Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35813 * 116.99677 * 2 1 4 4 C 1.38888 * 119.93136 * 180.02562 * 3 2 1 5 5 C 1.37839 * 120.07433 * 179.97438 * 4 3 2 6 6 C 1.39474 * 119.92785 * 359.97438 * 5 4 3 7 7 C 1.48202 * 120.06984 * 180.02562 * 6 5 4 8 8 C 1.39815 * 120.51493 * 180.02562 * 7 6 5 9 9 C 1.38273 * 118.44912 * 179.97438 * 8 7 6 10 10 N 1.32414 * 119.29731 * 359.97438 * 9 8 7 11 11 C 1.32511 * 120.98429 * 0.02562 * 10 9 8 12 12 N 1.38416 * 119.15025 * 179.97438 * 11 10 9 13 13 C 1.47842 * 110.99534 * 120.84216 * 12 11 10 14 14 C 1.54909 * 104.79483 * 213.63548 * 13 12 11 15 15 C 1.55138 * 101.65313 * 37.07277 * 14 13 12 16 16 O 1.42897 * 110.70403 * 82.72581 * 15 14 13 17 17 C 1.50702 * 110.70594 * 205.96518 * 15 14 13 18 18 H 1.07998 * 120.00013 * 355.04847 * 17 15 14 19 19 C 1.37872 * 119.99649 * 175.05237 * 17 15 14 20 20 N 1.31512 * 120.00510 * 0.02562 * 19 17 15 21 21 Si 1.86811 * 119.99785 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46766 * 90.00229 * 21 19 17 23 23 H 1.48497 * 109.47134 * 210.00250 * 21 19 17 24 24 H 1.48500 * 109.46563 * 330.00196 * 21 19 17 25 25 C 1.47443 * 110.99964 * 0.02562 * 12 11 10 26 26 N 1.32379 * 121.69332 * 0.02562 * 11 10 9 27 27 C 1.39468 * 119.86193 * 0.28440 * 6 5 4 28 28 C 1.37843 * 119.92579 * 359.45727 * 27 6 5 29 29 H 1.08995 * 109.47230 * 60.00385 * 1 2 3 30 30 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47387 * 300.00296 * 1 2 3 32 32 H 1.08003 * 119.96005 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.03960 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.77152 * 359.95677 * 8 7 6 35 35 H 1.08002 * 120.35722 * 180.02562 * 9 8 7 36 36 H 1.09000 * 110.37945 * 332.46923 * 13 12 11 37 37 H 1.09009 * 110.37292 * 94.80876 * 13 12 11 38 38 H 1.09003 * 110.99302 * 278.97976 * 14 13 12 39 39 H 1.09000 * 110.99006 * 155.16603 * 14 13 12 40 40 H 0.96703 * 113.99958 * 184.94532 * 16 15 14 41 41 H 0.96996 * 120.00027 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88736 * 242.66183 * 25 12 11 43 43 H 1.09002 * 109.88965 * 3.84886 * 25 12 11 44 44 H 1.07997 * 120.03622 * 179.70141 * 27 6 5 45 45 H 1.08001 * 119.96421 * 180.27802 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4326 1.2812 -0.0005 5 6 4.0613 2.5079 -0.0011 6 6 3.3031 3.6785 -0.0016 7 6 3.9758 4.9990 -0.0028 8 6 3.2249 6.1784 -0.0028 9 6 3.8966 7.3870 -0.0033 10 7 5.2207 7.3924 -0.0033 11 6 5.9075 6.2591 -0.0033 12 7 7.2908 6.3091 -0.0038 13 6 7.8461 5.6213 1.1812 14 6 9.1242 6.4200 1.5394 15 6 8.6825 7.8742 1.2279 16 8 7.9526 8.4266 2.3252 17 6 9.8747 8.7330 0.8927 18 1 10.8722 8.3269 0.9722 19 6 9.6918 10.0372 0.4845 20 7 8.4771 10.5320 0.3882 21 14 11.1696 11.1020 0.0697 22 1 11.4943 10.9579 -1.3722 23 1 10.8552 12.5225 0.3668 24 1 12.3340 10.6717 0.8848 25 6 7.7692 7.7038 -0.0037 26 7 5.3047 5.0806 -0.0038 27 6 1.9104 3.6038 0.0044 28 6 1.2877 2.3741 -0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.0191 0.3744 -0.0014 33 1 5.1399 2.5625 -0.0019 34 1 2.1454 6.1460 -0.0026 35 1 3.3472 8.3168 -0.0029 36 1 7.1349 5.6533 2.0066 37 1 8.0994 4.5895 0.9372 38 1 9.9608 6.1222 0.9073 39 1 9.3736 6.3052 2.5942 40 1 7.5888 9.3058 2.1529 41 1 8.3485 11.4494 0.1007 42 1 8.3344 7.9019 -0.9144 43 1 6.9221 8.3863 0.0656 44 1 1.3206 4.5084 0.0089 45 1 0.2093 2.3155 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591972981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 17.076503 kcal Electronic energy + Delta-G solvation = -28974.560598 eV Core-core repulsion = 24958.388746 eV Total energy + Delta-G solvation = -4016.171852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97508 -40.25112 -38.41088 -37.52955 -34.75788 -33.64731 -32.15940 -32.09759 -31.24799 -30.05126 -28.84588 -27.82729 -27.47961 -25.07508 -24.04386 -23.66453 -22.30544 -21.62123 -20.37206 -19.51017 -18.52828 -17.37308 -17.29831 -16.97393 -16.10388 -16.08435 -15.61015 -15.49750 -14.99092 -14.95477 -14.36968 -14.18157 -14.06651 -13.81392 -13.67796 -13.40804 -13.02950 -12.85257 -12.65696 -12.40054 -12.10239 -12.02302 -11.63000 -11.56693 -11.37054 -11.15834 -10.96090 -10.80717 -10.69096 -10.48869 -10.44229 -10.25213 -10.02066 -9.67680 -9.25518 -9.21038 -8.82072 -8.59413 -8.28775 -8.16952 -7.60946 -6.18741 -4.27042 0.55135 1.14356 1.36151 1.86158 2.92721 3.24904 3.32075 3.35679 3.51152 3.71543 4.15155 4.32689 4.37302 4.45589 4.57393 4.65854 4.75566 4.76566 5.03162 5.06664 5.08413 5.09643 5.28427 5.32303 5.38628 5.47891 5.59567 5.68549 5.79153 5.82097 5.95513 6.00748 6.10144 6.21403 6.25275 6.39031 6.49490 6.53953 6.68124 6.85615 6.98489 7.05782 7.19064 7.24884 7.47776 7.61912 7.81501 7.87825 8.13827 8.61238 8.75948 9.39104 9.47387 10.88130 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.002312 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.934257 B =12108.725321 C =12696.811062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.138 3.862 4 C -0.158 4.158 5 C -0.031 4.031 6 C -0.088 4.088 7 C 0.239 3.761 8 C -0.273 4.273 9 C 0.176 3.824 10 N -0.538 5.538 11 C 0.511 3.489 12 N -0.462 5.462 13 C 0.069 3.931 14 C -0.116 4.116 15 C 0.240 3.760 16 O -0.588 6.588 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.070 3.930 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.028 3.972 26 N -0.533 5.533 27 C -0.051 4.051 28 C -0.215 4.215 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.381 0.619 41 H 0.267 0.733 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 -15.318 -1.189 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.093 3.907 4 C -0.177 4.177 5 C -0.050 4.050 6 C -0.089 4.089 7 C 0.092 3.908 8 C -0.297 4.297 9 C 0.009 3.991 10 N -0.257 5.257 11 C 0.155 3.845 12 N -0.181 5.181 13 C -0.057 4.057 14 C -0.154 4.154 15 C 0.200 3.800 16 O -0.397 6.397 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.098 4.098 26 N -0.252 5.252 27 C -0.071 4.071 28 C -0.234 4.234 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.182 0.818 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.231 0.769 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.080 -16.098 -1.406 22.797 hybrid contribution -0.935 1.719 -0.172 1.964 sum -17.015 -14.379 -1.578 22.333 Atomic orbital electron populations 1.23081 0.78292 1.04020 1.01507 1.86063 1.21505 1.27052 1.88341 1.19230 0.92443 0.84106 0.94966 1.20443 0.91190 0.98828 1.07241 1.21241 1.01155 0.90001 0.92611 1.18380 0.92526 0.90984 1.07009 1.19811 0.88655 0.92385 0.89947 1.22495 1.01920 0.94006 1.11272 1.23016 0.89760 0.97828 0.88506 1.68476 1.08611 1.30643 1.17941 1.21305 0.92204 0.83421 0.87521 1.60205 1.00056 1.19924 1.37964 1.22881 0.96518 0.97790 0.88480 1.22747 0.95694 0.95821 1.01182 1.19665 0.88847 0.89018 0.82504 1.86099 1.73790 1.37767 1.42030 1.21497 0.93016 0.96878 1.45812 0.91797 1.25050 0.96223 0.97870 0.94137 1.69728 1.20249 1.15982 1.47079 0.86460 0.82664 0.79368 0.78713 1.20513 1.21126 1.19807 1.23957 1.01119 0.82966 1.01764 1.67994 1.09838 1.28153 1.19236 1.21006 0.93171 0.97490 0.95391 1.21102 1.00065 0.91955 1.10271 0.92505 0.88202 0.92499 0.84726 0.83647 0.84260 0.81827 0.93490 0.90476 0.90184 0.91057 0.76892 0.92265 0.90269 0.87234 0.85024 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.96 10.49 -19.16 -0.20 -3.16 16 3 C 0.14 1.42 6.69 -39.10 -0.26 1.16 16 4 C -0.16 -1.73 9.97 -39.49 -0.39 -2.12 16 5 C -0.03 -0.39 9.58 -39.27 -0.38 -0.76 16 6 C -0.09 -1.13 5.88 -104.88 -0.62 -1.75 16 7 C 0.24 3.71 6.76 -82.62 -0.56 3.15 16 8 C -0.27 -3.71 9.52 -38.98 -0.37 -4.08 16 9 C 0.18 2.74 11.29 -17.29 -0.20 2.55 16 10 N -0.54 -10.88 7.93 -14.00 -0.11 -11.00 16 11 C 0.51 10.64 6.92 -322.92 -2.23 8.41 16 12 N -0.46 -10.16 5.25 -172.23 -0.90 -11.06 16 13 C 0.07 1.39 6.40 -2.30 -0.01 1.38 16 14 C -0.12 -2.51 6.21 -24.59 -0.15 -2.66 16 15 C 0.24 6.02 0.85 -89.97 -0.08 5.94 16 16 O -0.59 -15.48 13.07 -35.23 -0.46 -15.94 16 17 C -0.53 -14.29 8.12 -34.44 -0.28 -14.57 16 18 H 0.06 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 20 N -0.89 -23.86 10.98 55.43 0.61 -23.25 16 21 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.03 0.67 5.12 -2.86 -0.01 0.66 16 26 N -0.53 -9.90 9.27 -10.47 -0.10 -9.99 16 27 C -0.05 -0.52 9.43 -39.27 -0.37 -0.89 16 28 C -0.22 -1.96 9.02 -39.49 -0.36 -2.31 16 29 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.15 1.89 7.57 -52.49 -0.40 1.50 16 34 H 0.14 1.33 6.31 -52.49 -0.33 1.00 16 35 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.05 0.98 7.79 -51.93 -0.40 0.58 16 37 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 38 H 0.08 1.64 8.04 -51.93 -0.42 1.23 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.38 10.22 7.46 45.56 0.34 10.56 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.08 2.08 7.81 -51.93 -0.41 1.67 16 43 H 0.11 2.83 5.64 -51.93 -0.29 2.53 16 44 H 0.13 1.03 6.26 -52.49 -0.33 0.70 16 45 H 0.13 0.83 6.28 -52.49 -0.33 0.51 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -31.04 369.79 -11.01 -42.05 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -5.37 Total: -3.00 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.50 Total: -55.30 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.66 Total: -19.10 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.04 -11.01 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591972981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.125 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds