Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99971 * 2 1 4 4 C 1.38727 * 120.05653 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94541 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05426 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94242 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.56439 * 334.31229 * 7 6 5 9 9 C 1.53007 * 117.49449 * 188.62152 * 7 6 5 10 10 C 1.52995 * 117.49713 * 120.00259 * 7 6 5 11 11 H 1.09008 * 117.51794 * 0.02562 * 10 7 6 12 12 C 1.50700 * 117.49945 * 214.97803 * 10 7 6 13 13 O 1.21289 * 119.99831 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00054 * 179.97438 * 12 10 7 15 15 C 1.40155 * 119.99935 * 179.97438 * 14 12 10 16 16 C 1.40404 * 125.97676 * 0.02562 * 15 14 12 17 17 C 1.35235 * 107.87251 * 179.97438 * 16 15 14 18 18 N 1.34971 * 107.86261 * 0.02562 * 17 16 15 19 19 C 1.46491 * 125.97907 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46957 * 124.99763 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.31230 * 125.97239 * 180.26236 * 15 14 12 29 29 C 1.38270 * 120.10946 * 0.25437 * 6 5 4 30 30 C 1.38142 * 120.05611 * 359.44679 * 29 6 5 31 31 H 1.09006 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47508 * 300.00302 * 1 2 3 33 33 H 1.08998 * 109.46693 * 60.00593 * 1 2 3 34 34 H 1.07999 * 120.03078 * 0.04424 * 4 3 2 35 35 H 1.07998 * 119.97506 * 179.97438 * 5 4 3 36 36 H 1.09005 * 117.49430 * 145.02253 * 9 7 6 37 37 H 1.08992 * 117.50161 * 0.02562 * 9 7 6 38 38 H 0.97004 * 119.99979 * 0.02562 * 14 12 10 39 39 H 1.08001 * 126.06298 * 359.95368 * 16 15 14 40 40 H 1.07996 * 126.07117 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.47166 * 5.00029 * 19 18 17 42 42 H 1.08994 * 109.47507 * 244.99735 * 19 18 17 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 44 44 H 1.08000 * 119.96854 * 179.70696 * 29 6 5 45 45 H 1.07999 * 120.02701 * 180.25416 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 4.9889 5.0351 0.4294 9 6 3.1109 6.2571 0.2068 10 6 3.7024 5.9569 -1.1719 11 1 3.0207 5.6034 -1.9456 12 6 4.8311 6.8332 -1.6507 13 8 5.9142 6.7778 -1.1075 14 7 4.6371 7.6783 -2.6825 15 6 5.6867 8.4937 -3.1274 16 6 6.9846 8.5320 -2.5934 17 6 7.6958 9.4427 -3.2961 18 7 6.8833 9.9640 -4.2395 19 6 7.2501 10.9879 -5.2209 20 6 6.9521 10.4827 -6.6091 21 1 6.5312 9.4976 -6.7465 22 6 7.2110 11.2806 -7.7034 23 7 7.7232 12.4803 -7.5360 24 14 6.8344 10.6574 -9.4236 25 1 5.4451 11.0306 -9.7922 26 1 7.7835 11.2668 -10.3896 27 1 6.9753 9.1795 -9.4566 28 7 5.6268 9.3579 -4.1131 29 6 1.9209 3.6047 0.0069 30 6 1.2914 2.3751 0.0002 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 4.0209 0.3800 0.0002 35 1 5.1344 2.5751 0.0019 36 1 3.5383 7.0883 0.7676 37 1 2.0406 6.1006 0.3406 38 1 3.7708 7.7229 -3.1166 39 1 7.3502 7.9396 -1.7677 40 1 8.7299 9.7066 -3.1312 41 1 8.3141 11.2087 -5.1352 42 1 6.6746 11.8942 -5.0327 43 1 7.9056 13.0415 -8.3059 44 1 1.3341 4.5114 0.0121 45 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597262495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 43.579083 kcal Electronic energy + Delta-G solvation = -27245.644506 eV Core-core repulsion = 23230.621892 eV Total energy + Delta-G solvation = -4015.022614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25077 -41.33232 -40.69837 -38.99600 -36.91702 -36.14906 -35.26428 -32.81566 -32.00813 -31.02747 -30.91680 -28.75728 -28.12380 -26.15818 -24.66356 -24.56282 -23.18475 -22.63083 -21.74361 -21.17959 -20.73380 -19.15589 -18.69865 -18.46077 -18.13167 -17.10190 -17.08159 -16.61353 -16.57219 -16.34948 -16.16985 -15.72020 -15.60408 -15.36394 -14.64355 -14.54147 -14.37294 -14.25173 -13.91503 -13.82561 -13.74244 -13.66045 -13.15937 -12.93054 -12.83745 -12.73610 -12.41578 -12.30520 -12.25224 -12.07317 -11.79254 -11.61165 -11.44256 -11.39776 -11.30124 -10.86884 -10.72761 -9.94060 -9.76880 -9.13477 -8.97970 -8.33904 -6.48024 0.35895 0.41222 0.91185 1.33866 1.37874 1.38845 1.42859 1.50665 2.16369 2.28394 2.39877 2.41588 2.64458 2.97875 3.07803 3.48010 3.66186 3.82387 3.87042 3.96046 4.00482 4.12289 4.24784 4.27119 4.36048 4.41786 4.43285 4.57753 4.72915 4.74629 4.77415 4.80050 4.89074 4.91942 4.97500 5.02782 5.10358 5.13062 5.18289 5.34650 5.42502 5.55765 5.69802 5.79074 5.82604 5.92417 6.23832 6.29948 6.46976 6.63829 7.00142 7.12432 7.21946 8.73726 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.001758 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.234366 B =15922.452019 C =16833.430015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.165 4.165 5 C -0.079 4.079 6 C -0.098 4.098 7 C -0.075 4.075 8 H 0.113 0.887 9 C -0.124 4.124 10 C -0.177 4.177 11 H 0.151 0.849 12 C 0.548 3.452 13 O -0.549 6.549 14 N -0.621 5.621 15 C 0.264 3.736 16 C -0.295 4.295 17 C 0.056 3.944 18 N -0.344 5.344 19 C 0.272 3.728 20 C -0.549 4.549 21 H 0.052 0.948 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.346 5.346 29 C -0.077 4.077 30 C -0.207 4.207 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.425 0.575 39 H 0.167 0.833 40 H 0.201 0.799 41 H 0.059 0.941 42 H 0.022 0.978 43 H 0.273 0.727 44 H 0.153 0.847 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.671 -21.275 18.361 32.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.097 4.097 6 C -0.098 4.098 7 C -0.094 4.094 8 H 0.131 0.869 9 C -0.161 4.161 10 C -0.198 4.198 11 H 0.169 0.831 12 C 0.337 3.663 13 O -0.425 6.425 14 N -0.270 5.270 15 C 0.010 3.990 16 C -0.326 4.326 17 C -0.093 4.093 18 N -0.125 5.125 19 C 0.153 3.847 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.182 4.182 23 N -0.558 5.558 24 Si 0.796 3.204 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 N -0.177 5.177 29 C -0.094 4.094 30 C -0.225 4.225 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.158 0.842 38 H 0.263 0.737 39 H 0.185 0.815 40 H 0.218 0.782 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.170 0.830 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.474 -20.745 17.679 31.343 hybrid contribution 0.146 -0.107 -0.769 0.790 sum -15.328 -20.853 16.910 30.915 Atomic orbital electron populations 1.23330 0.76495 1.05464 1.02314 1.86047 1.23457 1.27123 1.88718 1.19289 0.92637 0.84878 0.96748 1.20581 0.91940 0.98916 1.06907 1.20983 1.00608 0.90976 0.97090 1.19057 0.93654 0.92713 1.04402 1.20936 1.00767 0.88501 0.99205 0.86911 1.23332 1.01429 0.98226 0.93092 1.22264 0.99670 1.02597 0.95304 0.83150 1.20395 0.89405 0.78744 0.77757 1.90612 1.27469 1.67645 1.56777 1.42579 1.12763 1.37709 1.33960 1.19491 0.90348 0.94316 0.94849 1.21716 0.92926 1.08806 1.09158 1.23172 0.99146 0.96290 0.90646 1.48845 1.06239 1.31505 1.25955 1.19344 0.96366 0.83836 0.85111 1.21403 1.43911 1.02269 0.91126 0.93008 1.25738 0.94187 0.94769 1.03462 1.69995 1.43478 1.09600 1.32741 0.85343 0.78444 0.78378 0.78224 1.19727 1.19642 1.19823 1.77255 1.04384 1.14882 1.21183 1.21131 0.93531 0.98204 0.96577 1.21473 1.01165 0.91742 1.08167 0.86651 0.91512 0.91757 0.84825 0.84723 0.87904 0.84236 0.73730 0.81547 0.78204 0.92328 0.96005 0.91817 0.82988 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.41 10.50 -92.48 -0.97 -6.38 16 3 C 0.11 1.82 6.69 22.51 0.15 1.97 16 4 C -0.16 -2.86 9.99 22.36 0.22 -2.64 16 5 C -0.08 -1.34 9.73 22.25 0.22 -1.12 16 6 C -0.10 -1.54 5.61 -19.85 -0.11 -1.65 16 7 C -0.08 -1.24 5.55 -11.54 -0.06 -1.31 16 8 H 0.11 2.25 7.67 -2.39 -0.02 2.23 16 9 C -0.12 -1.56 9.56 30.60 0.29 -1.26 16 10 C -0.18 -3.03 5.82 -11.54 -0.07 -3.09 16 11 H 0.15 1.91 8.14 -2.38 -0.02 1.89 16 12 C 0.55 14.85 7.58 87.66 0.66 15.51 16 13 O -0.55 -18.47 13.39 -3.06 -0.04 -18.52 16 14 N -0.62 -18.63 5.45 -307.51 -1.68 -20.30 16 15 C 0.26 10.62 8.11 133.32 1.08 11.70 16 16 C -0.30 -11.66 9.60 22.10 0.21 -11.45 16 17 C 0.06 2.24 11.44 83.52 0.96 3.19 16 18 N -0.34 -16.31 3.67 -351.87 -1.29 -17.60 16 19 C 0.27 14.22 6.26 85.64 0.54 14.76 16 20 C -0.55 -31.19 9.24 25.60 0.24 -30.95 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.02 1.05 5.46 84.66 0.46 1.51 16 23 N -0.92 -52.17 13.29 21.45 0.28 -51.88 16 24 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 N -0.35 -16.23 12.43 -54.45 -0.68 -16.91 16 29 C -0.08 -0.95 9.30 22.25 0.21 -0.74 16 30 C -0.21 -2.67 9.04 22.37 0.20 -2.46 16 31 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 33 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 34 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.14 0.90 6.17 -2.39 -0.01 0.88 16 38 H 0.42 10.17 8.82 -92.71 -0.82 9.35 16 39 H 0.17 6.34 5.92 -2.91 -0.02 6.32 16 40 H 0.20 6.32 8.06 -2.91 -0.02 6.29 16 41 H 0.06 2.99 8.07 -2.38 -0.02 2.97 16 42 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 44 H 0.15 1.05 6.01 -2.91 -0.02 1.03 16 45 H 0.15 1.17 6.30 -2.91 -0.02 1.15 16 Total: -1.00 -73.77 385.49 4.19 -69.58 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.22 Total: 23.03 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.31 Total: -6.79 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -3.36 Total: -106.69 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.01 Total: -24.90 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.77 4.19 -69.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597262495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.160 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds