Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35917 * 116.99948 * 2 1 4 4 C 1.39145 * 120.46991 * 0.24974 * 3 2 1 5 5 C 1.38540 * 118.36938 * 180.26923 * 4 3 2 6 6 C 1.38256 * 119.22179 * 359.74599 * 5 4 3 7 7 N 1.31839 * 120.88701 * 359.97438 * 6 5 4 8 8 C 1.31848 * 121.78107 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.65537 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47568 * 89.99786 * 9 8 7 11 11 O 1.21289 * 119.99762 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00038 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00377 * 0.02562 * 12 10 9 14 14 C 1.50704 * 109.47158 * 270.00187 * 13 12 10 15 15 H 1.08004 * 120.00008 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00307 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00235 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46928 * 89.99864 * 18 16 14 20 20 H 1.48494 * 109.47365 * 210.00360 * 18 16 14 21 21 H 1.48503 * 109.46819 * 330.00533 * 18 16 14 22 22 C 1.46506 * 119.99868 * 180.02562 * 12 10 9 23 23 C 1.50703 * 109.47289 * 89.99907 * 22 12 10 24 24 C 1.38668 * 120.41699 * 269.72232 * 23 22 12 25 25 C 1.38633 * 118.42041 * 179.78557 * 24 23 22 26 26 C 1.38224 * 119.15591 * 0.51099 * 25 24 23 27 27 N 1.31860 * 120.76804 * 359.72581 * 26 25 24 28 28 C 1.31892 * 121.72207 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.46678 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47208 * 300.00364 * 1 2 3 31 31 H 1.09009 * 109.46820 * 60.00068 * 1 2 3 32 32 H 1.07995 * 120.81874 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.38707 * 179.72978 * 5 4 3 34 34 H 1.07996 * 119.55334 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47198 * 329.99096 * 9 8 7 36 36 H 1.09003 * 109.46308 * 210.00028 * 9 8 7 37 37 H 1.08997 * 109.46694 * 29.99578 * 13 12 10 38 38 H 1.08995 * 109.47258 * 149.99854 * 13 12 10 39 39 H 0.96996 * 120.00505 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47060 * 210.00357 * 22 12 10 41 41 H 1.09004 * 109.47073 * 329.99846 * 22 12 10 42 42 H 1.08000 * 120.79413 * 0.02562 * 24 23 22 43 43 H 1.07992 * 120.42251 * 180.21754 * 25 24 23 44 44 H 1.07998 * 119.61684 * 179.75282 * 26 25 24 45 45 H 1.07992 * 119.61024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3842 0.0052 5 6 1.9716 3.5947 -0.0007 6 6 3.3541 3.5977 -0.0062 7 7 4.0334 2.4677 -0.0054 8 6 3.4305 1.2951 0.0002 9 6 4.2543 0.0332 0.0004 10 6 4.5346 -0.3837 1.4211 11 8 4.1079 0.2791 2.3430 12 7 5.2595 -1.4929 1.6674 13 6 5.7754 -2.2931 0.5540 14 6 4.7622 -3.3437 0.1787 15 1 3.8277 -3.4091 0.7161 16 6 5.0284 -4.2214 -0.8507 17 7 6.1661 -4.1415 -1.5054 18 14 3.7728 -5.5242 -1.3155 19 1 2.8545 -4.9805 -2.3480 20 1 4.4737 -6.7170 -1.8551 21 1 2.9922 -5.9107 -0.1128 22 6 5.5315 -1.8984 3.0487 23 6 4.4348 -2.8137 3.5289 24 6 3.3121 -2.2952 4.1563 25 6 2.3264 -3.1744 4.5773 26 6 2.4993 -4.5299 4.3689 27 7 3.5827 -4.9879 3.7729 28 6 4.5382 -4.1805 3.3550 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.2184 2.3519 0.0098 33 1 1.4232 4.5251 -0.0013 34 1 3.8848 4.5382 -0.0105 35 1 5.1960 0.2139 -0.5179 36 1 3.7055 -0.7589 -0.5092 37 1 5.9618 -1.6457 -0.3028 38 1 6.7054 -2.7759 0.8539 39 1 6.3532 -4.7588 -2.2299 40 1 6.4867 -2.4217 3.0923 41 1 5.5721 -1.0147 3.6856 42 1 3.2062 -1.2314 4.3097 43 1 1.4370 -2.8055 5.0663 44 1 1.7380 -5.2218 4.6975 45 1 5.4114 -4.5926 2.8714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619582218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -16.364837 kcal Electronic energy + Delta-G solvation = -30290.224693 eV Core-core repulsion = 26272.602716 eV Total energy + Delta-G solvation = -4017.621977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83881 -41.19600 -40.20345 -39.05674 -36.85815 -34.84111 -34.14082 -33.42832 -32.59962 -32.24315 -29.59487 -29.24941 -28.31385 -26.98896 -24.91818 -24.35334 -23.80802 -23.71075 -22.73928 -20.09206 -19.00814 -18.68785 -18.14037 -18.09758 -17.88748 -17.40485 -17.01712 -16.70153 -16.61934 -16.52839 -16.09037 -15.54369 -15.23938 -14.87722 -14.75281 -14.54807 -14.41201 -14.23691 -14.10263 -13.88247 -13.88099 -13.46249 -13.27695 -13.13143 -12.97079 -12.79709 -12.65017 -12.41100 -12.34748 -12.28772 -12.03504 -11.67893 -10.96970 -10.71049 -10.61577 -10.50976 -10.49015 -10.39729 -9.87312 -9.45546 -9.28753 -8.17282 -6.27034 0.12909 0.23762 0.34428 0.41506 1.36579 1.40497 1.49564 1.77260 2.27458 2.31404 2.43861 2.84560 3.03634 3.14876 3.37519 3.62270 3.68030 3.80004 3.84852 3.98174 4.03649 4.10182 4.13697 4.20013 4.29639 4.33262 4.34613 4.48855 4.51203 4.55826 4.65544 4.67658 4.76381 4.85651 4.93645 4.96208 5.08808 5.13762 5.22702 5.25499 5.43419 5.56149 5.69930 5.83211 5.85536 6.09905 6.29904 6.54731 6.84793 7.06447 7.10500 7.31070 7.44906 8.88748 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.004735 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.557410 B = 5911.535818 C = 6835.447468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.075 3.925 4 C -0.165 4.165 5 C -0.125 4.125 6 C 0.048 3.952 7 N -0.472 5.472 8 C 0.100 3.900 9 C -0.074 4.074 10 C 0.532 3.468 11 O -0.582 6.582 12 N -0.593 5.593 13 C 0.250 3.750 14 C -0.518 4.518 15 H 0.044 0.956 16 C 0.030 3.970 17 N -0.917 5.917 18 Si 0.938 3.062 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.163 3.837 23 C -0.149 4.149 24 C -0.066 4.066 25 C -0.175 4.175 26 C 0.085 3.915 27 N -0.517 5.517 28 C 0.122 3.878 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.186 0.814 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.162 0.838 44 H 0.181 0.819 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 11.335 5.649 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.027 3.973 4 C -0.191 4.191 5 C -0.144 4.144 6 C -0.109 4.109 7 N -0.182 5.182 8 C -0.039 4.039 9 C -0.114 4.114 10 C 0.321 3.679 11 O -0.464 6.464 12 N -0.323 5.323 13 C 0.129 3.871 14 C -0.557 4.557 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.556 5.556 18 Si 0.765 3.235 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.039 3.961 23 C -0.152 4.152 24 C -0.093 4.093 25 C -0.194 4.194 26 C -0.072 4.072 27 N -0.226 5.226 28 C -0.035 4.035 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.187 0.813 33 H 0.198 0.802 34 H 0.203 0.797 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.180 0.820 44 H 0.198 0.802 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.408 10.487 5.832 15.885 hybrid contribution -1.425 -0.165 -0.557 1.539 sum -11.833 10.322 5.275 16.565 Atomic orbital electron populations 1.23366 0.76359 1.05303 1.02639 1.86182 1.23654 1.26421 1.88250 1.20025 0.92959 0.86325 0.97951 1.22052 1.02068 0.91290 1.03691 1.22402 0.95189 0.99328 0.97502 1.23210 0.92806 0.96226 0.98671 1.67394 1.41476 0.98245 1.11056 1.20021 0.88893 0.93217 1.01731 1.20266 1.01234 0.94598 0.95293 1.20318 0.76936 0.79846 0.90785 1.90534 1.53434 1.55427 1.46974 1.48174 1.52038 1.24621 1.07422 1.19190 0.94146 0.89843 0.83872 1.21422 1.02888 1.15152 1.16256 0.93789 1.25400 0.96579 0.98918 0.96102 1.69977 1.24009 1.38721 1.22941 0.85850 0.79861 0.79591 0.78202 1.20206 1.20631 1.20485 1.20245 0.95948 0.97163 0.82699 1.21207 0.98599 0.95674 0.99737 1.21676 0.92682 1.00573 0.94355 1.22364 1.00624 0.94284 1.02177 1.23239 0.94852 0.94790 0.94304 1.67676 1.02829 1.40989 1.11100 1.22579 0.97143 0.89916 0.93847 0.87520 0.91294 0.90572 0.81269 0.80249 0.79740 0.88054 0.87980 0.95251 0.95217 0.92491 0.88542 0.89541 0.85170 0.82014 0.80237 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.83 113.37 1.11 1.49 16 2 O -0.33 -11.12 9.54 -92.61 -0.88 -12.00 16 3 C 0.08 2.47 6.67 22.60 0.15 2.62 16 4 C -0.16 -3.85 9.14 22.56 0.21 -3.64 16 5 C -0.13 -2.50 10.11 22.35 0.23 -2.27 16 6 C 0.05 1.22 11.18 84.70 0.95 2.16 16 7 N -0.47 -16.44 10.27 -183.51 -1.88 -18.32 16 8 C 0.10 3.75 5.29 42.67 0.23 3.98 16 9 C -0.07 -3.05 4.33 29.10 0.13 -2.93 16 10 C 0.53 23.11 7.66 87.66 0.67 23.78 16 11 O -0.58 -26.40 15.27 -3.06 -0.05 -26.44 16 12 N -0.59 -25.19 2.44 -830.48 -2.03 -27.22 16 13 C 0.25 11.86 5.01 85.63 0.43 12.29 16 14 C -0.52 -26.81 8.73 25.60 0.22 -26.59 16 15 H 0.04 2.41 7.58 -2.91 -0.02 2.39 16 16 C 0.03 1.61 5.46 84.65 0.46 2.07 16 17 N -0.92 -50.57 13.29 21.44 0.28 -50.28 16 18 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 C 0.16 6.01 5.60 85.63 0.48 6.49 16 23 C -0.15 -5.53 5.48 -19.78 -0.11 -5.64 16 24 C -0.07 -2.25 9.86 22.47 0.22 -2.02 16 25 C -0.18 -5.01 10.11 22.36 0.23 -4.78 16 26 C 0.09 2.60 11.18 84.69 0.95 3.54 16 27 N -0.52 -19.57 10.36 -195.85 -2.03 -21.60 16 28 C 0.12 4.75 10.08 84.67 0.85 5.61 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 1.21 7.69 -2.39 -0.02 1.19 16 31 H 0.08 1.22 7.71 -2.38 -0.02 1.20 16 32 H 0.17 2.66 6.45 -2.91 -0.02 2.64 16 33 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.10 4.15 7.40 -2.39 -0.02 4.13 16 36 H 0.10 4.56 7.37 -2.39 -0.02 4.54 16 37 H 0.03 1.46 6.44 -2.39 -0.02 1.45 16 38 H 0.03 1.45 7.89 -2.39 -0.02 1.44 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.10 3.24 7.85 -2.39 -0.02 3.22 16 41 H 0.09 3.07 7.37 -2.38 -0.02 3.05 16 42 H 0.13 4.44 7.71 -2.91 -0.02 4.42 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -71.19 385.95 3.85 -67.34 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.01 Total: 26.69 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 7.40 Total: 16.15 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.66 Total: -117.42 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.93 Total: -38.45 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.19 3.85 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619582218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.977 kcal (2) G-P(sol) polarization free energy of solvation -71.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds