 3 C 0.05 1.23 2.39 32.63 0.08 1.31 16 4 H 0.06 1.43 5.24 -2.39 -0.01 1.42 16 5 C 0.14 3.58 3.89 46.85 0.18 3.76 16 6 H 0.09 2.77 7.92 -2.39 -0.02 2.75 16 7 C -0.10 -1.65 4.95 -7.36 -0.04 -1.68 16 8 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 9 C -0.10 -1.36 6.42 33.03 0.21 -1.14 16 10 C -0.11 -1.75 4.95 -6.64 -0.03 -1.78 16 11 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 12 C -0.12 -1.71 5.95 33.07 0.20 -1.51 16 13 C -0.09 -1.41 4.22 -8.44 -0.04 -1.44 16 14 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 15 C 0.11 2.75 6.04 86.79 0.52 3.27 16 16 N -1.01 -31.32 2.85 -476.81 -1.36 -32.68 16 17 S 2.62 110.45 5.48 -56.49 -0.31 110.14 16 18 O -0.98 -51.30 16.89 -127.65 -2.16 -53.46 16 19 O -0.99 -45.01 17.43 -127.65 -2.23 -47.24 16 20 C -0.57 -21.80 5.02 71.99 0.36 -21.44 16 21 C -0.03 -1.47 0.79 -52.92 -0.04 -1.51 16 22 C -0.51 -29.83 8.48 25.60 0.22 -29.62 16 23 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 24 C 0.03 1.55 5.47 84.65 0.46 2.01 16 25 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 26 Si 0.93 42.07 24.95 68.60 1.71 43.78 16 27 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 29 H -0.22 -8.39 5.70 99.48 0.57 -7.82 16 30 C -0.18 -7.29 9.96 30.62 0.30 -6.98 16 31 C -0.16 -6.26 7.67 30.62 0.23 -6.02 16 32 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 37 H 0.06 1.05 7.27 -2.39 -0.02 1.03 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.77 7.76 -2.39 -0.02 1.75 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.14 4.24 6.70 -2.39 -0.02 4.22 16 42 H 0.13 4.88 6.54 -2.39 -0.02 4.86 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 46 H 0.08 3.42 7.34 -2.39 -0.02 3.40 16 47 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -81.42 369.78 -0.91 -82.32 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.82 Total: 28.61 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 3.86 Total: -61.21 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.06 Total: -92.11 kcal Atomic # 8 Polarization: -105.61 SS G_CDS: -5.93 Total: -111.53 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.71 Total: 43.78 kcal Atomic # 16 Polarization: 110.45 SS G_CDS: -0.31 Total: 110.14 kcal Total: -81.42 -0.91 -82.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567323747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.838 kcal (2) G-P(sol) polarization free energy of solvation -81.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds