Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99526 * 2 1 4 4 O 1.20825 * 120.00560 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99799 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.36744 * 57.64166 * 5 3 2 7 7 C 1.54385 * 110.40669 * 295.16854 * 5 3 2 8 8 C 1.54258 * 105.05599 * 217.36926 * 7 5 3 9 9 H 1.09005 * 110.32449 * 240.99866 * 8 7 5 10 10 F 1.39901 * 110.32230 * 118.89816 * 8 7 5 11 11 C 1.54378 * 105.06502 * 0.02562 * 8 7 5 12 12 N 1.48554 * 104.59426 * 23.85028 * 11 8 7 13 13 C 1.46901 * 111.00208 * 200.96461 * 12 11 8 14 14 C 1.50701 * 109.46921 * 285.41849 * 13 12 11 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47411 * 89.99586 * 22 20 18 24 24 H 1.48497 * 109.47183 * 209.99666 * 22 20 18 25 25 H 1.48503 * 109.46948 * 330.00085 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 7.37096 * 95.93327 * 299.56036 * 2 1 3 30 30 H 1.08996 * 109.47216 * 60.00387 * 1 2 3 31 31 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47242 * 300.00409 * 1 2 3 33 33 H 1.09002 * 110.32651 * 336.26293 * 7 5 3 34 34 H 1.08996 * 110.32519 * 98.37385 * 7 5 3 35 35 H 1.09002 * 110.40560 * 265.07483 * 11 8 7 36 36 H 1.08997 * 110.41571 * 142.63342 * 11 8 7 37 37 H 1.09002 * 109.47401 * 165.41877 * 13 12 11 38 38 H 1.09001 * 109.46874 * 45.41889 * 13 12 11 39 39 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 40 40 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 41 41 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 43 43 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 44 44 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 45 45 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9734 0.7489 -0.8640 7 6 4.1366 0.6884 1.3087 8 6 5.3407 1.5868 1.6592 9 1 6.2589 0.9995 1.6764 10 9 5.1392 2.2084 2.8962 11 6 5.3961 2.6409 0.5327 12 7 4.0103 2.6929 0.0001 13 6 3.9890 3.2516 -1.3583 14 6 4.2045 4.7417 -1.2920 15 8 4.3610 5.2846 -0.2189 16 7 4.2244 5.4707 -2.4255 17 6 4.4345 6.9191 -2.3610 18 6 5.9096 7.2169 -2.4424 19 1 6.6195 6.4080 -2.5326 20 6 6.3528 8.5218 -2.4017 21 7 5.4882 9.5068 -2.2923 22 14 8.1811 8.8909 -2.5033 23 1 8.5730 9.0636 -3.9252 24 1 8.4768 10.1380 -1.7534 25 1 8.9470 7.7643 -1.9121 26 6 4.0359 4.8148 -3.7217 27 6 2.5458 4.7883 -4.0680 28 6 2.3565 4.1298 -5.3709 29 7 2.2140 3.6169 -6.3772 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.3887 0.7318 2.1004 34 1 4.4624 -0.3399 1.1524 35 1 6.0913 2.3282 -0.2465 36 1 5.6857 3.6118 0.9345 37 1 3.0242 3.0443 -1.8214 38 1 4.7820 2.7958 -1.9511 39 1 3.9207 7.3982 -3.1945 40 1 4.0378 7.3025 -1.4209 41 1 5.7999 10.4249 -2.2640 42 1 4.5778 5.3662 -4.4901 43 1 4.4154 3.7943 -3.6711 44 1 2.0039 4.2369 -3.2997 45 1 2.1664 5.8089 -4.1187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619514449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = -119.933958 kcal Electronic energy + Delta-G solvation = -30692.767963 eV Core-core repulsion = 26239.885667 eV Total energy + Delta-G solvation = -4452.882296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.64100 -40.86564 -39.49662 -38.11028 -36.78794 -36.43504 -35.16915 -32.98342 -32.15538 -30.82438 -30.08012 -28.06411 -27.66515 -26.08630 -24.00882 -23.49264 -22.49072 -21.38588 -20.58500 -18.62059 -17.97059 -17.58900 -17.20736 -16.99620 -16.46059 -16.43493 -16.29755 -15.71772 -15.41096 -15.34114 -14.71356 -14.61143 -14.36592 -14.27940 -13.86852 -13.69865 -13.45763 -13.31377 -13.12442 -12.74700 -12.57331 -12.43166 -12.37551 -12.23280 -12.06647 -11.93774 -11.80774 -11.48810 -11.30844 -11.25150 -10.99749 -10.99182 -10.90821 -10.82749 -10.61173 -10.45656 -10.18416 -9.70186 -9.13015 -8.56383 -8.46748 -7.82035 -6.07916 -4.12783 2.02812 2.29578 2.70251 2.78433 3.27889 3.31414 3.35944 3.36461 3.41807 3.83070 3.99582 4.04433 4.25074 4.37984 4.41843 4.54821 4.69425 4.80826 4.86500 4.92557 4.94475 5.00745 5.02436 5.07998 5.19025 5.25270 5.27104 5.29197 5.30184 5.43826 5.52112 5.75400 5.82063 5.94218 6.05461 6.13726 6.47522 6.54326 6.98308 7.39663 7.44942 7.55903 7.61859 7.87949 8.18124 8.27745 8.85781 9.02391 9.52659 11.00183 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.003824 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.452969 B = 7319.952759 C = 9477.399353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.472 6.472 5 C 0.068 3.932 6 H 0.095 0.905 7 C -0.136 4.136 8 C 0.091 3.909 9 H 0.099 0.901 10 F -0.199 7.199 11 C 0.009 3.991 12 N -0.465 5.465 13 C 0.021 3.979 14 C 0.513 3.487 15 O -0.508 6.508 16 N -0.599 5.599 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.119 3.881 27 C -0.052 4.052 28 C 0.217 3.783 29 N -0.447 5.447 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 -21.556 3.158 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.356 6.356 5 C -0.042 4.042 6 H 0.113 0.887 7 C -0.174 4.174 8 C 0.054 3.946 9 H 0.117 0.883 10 F -0.180 7.180 11 C -0.118 4.118 12 N -0.191 5.191 13 C -0.110 4.110 14 C 0.298 3.702 15 O -0.382 6.382 16 N -0.332 5.332 17 C 0.128 3.872 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.008 4.008 27 C -0.094 4.094 28 C -0.101 4.101 29 N -0.124 5.124 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.761 -21.110 2.619 22.038 hybrid contribution 1.201 0.136 -0.364 1.262 sum -4.560 -20.974 2.255 21.582 Atomic orbital electron populations 1.23262 0.76134 1.03583 1.02770 1.86473 1.23508 1.33430 1.84594 1.23276 0.91223 0.81598 0.73502 1.90736 1.66278 1.36021 1.42555 1.22222 0.88868 0.92481 1.00637 0.88715 1.22907 0.98344 0.99751 0.96407 1.22244 0.98599 0.93032 0.80698 0.88305 1.92878 1.96417 1.84442 1.44268 1.23932 0.88961 1.02238 0.96659 1.64829 1.20602 1.12504 1.21120 1.22391 1.02954 0.95834 0.89803 1.19897 0.78066 0.87593 0.84634 1.90707 1.47357 1.72118 1.27992 1.48195 1.70501 1.10891 1.03643 1.19339 0.96777 0.72237 0.98871 1.21398 0.92158 0.92195 1.50957 0.92459 1.24915 0.97905 0.96123 0.95030 1.69921 1.33880 0.99466 1.49851 0.86525 0.85220 0.77917 0.77906 1.20710 1.21108 1.19925 1.21285 0.92269 0.98797 0.88434 1.19941 1.00800 1.02019 0.86640 1.29238 0.93011 0.93143 0.94674 1.81303 1.08893 1.10320 1.11912 0.91841 0.88130 0.91769 0.88820 0.88236 0.91647 0.86207 0.88230 0.91562 0.94767 0.93469 0.92664 0.88657 0.91043 0.87574 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.50 10.57 -39.26 -0.41 -3.91 16 3 C 0.46 5.47 6.89 36.01 0.25 5.72 16 4 O -0.47 -7.31 15.65 -18.75 -0.29 -7.60 16 5 C 0.07 0.68 2.78 -67.20 -0.19 0.50 16 6 H 0.10 0.68 8.00 -51.93 -0.42 0.26 16 7 C -0.14 -1.14 6.39 -25.35 -0.16 -1.30 16 8 C 0.09 0.90 4.85 -25.35 -0.12 0.78 16 9 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 10 F -0.20 -2.72 17.10 2.25 0.04 -2.68 16 11 C 0.01 0.12 5.72 -2.19 -0.01 0.10 16 12 N -0.47 -6.38 4.24 -224.91 -0.95 -7.34 16 13 C 0.02 0.29 3.68 -4.97 -0.02 0.27 16 14 C 0.51 9.61 7.52 -10.98 -0.08 9.52 16 15 O -0.51 -12.01 14.80 5.56 0.08 -11.93 16 16 N -0.60 -11.00 2.46 -175.06 -0.43 -11.43 16 17 C 0.25 5.86 5.16 -5.19 -0.03 5.84 16 18 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 19 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.12 1.57 5.17 -4.05 -0.02 1.55 16 27 C -0.05 -0.58 6.03 -29.51 -0.18 -0.75 16 28 C 0.22 2.67 15.44 -20.68 -0.32 2.35 16 29 N -0.45 -6.58 18.55 42.25 0.78 -5.80 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 33 H 0.09 0.89 7.75 -51.93 -0.40 0.49 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.65 7.75 -51.93 -0.40 0.24 16 36 H 0.12 1.93 7.21 -51.93 -0.37 1.55 16 37 H 0.10 1.21 6.44 -51.93 -0.33 0.88 16 38 H 0.07 0.71 7.03 -51.93 -0.36 0.34 16 39 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.10 1.33 8.07 -51.93 -0.42 0.92 16 43 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 44 H 0.11 1.04 7.22 -51.93 -0.38 0.67 16 45 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -36.24 388.89 -6.15 -42.39 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.31 Total: -2.05 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -0.24 Total: 13.22 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.14 Total: -49.38 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.63 Total: -23.44 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.24 -6.15 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619514449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.543 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds