Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99971 * 2 1 4 4 C 1.38727 * 120.05653 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94541 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05426 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94242 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.56439 * 334.31229 * 7 6 5 9 9 C 1.53007 * 117.49449 * 188.62152 * 7 6 5 10 10 C 1.52995 * 117.49713 * 120.00259 * 7 6 5 11 11 H 1.09008 * 117.51794 * 0.02562 * 10 7 6 12 12 C 1.50700 * 117.49945 * 214.97803 * 10 7 6 13 13 O 1.21289 * 119.99831 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00054 * 179.97438 * 12 10 7 15 15 C 1.40155 * 119.99935 * 179.97438 * 14 12 10 16 16 C 1.40404 * 125.97676 * 0.02562 * 15 14 12 17 17 C 1.35235 * 107.87251 * 179.97438 * 16 15 14 18 18 N 1.34971 * 107.86261 * 0.02562 * 17 16 15 19 19 C 1.46491 * 125.97907 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46957 * 124.99763 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.31230 * 125.97239 * 180.26236 * 15 14 12 29 29 C 1.38270 * 120.10946 * 0.25437 * 6 5 4 30 30 C 1.38142 * 120.05611 * 359.44679 * 29 6 5 31 31 H 1.09006 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47508 * 300.00302 * 1 2 3 33 33 H 1.08998 * 109.46693 * 60.00593 * 1 2 3 34 34 H 1.07999 * 120.03078 * 0.04424 * 4 3 2 35 35 H 1.07998 * 119.97506 * 179.97438 * 5 4 3 36 36 H 1.09005 * 117.49430 * 145.02253 * 9 7 6 37 37 H 1.08992 * 117.50161 * 0.02562 * 9 7 6 38 38 H 0.97004 * 119.99979 * 0.02562 * 14 12 10 39 39 H 1.08001 * 126.06298 * 359.95368 * 16 15 14 40 40 H 1.07996 * 126.07117 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.47166 * 5.00029 * 19 18 17 42 42 H 1.08994 * 109.47507 * 244.99735 * 19 18 17 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 44 44 H 1.08000 * 119.96854 * 179.70696 * 29 6 5 45 45 H 1.07999 * 120.02701 * 180.25416 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 4.9889 5.0351 0.4294 9 6 3.1109 6.2571 0.2068 10 6 3.7024 5.9569 -1.1719 11 1 3.0207 5.6034 -1.9456 12 6 4.8311 6.8332 -1.6507 13 8 5.9142 6.7778 -1.1075 14 7 4.6371 7.6783 -2.6825 15 6 5.6867 8.4937 -3.1274 16 6 6.9846 8.5320 -2.5934 17 6 7.6958 9.4427 -3.2961 18 7 6.8833 9.9640 -4.2395 19 6 7.2501 10.9879 -5.2209 20 6 6.9521 10.4827 -6.6091 21 1 6.5312 9.4976 -6.7465 22 6 7.2110 11.2806 -7.7034 23 7 7.7232 12.4803 -7.5360 24 14 6.8344 10.6574 -9.4236 25 1 5.4451 11.0306 -9.7922 26 1 7.7835 11.2668 -10.3896 27 1 6.9753 9.1795 -9.4566 28 7 5.6268 9.3579 -4.1131 29 6 1.9209 3.6047 0.0069 30 6 1.2914 2.3751 0.0002 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 4.0209 0.3800 0.0002 35 1 5.1344 2.5751 0.0019 36 1 3.5383 7.0883 0.7676 37 1 2.0406 6.1006 0.3406 38 1 3.7708 7.7229 -3.1166 39 1 7.3502 7.9396 -1.7677 40 1 8.7299 9.7066 -3.1312 41 1 8.3141 11.2087 -5.1352 42 1 6.6746 11.8942 -5.0327 43 1 7.9056 13.0415 -8.3059 44 1 1.3341 4.5114 0.0121 45 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597262495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 63.030955 kcal Electronic energy + Delta-G solvation = -27244.801009 eV Core-core repulsion = 23230.621892 eV Total energy + Delta-G solvation = -4014.179117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88155 -40.51484 -39.64659 -38.23824 -36.14978 -34.70596 -33.34550 -31.43909 -31.03635 -30.33344 -29.32283 -27.75590 -26.86259 -24.92246 -24.03911 -22.84941 -22.57764 -21.35833 -20.65341 -19.96528 -19.48389 -18.60627 -17.46040 -16.71563 -16.59686 -16.39583 -16.13450 -15.82656 -15.33769 -15.22757 -14.88779 -14.70673 -14.22672 -14.04850 -13.89222 -13.71825 -13.23494 -13.13039 -12.88314 -12.44903 -12.36875 -12.34843 -12.24247 -11.87930 -11.78305 -11.66323 -11.21285 -11.05347 -10.89674 -10.73539 -10.68752 -10.43482 -10.26236 -10.00918 -9.59871 -9.50097 -9.34700 -8.64016 -8.37024 -8.13762 -7.47711 -6.25057 -4.30096 0.98730 1.00344 2.21645 2.72336 2.87676 2.89537 3.23399 3.26341 3.29189 3.34605 3.62028 3.82478 3.87378 4.28313 4.32903 4.38252 4.46340 4.51173 4.60582 4.66363 4.70671 4.85779 4.94472 5.00425 5.01949 5.10150 5.15551 5.30608 5.37210 5.54925 5.63830 5.68604 5.76268 5.81523 5.93741 6.02749 6.26862 6.31906 6.39725 6.48382 6.60956 6.85380 7.00043 7.04508 7.40673 7.56854 7.70519 7.88333 8.03829 8.25654 8.62774 8.79493 9.35550 10.83655 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.001758 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.234366 B =15922.452019 C =16833.430015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.149 4.149 5 C -0.067 4.067 6 C -0.089 4.089 7 C -0.075 4.075 8 H 0.129 0.871 9 C -0.145 4.145 10 C -0.175 4.175 11 H 0.128 0.872 12 C 0.549 3.451 13 O -0.518 6.518 14 N -0.626 5.626 15 C 0.256 3.744 16 C -0.288 4.288 17 C 0.051 3.949 18 N -0.318 5.318 19 C 0.258 3.742 20 C -0.529 4.529 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.304 5.304 29 C -0.079 4.079 30 C -0.206 4.206 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.412 0.588 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.267 0.733 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 -20.236 18.065 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.167 4.167 5 C -0.085 4.085 6 C -0.089 4.089 7 C -0.093 4.093 8 H 0.147 0.853 9 C -0.182 4.182 10 C -0.197 4.197 11 H 0.146 0.854 12 C 0.335 3.665 13 O -0.392 6.392 14 N -0.273 5.273 15 C 0.003 3.997 16 C -0.319 4.319 17 C -0.099 4.099 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.136 5.136 29 C -0.097 4.097 30 C -0.224 4.224 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.247 0.753 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.577 -19.689 17.362 29.554 hybrid contribution -0.406 -0.324 -0.815 0.967 sum -13.983 -20.013 16.547 29.493 Atomic orbital electron populations 1.23060 0.78349 1.03980 1.01404 1.86073 1.21428 1.27027 1.88735 1.19074 0.92431 0.84152 0.96642 1.20436 0.91354 0.98700 1.06232 1.20856 1.00254 0.90653 0.96735 1.19032 0.93004 0.93265 1.03633 1.21018 1.00911 0.87681 0.99698 0.85278 1.23170 0.99946 0.99501 0.95578 1.22272 1.00615 1.02827 0.93941 0.85445 1.19545 0.88635 0.79345 0.78969 1.90636 1.25729 1.66818 1.55994 1.42382 1.13173 1.38214 1.33515 1.19115 0.89060 0.95255 0.96231 1.21514 0.92798 1.08661 1.08924 1.22566 0.97961 0.97245 0.92098 1.49086 1.05312 1.30622 1.24997 1.19750 0.96870 0.83995 0.85332 1.21261 1.43295 1.02715 0.89464 0.91310 1.24946 0.94661 0.94674 0.99792 1.69920 1.43195 1.08789 1.31414 0.86321 0.78271 0.79098 0.82768 1.20337 1.20969 1.19723 1.77337 1.03897 1.13122 1.19199 1.20864 0.93946 0.97219 0.97639 1.21196 1.00009 0.92235 1.08984 0.88235 0.92623 0.92583 0.85048 0.84873 0.87449 0.87376 0.75317 0.82308 0.81468 0.92498 0.93711 0.92324 0.85443 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.72 10.50 -19.44 -0.20 -2.92 16 3 C 0.12 1.09 6.69 -39.22 -0.26 0.82 16 4 C -0.15 -1.31 9.99 -39.44 -0.39 -1.70 16 5 C -0.07 -0.58 9.73 -39.60 -0.39 -0.97 16 6 C -0.09 -0.78 5.61 -104.60 -0.59 -1.36 16 7 C -0.07 -0.68 5.55 -91.77 -0.51 -1.19 16 8 H 0.13 1.31 7.67 -51.93 -0.40 0.91 16 9 C -0.14 -1.12 9.56 -26.73 -0.26 -1.38 16 10 C -0.18 -1.69 5.82 -91.78 -0.53 -2.22 16 11 H 0.13 1.02 8.14 -51.92 -0.42 0.59 16 12 C 0.55 7.73 7.58 -10.99 -0.08 7.64 16 13 O -0.52 -8.81 13.39 5.55 0.07 -8.74 16 14 N -0.63 -9.65 5.45 -11.13 -0.06 -9.71 16 15 C 0.26 5.15 8.11 -154.38 -1.25 3.90 16 16 C -0.29 -5.72 9.60 -39.84 -0.38 -6.10 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.43 3.67 -62.57 -0.23 -7.66 16 19 C 0.26 6.57 6.26 -5.20 -0.03 6.54 16 20 C -0.53 -14.76 9.24 -34.44 -0.32 -15.08 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 24 Si 0.91 21.40 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 N -0.30 -7.03 12.43 31.44 0.39 -6.64 16 29 C -0.08 -0.60 9.30 -39.61 -0.37 -0.97 16 30 C -0.21 -1.58 9.04 -39.43 -0.36 -1.93 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 0.60 6.17 -51.93 -0.32 0.28 16 38 H 0.41 5.17 8.82 -40.82 -0.36 4.81 16 39 H 0.16 3.05 5.92 -52.49 -0.31 2.74 16 40 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 0.73 6.01 -52.49 -0.32 0.41 16 45 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -33.74 385.49 -9.28 -43.02 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.75 Total: 5.47 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -5.02 Total: -10.44 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.84 Total: -48.57 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.13 Total: -11.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.74 -9.28 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597262495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.049 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds