Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99846 * 2 1 4 4 C 1.53006 * 109.47220 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46988 * 67.54228 * 4 3 2 6 6 C 1.46499 * 120.00333 * 278.37491 * 5 4 3 7 7 C 1.50700 * 109.47169 * 270.00269 * 6 5 4 8 8 H 1.07997 * 119.99795 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99990 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00034 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47187 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47146 * 120.00220 * 11 9 7 14 14 H 1.48501 * 109.47286 * 239.99632 * 11 9 7 15 15 C 1.34778 * 119.99990 * 98.37883 * 5 4 3 16 16 O 1.21559 * 120.00113 * 186.18118 * 15 5 4 17 17 C 1.47768 * 120.00071 * 6.17186 * 15 5 4 18 18 C 1.40125 * 120.46068 * 135.18824 * 17 15 5 19 19 C 1.38125 * 118.37575 * 179.97438 * 18 17 15 20 20 C 1.39444 * 119.21399 * 359.97438 * 19 18 17 21 21 C 1.48306 * 119.56937 * 180.02562 * 20 19 18 22 22 C 1.39336 * 119.72723 * 180.02562 * 21 20 19 23 23 C 1.38455 * 119.06732 * 179.97438 * 22 21 20 24 24 C 1.38740 * 118.50387 * 359.97438 * 23 22 21 25 25 C 1.38360 * 119.35871 * 0.02562 * 24 23 22 26 26 N 1.31681 * 120.89771 * 359.71908 * 25 24 23 27 27 N 1.32740 * 120.86139 * 0.28284 * 20 19 18 28 28 C 1.31505 * 121.77490 * 359.42509 * 27 20 19 29 29 H 1.08990 * 109.47259 * 60.00301 * 1 2 3 30 30 H 1.09003 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 299.99568 * 1 2 3 32 32 H 1.09001 * 109.47375 * 60.00121 * 3 2 1 33 33 H 1.09006 * 109.47119 * 299.99788 * 3 2 1 34 34 H 1.09001 * 109.46849 * 307.54494 * 4 3 2 35 35 H 1.08996 * 109.47355 * 187.54194 * 4 3 2 36 36 H 1.09002 * 109.47127 * 30.00422 * 6 5 4 37 37 H 1.08999 * 109.47363 * 150.00139 * 6 5 4 38 38 H 0.97001 * 119.99630 * 179.97438 * 10 9 7 39 39 H 1.07998 * 120.81070 * 359.95956 * 18 17 15 40 40 H 1.08004 * 120.39236 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.46494 * 0.02562 * 22 21 20 42 42 H 1.08003 * 120.74959 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.32052 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.54779 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.65176 * 180.27408 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9801 0.6204 -1.2774 6 6 3.9355 -0.8279 -1.4934 7 6 5.2406 -1.4414 -1.0559 8 1 6.0249 -0.8151 -0.6573 9 6 5.4333 -2.8023 -1.1646 10 7 4.4779 -3.5651 -1.6496 11 14 7.0512 -3.5627 -0.6230 12 1 7.9540 -2.4976 -0.1171 13 1 6.7973 -4.5499 0.4569 14 1 7.6885 -4.2453 -1.7776 15 6 4.4302 1.4337 -2.2533 16 8 4.6929 0.9797 -3.3500 17 6 4.6043 2.8773 -1.9904 18 6 5.7611 3.5428 -2.4176 19 6 5.8789 4.8926 -2.1494 20 6 4.8507 5.5434 -1.4683 21 6 4.9687 6.9927 -1.1767 22 6 3.9435 7.6462 -0.4959 23 6 4.0681 8.9993 -0.2303 24 6 5.2152 9.6544 -0.6545 25 6 6.1938 8.9429 -1.3258 26 7 6.0521 7.6550 -1.5610 27 7 3.7701 4.8815 -1.0731 28 6 3.6177 3.5977 -1.3139 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8485 0.5316 0.8139 35 1 3.9781 2.1715 0.1342 36 1 3.1193 -1.2570 -0.9121 37 1 3.7745 -1.0326 -2.5518 38 1 4.6137 -4.5225 -1.7263 39 1 6.5416 3.0131 -2.9435 40 1 6.7568 5.4376 -2.4635 41 1 3.0645 7.1046 -0.1790 42 1 3.2903 9.5327 0.2959 43 1 5.3430 10.7094 -0.4626 44 1 7.0881 9.4497 -1.6570 45 1 2.7223 3.0942 -0.9805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593452586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -11.689981 kcal Electronic energy + Delta-G solvation = -28886.386480 eV Core-core repulsion = 24868.967220 eV Total energy + Delta-G solvation = -4017.419260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04355 -41.01163 -39.89716 -38.83036 -36.68078 -34.97516 -34.06682 -33.86510 -33.04394 -31.52462 -30.80449 -29.06805 -27.15820 -26.41847 -25.24360 -24.70309 -24.06395 -23.74699 -22.93220 -20.65316 -18.90024 -18.70093 -18.58621 -18.10308 -17.33401 -17.16617 -16.86603 -16.76907 -16.52193 -16.24188 -16.02537 -15.75952 -15.55891 -15.39523 -15.12796 -14.51379 -14.49078 -14.34199 -14.13739 -14.02836 -13.72988 -13.33300 -13.22716 -13.08089 -12.95164 -12.73317 -12.61515 -12.55683 -12.20639 -12.01737 -11.67991 -11.30857 -11.14942 -10.91177 -10.75538 -10.67507 -10.61677 -10.51967 -10.34237 -9.57398 -9.45058 -8.19910 -6.34141 -0.84885 0.05629 0.33676 0.46233 1.36452 1.38498 1.50189 1.68076 2.13646 2.40776 2.49488 2.61190 2.88717 3.03721 3.10312 3.38602 3.42928 3.61942 3.75099 3.95444 4.05245 4.06746 4.13515 4.16586 4.20295 4.26202 4.29859 4.42155 4.51568 4.54508 4.58775 4.61878 4.85288 4.87196 4.89442 4.93511 4.94946 5.19096 5.22197 5.26480 5.30284 5.40719 5.52688 5.76239 5.83022 6.08536 6.31027 6.57635 6.62986 6.74706 6.95773 7.17726 7.37351 8.87874 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.002814 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.938414 B = 9949.502207 C =11317.470800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.041 3.959 4 C 0.095 3.905 5 N -0.583 5.583 6 C 0.265 3.735 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.267 1.267 13 H -0.269 1.269 14 H -0.281 1.281 15 C 0.545 3.455 16 O -0.586 6.586 17 C -0.178 4.178 18 C -0.035 4.035 19 C -0.130 4.130 20 C 0.172 3.828 21 C 0.132 3.868 22 C -0.136 4.136 23 C -0.080 4.080 24 C -0.152 4.152 25 C 0.089 3.911 26 N -0.496 5.496 27 N -0.469 5.469 28 C 0.127 3.873 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.045 0.955 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.186 0.814 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 28.399 7.486 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.036 4.036 4 C -0.028 4.028 5 N -0.312 5.312 6 C 0.145 3.855 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.565 5.565 11 Si 0.792 3.208 12 H -0.191 1.191 13 H -0.195 1.195 14 H -0.207 1.207 15 C 0.333 3.667 16 O -0.467 6.467 17 C -0.183 4.183 18 C -0.061 4.061 19 C -0.150 4.150 20 C 0.035 3.965 21 C -0.003 4.003 22 C -0.157 4.157 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.070 4.070 26 N -0.206 5.206 27 N -0.178 5.178 28 C -0.032 4.032 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.167 0.833 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.203 0.797 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.792 27.771 6.922 28.871 hybrid contribution 0.559 -1.127 -0.284 1.290 sum -3.233 26.644 6.637 27.648 Atomic orbital electron populations 1.22889 0.79870 1.03227 1.00982 1.88072 1.21283 1.28126 1.95492 1.23262 0.92828 0.85472 1.02028 1.22082 0.93842 1.00786 0.86044 1.48097 1.60632 1.08235 1.14206 1.18855 0.96697 0.74589 0.95386 1.21744 1.01026 0.93018 1.42536 0.92992 1.25837 1.00609 0.97505 0.95102 1.70081 1.34615 1.05640 1.46212 0.85376 0.79012 0.78372 0.78082 1.19139 1.19462 1.20657 1.18601 0.77528 0.86346 0.84205 1.90729 1.53185 1.77669 1.25162 1.21057 0.99164 0.93977 1.04115 1.21747 0.95945 0.94377 0.94017 1.22173 1.00977 0.93358 0.98521 1.19806 0.90062 0.92732 0.93850 1.19217 0.92089 0.90889 0.98065 1.22352 0.99667 0.96169 0.97464 1.22043 0.98573 0.93285 0.96669 1.22720 0.93861 1.03228 0.97337 1.23297 1.00202 0.88454 0.95036 1.67386 1.22649 1.11269 1.19273 1.67555 1.22368 1.08336 1.19570 1.23498 0.98168 0.89169 0.92384 0.93726 0.90012 0.91616 0.88066 0.92656 0.89872 0.86871 0.93756 0.98811 0.92474 0.83890 0.81682 0.83317 0.81310 0.80905 0.79720 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -14.08 8.91 -148.98 -1.33 -15.41 16 3 C 0.04 1.12 5.25 71.98 0.38 1.50 16 4 C 0.10 3.16 5.34 86.38 0.46 3.62 16 5 N -0.58 -26.19 2.46 -829.65 -2.04 -28.23 16 6 C 0.27 14.96 5.08 85.63 0.43 15.40 16 7 C -0.54 -32.45 9.39 25.60 0.24 -32.21 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.50 5.46 84.65 0.46 0.96 16 10 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 11 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.55 24.57 7.30 86.76 0.63 25.20 16 16 O -0.59 -32.14 16.54 -3.90 -0.06 -32.21 16 17 C -0.18 -6.11 5.13 -19.96 -0.10 -6.21 16 18 C -0.03 -1.08 9.83 22.70 0.22 -0.86 16 19 C -0.13 -3.44 9.59 22.53 0.22 -3.22 16 20 C 0.17 4.45 6.73 41.98 0.28 4.73 16 21 C 0.13 2.94 6.72 41.96 0.28 3.22 16 22 C -0.14 -2.32 9.61 22.59 0.22 -2.10 16 23 C -0.08 -0.84 10.17 22.44 0.23 -0.62 16 24 C -0.15 -1.33 10.11 22.42 0.23 -1.10 16 25 C 0.09 1.16 11.18 84.74 0.95 2.11 16 26 N -0.50 -10.21 9.39 -184.84 -1.73 -11.94 16 27 N -0.47 -12.16 9.37 -183.82 -1.72 -13.88 16 28 C 0.13 3.53 8.57 85.08 0.73 4.26 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.43 6.40 -2.38 -0.02 1.41 16 34 H 0.08 2.95 8.13 -2.39 -0.02 2.93 16 35 H 0.11 3.13 4.96 -2.39 -0.01 3.11 16 36 H 0.04 2.58 6.44 -2.39 -0.02 2.56 16 37 H -0.01 -0.41 7.35 -2.39 -0.02 -0.42 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.17 3.80 7.51 -2.91 -0.02 3.78 16 41 H 0.15 2.41 7.52 -2.91 -0.02 2.39 16 42 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.17 0.24 8.06 -2.91 -0.02 0.21 16 44 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.19 4.47 3.73 -2.91 -0.01 4.46 16 Total: -1.00 -82.81 380.24 3.55 -79.27 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.02 Total: 14.96 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 7.11 Total: 16.58 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -5.22 Total: -111.32 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.39 Total: -47.61 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -82.81 3.55 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593452586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -82.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds