Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99729 * 2 1 4 4 C 1.53003 * 109.46764 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47113 * 65.00081 * 4 3 2 6 6 C 1.46494 * 119.99600 * 269.99880 * 5 4 3 7 7 C 1.52995 * 109.47313 * 267.89607 * 6 5 4 8 8 C 1.47203 * 109.47464 * 184.73681 * 7 6 5 9 9 N 6.00553 * 137.02597 * 199.12224 * 2 1 3 10 10 C 1.34778 * 119.99968 * 89.99575 * 5 4 3 11 11 O 1.21659 * 119.99889 * 4.99447 * 10 5 4 12 12 C 1.46884 * 119.99629 * 184.99294 * 10 5 4 13 13 C 1.36129 * 125.43883 * 340.61202 * 12 10 5 14 14 C 1.41700 * 107.74501 * 180.24177 * 13 12 10 15 15 C 1.40026 * 133.34498 * 179.82154 * 14 13 12 16 16 C 1.36577 * 119.82673 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.60126 * 359.97438 * 16 15 14 18 18 C 1.37838 * 120.63578 * 359.97438 * 17 16 15 19 19 C 1.39089 * 119.81312 * 0.02562 * 18 17 16 20 20 N 1.37832 * 133.16399 * 180.02562 * 19 18 17 21 21 C 1.36895 * 125.62361 * 359.93561 * 20 19 18 22 22 H 1.07991 * 120.00197 * 226.65107 * 21 20 19 23 23 C 1.39011 * 119.99785 * 46.64509 * 21 20 19 24 24 N 1.31344 * 120.00063 * 188.22607 * 23 21 20 25 25 Si 1.86803 * 119.99802 * 7.95749 * 23 21 20 26 26 H 1.48502 * 109.46818 * 264.18233 * 25 23 21 27 27 H 1.48498 * 109.47551 * 24.18155 * 25 23 21 28 28 H 1.48495 * 109.47320 * 144.18717 * 25 23 21 29 29 H 1.09000 * 109.46851 * 300.00435 * 1 2 3 30 30 H 1.08998 * 109.47022 * 59.99768 * 1 2 3 31 31 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47348 * 60.00225 * 3 2 1 33 33 H 1.09000 * 109.46919 * 299.99613 * 3 2 1 34 34 H 1.08998 * 109.47293 * 304.99994 * 4 3 2 35 35 H 1.08999 * 109.46856 * 184.99848 * 4 3 2 36 36 H 1.09005 * 109.47745 * 27.89912 * 6 5 4 37 37 H 1.09009 * 109.46948 * 147.89643 * 6 5 4 38 38 H 1.09000 * 109.47286 * 304.74212 * 7 6 5 39 39 H 1.09003 * 109.47238 * 64.74000 * 7 6 5 40 40 H 1.07990 * 126.12554 * 0.02562 * 13 12 10 41 41 H 1.07994 * 120.08549 * 359.93888 * 15 14 13 42 42 H 1.07998 * 119.69855 * 180.02562 * 16 15 14 43 43 H 1.08005 * 119.67929 * 180.02562 * 17 16 15 44 44 H 1.07999 * 120.09532 * 179.97438 * 18 17 16 45 45 H 0.96998 * 119.99928 * 179.72076 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.5377 -1.2999 -0.9857 8 6 5.6991 -2.7495 -1.1849 9 7 5.8231 -3.8679 -1.3411 10 6 4.2633 1.3329 -2.3201 11 8 4.2438 2.5452 -2.2202 12 6 4.5993 0.7071 -3.6058 13 6 5.0171 -0.5776 -3.7730 14 6 5.2392 -0.7828 -5.1574 15 6 5.6700 -1.8828 -5.9091 16 6 5.7898 -1.7740 -7.2652 17 6 5.4877 -0.5808 -7.9080 18 6 5.0608 0.5155 -7.1897 19 6 4.9310 0.4288 -5.8076 20 7 4.5375 1.3274 -4.8394 21 6 4.1555 2.6230 -5.0619 22 1 4.5526 3.4164 -4.4463 23 6 3.2564 2.9173 -6.0805 24 7 3.0131 4.1676 -6.4007 25 14 2.4000 1.5342 -6.9988 26 1 3.1446 1.2342 -8.2481 27 1 2.3607 0.3215 -6.1427 28 1 1.0141 1.9475 -7.3357 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1765 0.0902 36 1 3.4117 -1.3626 -0.6439 37 1 3.8774 -1.2161 -2.3557 38 1 6.2374 -0.7648 -1.6277 39 1 5.7385 -1.0520 0.0566 40 1 5.1578 -1.3084 -2.9905 41 1 5.9073 -2.8148 -5.4177 42 1 6.1218 -2.6239 -7.8430 43 1 5.5873 -0.5114 -8.9812 44 1 4.8286 1.4393 -7.6986 45 1 2.3888 4.3729 -7.1142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610492271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 25.314291 kcal Electronic energy + Delta-G solvation = -30517.004172 eV Core-core repulsion = 26501.189538 eV Total energy + Delta-G solvation = -4015.814634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66246 -40.70602 -38.71839 -38.18302 -37.71292 -36.71141 -35.37933 -33.52707 -32.66487 -30.98236 -30.87423 -29.51087 -27.23105 -26.74533 -25.65972 -24.76134 -23.39640 -22.58966 -21.80915 -20.54588 -19.72529 -18.70626 -17.97602 -17.80543 -17.49979 -17.17280 -16.96385 -16.68037 -16.47166 -16.11391 -15.86511 -15.67359 -15.42871 -15.11308 -14.86118 -14.84501 -14.63665 -14.33163 -13.96018 -13.92663 -13.71242 -13.29876 -13.22275 -13.15647 -12.82382 -12.79876 -12.70391 -12.64615 -12.41038 -12.32830 -12.10045 -12.02074 -11.75580 -11.56688 -11.23917 -10.89397 -10.59083 -10.36866 -9.77310 -9.02375 -8.79569 -8.59936 -6.56463 -0.02042 0.88736 1.06382 1.14382 1.26035 1.34294 1.61145 1.85964 1.89822 1.98430 2.35433 2.68501 2.71905 2.87861 3.11597 3.15124 3.68091 3.97521 4.00420 4.04595 4.20760 4.24994 4.26891 4.33678 4.40915 4.50401 4.53236 4.55774 4.62046 4.62942 4.70348 4.76609 4.80893 4.87026 4.94655 4.98296 5.03332 5.12838 5.24793 5.42060 5.59944 5.65607 5.77628 5.85570 5.98549 6.07546 6.19685 6.33834 6.41273 6.63659 6.81385 7.15999 7.26607 8.31068 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.005483 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.632480 B = 5105.243812 C = 6971.324797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.586 5.586 6 C 0.091 3.909 7 C -0.050 4.050 8 C 0.237 3.763 9 N -0.477 5.477 10 C 0.583 3.417 11 O -0.565 6.565 12 C -0.027 4.027 13 C -0.191 4.191 14 C -0.140 4.140 15 C -0.072 4.072 16 C -0.152 4.152 17 C -0.109 4.109 18 C -0.155 4.155 19 C 0.038 3.962 20 N -0.291 5.291 21 C -0.346 4.346 22 H 0.084 0.916 23 C 0.040 3.960 24 N -0.881 5.881 25 Si 0.930 3.070 26 H -0.225 1.225 27 H -0.271 1.271 28 H -0.283 1.283 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.191 0.809 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -12.177 11.331 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.034 4.034 4 C -0.003 4.003 5 N -0.318 5.318 6 C -0.033 4.033 7 C -0.090 4.090 8 C -0.080 4.080 9 N -0.155 5.155 10 C 0.373 3.627 11 O -0.443 6.443 12 C -0.142 4.142 13 C -0.217 4.217 14 C -0.145 4.145 15 C -0.091 4.091 16 C -0.171 4.171 17 C -0.129 4.129 18 C -0.175 4.175 19 C -0.074 4.074 20 N 0.044 4.956 21 C -0.474 4.474 22 H 0.102 0.898 23 C -0.167 4.167 24 N -0.514 5.514 25 Si 0.753 3.247 26 H -0.149 1.149 27 H -0.195 1.195 28 H -0.210 1.210 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.174 0.826 40 H 0.207 0.793 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.119 0.881 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.233 -12.773 11.030 16.878 hybrid contribution -0.973 1.415 -0.732 1.867 sum -1.207 -11.358 10.299 15.379 Atomic orbital electron populations 1.22858 0.80284 1.03660 1.00081 1.87790 1.20662 1.27737 1.95482 1.23026 0.94930 0.85025 1.00431 1.21807 0.91582 1.01273 0.85604 1.47390 1.66317 1.06906 1.11142 1.22241 0.95820 0.79218 1.06019 1.20014 0.99257 0.81478 1.08285 1.29050 0.92227 0.94836 0.91906 1.81269 1.09639 1.14193 1.10352 1.17313 0.76446 0.85693 0.83272 1.90794 1.53452 1.15455 1.84638 1.20331 1.13031 0.93562 0.87277 1.21773 1.09850 0.94340 0.95722 1.18482 1.07763 0.94012 0.94241 1.20604 0.97823 0.96680 0.93960 1.20880 1.03674 0.98133 0.94413 1.21074 0.99357 0.92208 1.00224 1.20388 1.05765 1.00354 0.91004 1.18933 1.04763 0.91907 0.91795 1.40173 1.43392 1.08208 1.03829 1.19110 1.27320 0.81721 1.19214 0.89846 1.26094 0.95337 0.98749 0.96535 1.69688 1.33394 1.19423 1.28920 0.86138 0.78031 0.79017 0.81470 1.14898 1.19534 1.21001 0.92441 0.95662 0.88191 0.89676 0.96467 0.84715 0.88741 0.86171 0.88818 0.86557 0.82597 0.79264 0.83860 0.82735 0.83763 0.88081 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -8.69 9.56 -148.98 -1.42 -10.11 16 3 C 0.04 0.98 6.28 71.98 0.45 1.43 16 4 C 0.12 2.44 5.84 86.38 0.50 2.95 16 5 N -0.59 -15.73 2.44 -826.30 -2.01 -17.75 16 6 C 0.09 1.83 4.68 86.38 0.40 2.24 16 7 C -0.05 -0.72 5.07 28.79 0.15 -0.58 16 8 C 0.24 4.57 14.59 89.44 1.30 5.88 16 9 N -0.48 -12.06 18.54 20.01 0.37 -11.69 16 10 C 0.58 23.47 7.55 86.51 0.65 24.12 16 11 O -0.56 -27.77 14.84 -4.22 -0.06 -27.83 16 12 C -0.03 -1.20 6.55 39.91 0.26 -0.93 16 13 C -0.19 -6.91 7.77 22.63 0.18 -6.74 16 14 C -0.14 -5.60 6.16 -21.33 -0.13 -5.73 16 15 C -0.07 -2.33 10.06 22.32 0.22 -2.10 16 16 C -0.15 -4.55 9.97 22.03 0.22 -4.33 16 17 C -0.11 -3.75 10.02 22.32 0.22 -3.53 16 18 C -0.16 -6.82 6.65 22.38 0.15 -6.67 16 19 C 0.04 1.82 4.85 39.06 0.19 2.01 16 20 N -0.29 -15.16 2.42 -331.35 -0.80 -15.96 16 21 C -0.35 -20.50 9.32 84.09 0.78 -19.72 16 22 H 0.08 5.58 7.25 -2.92 -0.02 5.56 16 23 C 0.04 2.32 5.25 84.95 0.45 2.76 16 24 N -0.88 -52.08 13.95 21.67 0.30 -51.78 16 25 Si 0.93 45.17 23.63 68.60 1.62 46.79 16 26 H -0.23 -9.93 5.65 99.48 0.56 -9.37 16 27 H -0.27 -13.74 6.74 99.48 0.67 -13.07 16 28 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 1.51 8.07 -2.39 -0.02 1.49 16 35 H 0.09 2.17 7.36 -2.39 -0.02 2.16 16 36 H 0.12 1.94 7.16 -2.38 -0.02 1.92 16 37 H 0.09 2.37 4.53 -2.38 -0.01 2.36 16 38 H 0.12 1.96 6.87 -2.39 -0.02 1.94 16 39 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.19 5.15 2.56 -2.92 -0.01 5.14 16 41 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 44 H 0.10 4.75 5.57 -2.91 -0.02 4.74 16 45 H 0.29 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -79.96 367.18 6.10 -73.86 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.86 Total: 21.67 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 7.25 Total: -7.20 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.14 Total: -97.18 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.49 Total: -37.94 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.62 Total: 46.79 kcal Total: -79.96 6.10 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610492271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.175 kcal (2) G-P(sol) polarization free energy of solvation -79.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds