Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35917 * 116.99948 * 2 1 4 4 C 1.39145 * 120.46991 * 0.24974 * 3 2 1 5 5 C 1.38540 * 118.36938 * 180.26923 * 4 3 2 6 6 C 1.38256 * 119.22179 * 359.74599 * 5 4 3 7 7 N 1.31839 * 120.88701 * 359.97438 * 6 5 4 8 8 C 1.31848 * 121.78107 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.65537 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47568 * 89.99786 * 9 8 7 11 11 O 1.21289 * 119.99762 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00038 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00377 * 0.02562 * 12 10 9 14 14 C 1.50704 * 109.47158 * 270.00187 * 13 12 10 15 15 H 1.08004 * 120.00008 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00307 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00235 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46928 * 89.99864 * 18 16 14 20 20 H 1.48494 * 109.47365 * 210.00360 * 18 16 14 21 21 H 1.48503 * 109.46819 * 330.00533 * 18 16 14 22 22 C 1.46506 * 119.99868 * 180.02562 * 12 10 9 23 23 C 1.50703 * 109.47289 * 89.99907 * 22 12 10 24 24 C 1.38668 * 120.41699 * 269.72232 * 23 22 12 25 25 C 1.38633 * 118.42041 * 179.78557 * 24 23 22 26 26 C 1.38224 * 119.15591 * 0.51099 * 25 24 23 27 27 N 1.31860 * 120.76804 * 359.72581 * 26 25 24 28 28 C 1.31892 * 121.72207 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.46678 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47208 * 300.00364 * 1 2 3 31 31 H 1.09009 * 109.46820 * 60.00068 * 1 2 3 32 32 H 1.07995 * 120.81874 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.38707 * 179.72978 * 5 4 3 34 34 H 1.07996 * 119.55334 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47198 * 329.99096 * 9 8 7 36 36 H 1.09003 * 109.46308 * 210.00028 * 9 8 7 37 37 H 1.08997 * 109.46694 * 29.99578 * 13 12 10 38 38 H 1.08995 * 109.47258 * 149.99854 * 13 12 10 39 39 H 0.96996 * 120.00505 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47060 * 210.00357 * 22 12 10 41 41 H 1.09004 * 109.47073 * 329.99846 * 22 12 10 42 42 H 1.08000 * 120.79413 * 0.02562 * 24 23 22 43 43 H 1.07992 * 120.42251 * 180.21754 * 25 24 23 44 44 H 1.07998 * 119.61684 * 179.75282 * 26 25 24 45 45 H 1.07992 * 119.61024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3842 0.0052 5 6 1.9716 3.5947 -0.0007 6 6 3.3541 3.5977 -0.0062 7 7 4.0334 2.4677 -0.0054 8 6 3.4305 1.2951 0.0002 9 6 4.2543 0.0332 0.0004 10 6 4.5346 -0.3837 1.4211 11 8 4.1079 0.2791 2.3430 12 7 5.2595 -1.4929 1.6674 13 6 5.7754 -2.2931 0.5540 14 6 4.7622 -3.3437 0.1787 15 1 3.8277 -3.4091 0.7161 16 6 5.0284 -4.2214 -0.8507 17 7 6.1661 -4.1415 -1.5054 18 14 3.7728 -5.5242 -1.3155 19 1 2.8545 -4.9805 -2.3480 20 1 4.4737 -6.7170 -1.8551 21 1 2.9922 -5.9107 -0.1128 22 6 5.5315 -1.8984 3.0487 23 6 4.4348 -2.8137 3.5289 24 6 3.3121 -2.2952 4.1563 25 6 2.3264 -3.1744 4.5773 26 6 2.4993 -4.5299 4.3689 27 7 3.5827 -4.9879 3.7729 28 6 4.5382 -4.1805 3.3550 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.2184 2.3519 0.0098 33 1 1.4232 4.5251 -0.0013 34 1 3.8848 4.5382 -0.0105 35 1 5.1960 0.2139 -0.5179 36 1 3.7055 -0.7589 -0.5092 37 1 5.9618 -1.6457 -0.3028 38 1 6.7054 -2.7759 0.8539 39 1 6.3532 -4.7588 -2.2299 40 1 6.4867 -2.4217 3.0923 41 1 5.5721 -1.0147 3.6856 42 1 3.2062 -1.2314 4.3097 43 1 1.4370 -2.8055 5.0663 44 1 1.7380 -5.2218 4.6975 45 1 5.4114 -4.5926 2.8714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619582218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 2.932859 kcal Electronic energy + Delta-G solvation = -30289.387882 eV Core-core repulsion = 26272.602716 eV Total energy + Delta-G solvation = -4016.785166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65284 -39.80397 -38.67415 -37.94686 -35.17173 -33.18761 -32.66182 -31.94893 -31.33232 -30.98446 -28.26493 -27.47586 -27.31650 -25.51875 -23.14679 -22.88463 -22.75301 -22.40107 -21.41151 -18.53007 -17.91052 -17.03604 -16.75708 -16.58044 -16.41953 -16.05547 -15.74532 -15.46071 -15.23039 -14.91246 -14.37379 -14.31383 -13.97716 -13.78395 -13.46753 -13.25135 -13.05634 -12.81488 -12.54022 -12.49522 -12.22283 -12.17454 -11.69944 -11.61113 -11.39715 -11.32673 -11.26347 -11.13033 -10.84288 -10.68228 -10.16212 -9.73798 -9.66129 -9.39679 -9.37176 -9.07828 -8.99123 -8.57822 -8.44169 -8.13479 -7.74385 -6.14747 -4.20641 1.24141 1.41018 1.57517 1.78796 3.26890 3.29916 3.34350 3.38819 3.45963 3.75904 4.07419 4.36818 4.42354 4.58469 4.73444 4.77567 4.92266 5.03006 5.12124 5.18247 5.18678 5.21008 5.34958 5.38820 5.41315 5.47313 5.50497 5.60241 5.68380 5.82941 5.87539 6.08245 6.10055 6.13934 6.26484 6.30822 6.34235 6.56827 6.60564 6.72927 6.82030 7.17378 7.20540 7.33276 7.51885 7.80664 8.08110 8.18329 8.29742 8.47415 8.83477 9.01752 9.47598 10.91982 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.004735 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.557410 B = 5911.535818 C = 6835.447468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.093 3.907 4 C -0.169 4.169 5 C -0.143 4.143 6 C 0.059 3.941 7 N -0.441 5.441 8 C 0.140 3.860 9 C -0.083 4.083 10 C 0.534 3.466 11 O -0.570 6.570 12 N -0.592 5.592 13 C 0.235 3.765 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.165 3.835 23 C -0.140 4.140 24 C -0.057 4.057 25 C -0.188 4.188 26 C 0.089 3.911 27 N -0.491 5.491 28 C 0.139 3.861 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 9.785 4.979 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.208 6.208 3 C 0.045 3.955 4 C -0.196 4.196 5 C -0.163 4.163 6 C -0.098 4.098 7 N -0.150 5.150 8 C 0.000 4.000 9 C -0.123 4.123 10 C 0.322 3.678 11 O -0.450 6.450 12 N -0.322 5.322 13 C 0.115 3.885 14 C -0.567 4.567 15 H 0.079 0.921 16 C -0.134 4.134 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.195 1.195 22 C 0.041 3.959 23 C -0.143 4.143 24 C -0.084 4.084 25 C -0.208 4.208 26 C -0.068 4.068 27 N -0.200 5.200 28 C -0.018 4.018 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.163 0.837 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.645 8.951 5.156 12.852 hybrid contribution -2.177 0.208 -0.418 2.227 sum -9.823 9.159 4.738 14.242 Atomic orbital electron populations 1.23077 0.78707 1.04243 1.00819 1.86239 1.21010 1.25611 1.87954 1.19895 0.93241 0.85156 0.97207 1.21604 1.00430 0.92218 1.05317 1.21877 0.95771 0.97909 1.00708 1.22540 0.91352 0.96324 0.99590 1.67494 1.40013 0.97497 1.09969 1.20243 0.87946 0.93591 0.98231 1.20473 1.01481 0.93725 0.96591 1.20059 0.77348 0.80085 0.90261 1.90572 1.52909 1.55083 1.46473 1.48210 1.52172 1.24898 1.06943 1.19535 0.95021 0.90465 0.83461 1.21425 1.03404 1.14996 1.16910 0.92144 1.24864 0.95304 0.97347 0.95870 1.69910 1.22861 1.37846 1.22326 0.86626 0.81598 0.81274 0.78945 1.20696 1.21135 1.19511 1.20099 0.95081 0.96718 0.83994 1.21246 0.98023 0.96037 0.98996 1.21552 0.92409 1.00270 0.94126 1.21991 1.00233 0.94906 1.03632 1.22616 0.95185 0.93582 0.95445 1.67698 1.01847 1.40329 1.10115 1.22716 0.96891 0.89497 0.92739 0.88011 0.92846 0.92835 0.84681 0.84959 0.82820 0.87355 0.85864 0.94145 0.94453 0.92595 0.89796 0.90099 0.84997 0.85777 0.83747 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.83 101.05 0.99 1.30 16 2 O -0.30 -4.96 9.54 -19.48 -0.19 -5.15 16 3 C 0.09 1.55 6.67 -39.08 -0.26 1.29 16 4 C -0.17 -2.23 9.14 -39.13 -0.36 -2.59 16 5 C -0.14 -1.70 10.11 -39.46 -0.40 -2.10 16 6 C 0.06 0.80 11.18 -17.54 -0.20 0.61 16 7 N -0.44 -7.68 10.27 -9.36 -0.10 -7.77 16 8 C 0.14 2.58 5.29 -82.41 -0.44 2.14 16 9 C -0.08 -1.62 4.33 -29.04 -0.13 -1.74 16 10 C 0.53 11.17 7.66 -10.99 -0.08 11.08 16 11 O -0.57 -12.65 15.27 5.55 0.08 -12.57 16 12 N -0.59 -12.10 2.44 -176.43 -0.43 -12.53 16 13 C 0.23 5.33 5.01 -5.19 -0.03 5.30 16 14 C -0.53 -13.24 8.73 -34.44 -0.30 -13.54 16 15 H 0.06 1.61 7.58 -52.48 -0.40 1.21 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.17 2.96 5.60 -5.19 -0.03 2.93 16 23 C -0.14 -2.55 5.48 -104.49 -0.57 -3.13 16 24 C -0.06 -0.98 9.86 -39.28 -0.39 -1.37 16 25 C -0.19 -2.89 10.11 -39.44 -0.40 -3.29 16 26 C 0.09 1.44 11.18 -17.54 -0.20 1.24 16 27 N -0.49 -9.38 10.36 -13.26 -0.14 -9.52 16 28 C 0.14 2.65 10.08 -17.55 -0.18 2.47 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.54 7.69 -51.93 -0.40 0.14 16 31 H 0.05 0.50 7.71 -51.92 -0.40 0.10 16 32 H 0.14 1.36 6.45 -52.49 -0.34 1.02 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 2.05 7.40 -51.93 -0.38 1.66 16 36 H 0.12 2.56 7.37 -51.93 -0.38 2.17 16 37 H 0.04 0.95 6.44 -51.93 -0.33 0.62 16 38 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 41 H 0.08 1.41 7.37 -51.93 -0.38 1.02 16 42 H 0.13 2.28 7.71 -52.49 -0.40 1.88 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 45 H 0.16 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -31.87 385.95 -8.20 -40.07 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.91 Total: 6.74 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.05 Total: 2.31 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.07 Total: -53.16 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.10 Total: -17.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.87 -8.20 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619582218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.999 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds