Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99846 * 2 1 4 4 C 1.53006 * 109.47220 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46988 * 67.54228 * 4 3 2 6 6 C 1.46499 * 120.00333 * 278.37491 * 5 4 3 7 7 C 1.50700 * 109.47169 * 270.00269 * 6 5 4 8 8 H 1.07997 * 119.99795 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99990 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00034 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47187 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47146 * 120.00220 * 11 9 7 14 14 H 1.48501 * 109.47286 * 239.99632 * 11 9 7 15 15 C 1.34778 * 119.99990 * 98.37883 * 5 4 3 16 16 O 1.21559 * 120.00113 * 186.18118 * 15 5 4 17 17 C 1.47768 * 120.00071 * 6.17186 * 15 5 4 18 18 C 1.40125 * 120.46068 * 135.18824 * 17 15 5 19 19 C 1.38125 * 118.37575 * 179.97438 * 18 17 15 20 20 C 1.39444 * 119.21399 * 359.97438 * 19 18 17 21 21 C 1.48306 * 119.56937 * 180.02562 * 20 19 18 22 22 C 1.39336 * 119.72723 * 180.02562 * 21 20 19 23 23 C 1.38455 * 119.06732 * 179.97438 * 22 21 20 24 24 C 1.38740 * 118.50387 * 359.97438 * 23 22 21 25 25 C 1.38360 * 119.35871 * 0.02562 * 24 23 22 26 26 N 1.31681 * 120.89771 * 359.71908 * 25 24 23 27 27 N 1.32740 * 120.86139 * 0.28284 * 20 19 18 28 28 C 1.31505 * 121.77490 * 359.42509 * 27 20 19 29 29 H 1.08990 * 109.47259 * 60.00301 * 1 2 3 30 30 H 1.09003 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 299.99568 * 1 2 3 32 32 H 1.09001 * 109.47375 * 60.00121 * 3 2 1 33 33 H 1.09006 * 109.47119 * 299.99788 * 3 2 1 34 34 H 1.09001 * 109.46849 * 307.54494 * 4 3 2 35 35 H 1.08996 * 109.47355 * 187.54194 * 4 3 2 36 36 H 1.09002 * 109.47127 * 30.00422 * 6 5 4 37 37 H 1.08999 * 109.47363 * 150.00139 * 6 5 4 38 38 H 0.97001 * 119.99630 * 179.97438 * 10 9 7 39 39 H 1.07998 * 120.81070 * 359.95956 * 18 17 15 40 40 H 1.08004 * 120.39236 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.46494 * 0.02562 * 22 21 20 42 42 H 1.08003 * 120.74959 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.32052 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.54779 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.65176 * 180.27408 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9801 0.6204 -1.2774 6 6 3.9355 -0.8279 -1.4934 7 6 5.2406 -1.4414 -1.0559 8 1 6.0249 -0.8151 -0.6573 9 6 5.4333 -2.8023 -1.1646 10 7 4.4779 -3.5651 -1.6496 11 14 7.0512 -3.5627 -0.6230 12 1 7.9540 -2.4976 -0.1171 13 1 6.7973 -4.5499 0.4569 14 1 7.6885 -4.2453 -1.7776 15 6 4.4302 1.4337 -2.2533 16 8 4.6929 0.9797 -3.3500 17 6 4.6043 2.8773 -1.9904 18 6 5.7611 3.5428 -2.4176 19 6 5.8789 4.8926 -2.1494 20 6 4.8507 5.5434 -1.4683 21 6 4.9687 6.9927 -1.1767 22 6 3.9435 7.6462 -0.4959 23 6 4.0681 8.9993 -0.2303 24 6 5.2152 9.6544 -0.6545 25 6 6.1938 8.9429 -1.3258 26 7 6.0521 7.6550 -1.5610 27 7 3.7701 4.8815 -1.0731 28 6 3.6177 3.5977 -1.3139 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8485 0.5316 0.8139 35 1 3.9781 2.1715 0.1342 36 1 3.1193 -1.2570 -0.9121 37 1 3.7745 -1.0326 -2.5518 38 1 4.6137 -4.5225 -1.7263 39 1 6.5416 3.0131 -2.9435 40 1 6.7568 5.4376 -2.4635 41 1 3.0645 7.1046 -0.1790 42 1 3.2903 9.5327 0.2959 43 1 5.3430 10.7094 -0.4626 44 1 7.0881 9.4497 -1.6570 45 1 2.7223 3.0942 -0.9805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593452586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 12.232290 kcal Electronic energy + Delta-G solvation = -28885.349133 eV Core-core repulsion = 24868.967220 eV Total energy + Delta-G solvation = -4016.381913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92981 -40.04278 -38.56758 -37.52746 -35.00447 -33.37509 -32.96504 -32.58815 -32.11777 -30.27199 -29.57533 -27.25045 -26.04172 -25.13892 -24.34581 -23.03739 -22.85062 -22.77912 -21.82700 -19.10140 -18.00638 -17.33540 -16.93922 -16.46791 -16.35334 -16.19176 -15.72383 -15.48649 -15.20951 -14.93537 -14.75382 -14.63998 -14.39022 -14.06136 -13.82207 -13.58774 -13.41635 -13.12332 -12.89854 -12.71125 -12.18622 -12.02251 -11.87528 -11.74456 -11.69951 -11.27105 -10.93974 -10.84332 -10.48217 -10.28287 -10.18054 -10.06571 -9.98626 -9.79824 -9.63968 -9.57372 -9.43554 -9.04308 -8.56174 -8.36295 -7.70341 -5.98554 -4.02738 0.13009 0.96279 1.16808 1.34415 3.14276 3.32920 3.39917 3.42737 3.46660 3.50303 3.78159 3.98152 3.99210 4.32824 4.47496 4.48809 4.54821 4.73512 4.74946 4.82579 4.91205 5.06928 5.13561 5.24158 5.26968 5.34356 5.37292 5.42642 5.48245 5.51803 5.55988 5.60485 5.67349 5.77254 5.84844 5.88433 6.00601 6.12024 6.20564 6.35558 6.49733 7.19490 7.37500 7.49818 7.57130 7.61493 7.74951 7.98826 8.29441 8.35629 8.84046 9.04076 9.61002 11.09592 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.002814 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.938414 B = 9949.502207 C =11317.470800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.040 3.960 4 C 0.099 3.901 5 N -0.578 5.578 6 C 0.245 3.755 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.547 3.453 16 O -0.529 6.529 17 C -0.153 4.153 18 C -0.033 4.033 19 C -0.131 4.131 20 C 0.162 3.838 21 C 0.169 3.831 22 C -0.131 4.131 23 C -0.081 4.081 24 C -0.169 4.169 25 C 0.101 3.899 26 N -0.472 5.472 27 N -0.473 5.473 28 C 0.113 3.887 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.160 0.840 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 24.564 5.311 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.038 4.038 4 C -0.026 4.026 5 N -0.309 5.309 6 C 0.126 3.874 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.332 3.668 16 O -0.406 6.406 17 C -0.159 4.159 18 C -0.059 4.059 19 C -0.151 4.151 20 C 0.026 3.974 21 C 0.033 3.967 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.190 4.190 25 C -0.058 4.058 26 N -0.181 5.181 27 N -0.182 5.182 28 C -0.046 4.046 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.177 0.823 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.938 23.907 4.703 24.681 hybrid contribution 0.633 -0.196 0.370 0.759 sum -3.305 23.711 5.074 24.472 Atomic orbital electron populations 1.22727 0.81901 1.02778 0.99198 1.88140 1.18864 1.26317 1.95103 1.23201 0.95010 0.85935 0.99656 1.21790 0.91591 1.00192 0.89009 1.48171 1.60473 1.09996 1.12211 1.19479 0.97743 0.71297 0.98859 1.21477 1.00402 0.92433 1.42315 0.92570 1.24904 0.96799 0.97020 0.95271 1.69957 1.32477 1.05177 1.45448 0.86480 0.83733 0.79155 0.78252 1.19867 1.20991 1.20947 1.17977 0.79040 0.84515 0.85250 1.90780 1.50824 1.76072 1.22950 1.21480 0.97014 0.96814 1.00583 1.21708 0.96418 0.93551 0.94217 1.22087 1.00204 0.94379 0.98481 1.19336 0.90803 0.91472 0.95757 1.19292 0.90441 0.91655 0.95310 1.22225 1.00259 0.94846 0.97804 1.21627 0.97531 0.94281 0.97224 1.22264 0.95193 1.01618 0.99886 1.22713 0.98695 0.89279 0.95093 1.67453 1.22536 1.09623 1.18527 1.67423 1.22277 1.09113 1.19385 1.23379 0.98651 0.89008 0.93602 0.94471 0.89614 0.94591 0.92456 0.93374 0.88704 0.89499 0.92594 0.93971 0.92859 0.83425 0.83146 0.83397 0.84480 0.84617 0.82315 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.23 8.91 -35.23 -0.31 -6.54 16 3 C 0.04 0.56 5.25 37.16 0.20 0.76 16 4 C 0.10 1.63 5.34 -4.04 -0.02 1.61 16 5 N -0.58 -12.35 2.46 -176.20 -0.43 -12.79 16 6 C 0.24 6.47 5.08 -5.19 -0.03 6.44 16 7 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 15 C 0.55 11.64 7.30 -12.36 -0.09 11.55 16 16 O -0.53 -13.46 16.54 5.31 0.09 -13.38 16 17 C -0.15 -2.57 5.13 -104.77 -0.54 -3.10 16 18 C -0.03 -0.50 9.83 -38.92 -0.38 -0.88 16 19 C -0.13 -1.75 9.59 -39.17 -0.38 -2.13 16 20 C 0.16 2.19 6.73 -82.88 -0.56 1.63 16 21 C 0.17 2.03 6.72 -82.95 -0.56 1.47 16 22 C -0.13 -1.29 9.61 -39.09 -0.38 -1.66 16 23 C -0.08 -0.59 10.17 -39.32 -0.40 -0.99 16 24 C -0.17 -1.13 10.11 -39.35 -0.40 -1.53 16 25 C 0.10 0.83 11.18 -17.57 -0.20 0.63 16 26 N -0.47 -5.33 9.39 -9.78 -0.09 -5.42 16 27 N -0.47 -6.44 9.37 -9.45 -0.09 -6.53 16 28 C 0.11 1.61 8.57 -17.17 -0.15 1.46 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.65 6.40 -51.93 -0.33 0.31 16 34 H 0.09 1.65 8.13 -51.93 -0.42 1.23 16 35 H 0.09 1.23 4.96 -51.93 -0.26 0.97 16 36 H 0.06 1.52 6.44 -51.93 -0.33 1.19 16 37 H 0.04 1.26 7.35 -51.93 -0.38 0.88 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.15 1.77 7.51 -52.48 -0.39 1.38 16 41 H 0.15 1.37 7.52 -52.48 -0.39 0.98 16 42 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.17 2.17 3.73 -52.49 -0.20 1.97 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -35.49 380.24 -8.21 -43.71 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.64 Total: 1.15 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.18 Total: 3.08 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.12 Total: -50.77 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.23 Total: -19.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.49 -8.21 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593452586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.938 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds