Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 116.99699 * 2 1 4 4 C 1.38727 * 120.05317 * 359.72981 * 3 2 1 5 5 C 1.38152 * 119.94136 * 179.74209 * 4 3 2 6 6 C 1.38261 * 120.05214 * 0.51100 * 5 4 3 7 7 C 1.50707 * 119.94439 * 179.74357 * 6 5 4 8 8 C 1.50701 * 112.84840 * 294.02907 * 7 6 5 9 9 O 1.21304 * 119.99907 * 123.06317 * 8 7 6 10 10 N 1.34770 * 120.00079 * 303.06260 * 8 7 6 11 11 C 1.40591 * 120.00414 * 185.07454 * 10 8 7 12 12 C 1.40654 * 126.08154 * 0.02662 * 11 10 8 13 13 N 1.30907 * 108.38935 * 179.97438 * 12 11 10 14 14 N 1.40070 * 108.40607 * 0.02562 * 13 12 11 15 15 C 1.37325 * 126.06646 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99569 * 179.97438 * 15 14 13 17 17 C 1.38989 * 119.99953 * 359.96845 * 15 14 13 18 18 N 1.31291 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99721 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47157 * 90.00137 * 19 17 15 21 21 H 1.48495 * 109.47030 * 210.00340 * 19 17 15 22 22 H 1.48505 * 109.46817 * 330.00090 * 19 17 15 23 23 C 1.35684 * 126.08541 * 179.71183 * 11 10 8 24 24 C 1.53773 * 113.61617 * 162.82957 * 7 6 5 25 25 C 1.53960 * 87.01961 * 220.04857 * 24 7 6 26 26 C 1.53778 * 87.10873 * 25.36724 * 25 24 7 27 27 C 1.38260 * 120.11703 * 359.76140 * 6 5 4 28 28 C 1.38146 * 120.05387 * 359.97438 * 27 6 5 29 29 H 1.08994 * 109.47497 * 60.00146 * 1 2 3 30 30 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47360 * 299.99343 * 1 2 3 32 32 H 1.08003 * 120.03178 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.96921 * 180.27285 * 5 4 3 34 34 H 0.97007 * 120.00114 * 5.07707 * 10 8 7 35 35 H 1.08003 * 125.80058 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00048 * 180.02562 * 18 17 15 37 37 H 1.07997 * 126.24523 * 359.97438 * 23 11 10 38 38 H 1.09000 * 113.61543 * 334.57143 * 24 7 6 39 39 H 1.09003 * 113.61612 * 105.47193 * 24 7 6 40 40 H 1.09001 * 113.53341 * 270.81141 * 25 24 7 41 41 H 1.09003 * 113.73865 * 139.95034 * 25 24 7 42 42 H 1.09008 * 113.61004 * 220.09117 * 26 25 24 43 43 H 1.08995 * 113.69381 * 89.19730 * 26 25 24 44 44 H 1.07997 * 119.97760 * 179.97438 * 27 6 5 45 45 H 1.08000 * 120.03281 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3751 -0.0057 5 6 1.9209 3.6049 -0.0003 6 6 3.3017 3.6759 0.0001 7 6 3.9858 5.0187 0.0002 8 6 3.7480 5.7967 -1.2684 9 8 3.2561 6.9044 -1.2173 10 7 4.0817 5.2618 -2.4595 11 6 3.9596 6.0269 -3.6327 12 6 3.5062 7.3560 -3.7115 13 7 3.5320 7.7275 -4.9665 14 7 4.0004 6.6547 -5.7357 15 6 4.1697 6.6502 -7.0985 16 1 4.5396 5.7645 -7.5937 17 6 3.8651 7.7853 -7.8404 18 7 3.4158 8.8621 -7.2383 19 14 4.0948 7.7789 -9.6942 20 1 2.8425 7.3195 -10.3466 21 1 4.4194 9.1519 -10.1574 22 1 5.2054 6.8603 -10.0521 23 6 4.2639 5.6165 -4.8897 24 6 5.4648 4.9565 0.4165 25 6 5.2156 6.2578 1.2007 26 6 3.7389 5.8357 1.2794 27 6 4.0559 2.5172 0.0000 28 6 3.4313 1.2850 0.0002 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 0.2128 2.3201 -0.0105 33 1 1.3339 4.5114 -0.0002 34 1 4.4061 4.3489 -2.5075 35 1 3.1912 7.9665 -2.8781 36 1 3.2028 9.6541 -7.7561 37 1 4.6434 4.6450 -5.1699 38 1 5.7043 4.1033 1.0512 39 1 6.1582 5.0735 -0.4164 40 1 5.3812 7.1596 0.6113 41 1 5.7134 6.2882 2.1699 42 1 3.0409 6.6616 1.1421 43 1 3.5042 5.2234 2.1500 44 1 5.1343 2.5753 -0.0001 45 1 4.0208 0.3801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750733850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 62.069115 kcal Electronic energy + Delta-G solvation = -29119.546728 eV Core-core repulsion = 25105.325903 eV Total energy + Delta-G solvation = -4014.220826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03567 -39.94547 -39.32914 -37.60071 -36.60708 -34.15747 -33.10980 -31.33576 -30.65041 -30.18500 -28.09928 -27.59547 -25.79510 -25.72780 -24.59216 -22.72025 -21.81352 -21.46615 -20.78311 -19.42739 -18.74475 -18.36981 -17.42148 -16.78744 -16.34987 -15.94938 -15.84748 -15.41817 -15.11326 -14.89559 -14.66805 -14.14028 -13.98759 -13.89144 -13.58767 -13.34762 -13.02679 -12.94270 -12.88101 -12.57918 -12.38655 -12.01701 -11.94741 -11.66093 -11.38443 -11.28009 -11.23869 -11.03423 -10.94521 -10.81912 -10.52364 -10.43515 -10.28416 -10.08896 -9.19683 -9.13326 -9.12536 -8.77970 -8.17462 -8.02877 -6.65552 -6.53493 -4.20151 1.20648 1.26562 2.83354 3.03861 3.06093 3.07146 3.11215 3.52324 3.67351 3.69512 3.90223 4.38192 4.47417 4.60229 4.66761 4.69449 4.74494 4.77435 4.83441 4.89669 4.94225 5.04557 5.14013 5.19121 5.24726 5.37598 5.48660 5.54717 5.62904 5.71421 5.88382 5.90181 6.09090 6.10187 6.13739 6.22914 6.27836 6.39098 6.48614 6.53787 6.59080 6.94481 6.99370 7.17007 7.19997 7.27925 7.88610 8.22549 8.33152 8.66435 8.91044 9.40783 9.70089 10.42608 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002840 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.299907 B = 9856.405570 C =11316.758043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.203 4.203 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.060 4.060 8 C 0.528 3.472 9 O -0.532 6.532 10 N -0.618 5.618 11 C -0.057 4.057 12 C -0.034 4.034 13 N -0.260 5.260 14 N -0.143 5.143 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.771 5.771 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.084 4.084 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.111 4.111 27 C -0.076 4.076 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.396 0.604 35 H 0.175 0.825 36 H 0.274 0.726 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.134 0.866 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -14.846 15.694 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.222 4.222 5 C -0.082 4.082 6 C -0.101 4.101 7 C -0.064 4.064 8 C 0.313 3.687 9 O -0.409 6.409 10 N -0.259 5.259 11 C -0.163 4.163 12 C -0.210 4.210 13 N -0.091 5.091 14 N 0.089 4.911 15 C -0.456 4.456 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.397 5.397 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 C -0.164 4.164 25 C -0.177 4.177 26 C -0.149 4.149 27 C -0.094 4.094 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.013 -13.040 14.843 19.784 hybrid contribution 0.073 -1.197 -0.371 1.255 sum -0.940 -14.237 14.473 20.323 Atomic orbital electron populations 1.23051 0.78424 1.03830 1.01502 1.86053 1.21378 1.27068 1.88819 1.19056 0.92437 0.84051 0.96721 1.21213 1.00058 0.92192 1.08720 1.20837 0.94045 0.97273 0.96020 1.19369 0.93378 0.93388 1.03985 1.20838 0.97798 0.92866 0.94864 1.19466 0.79360 0.86355 0.83496 1.90584 1.43735 1.20297 1.86247 1.42417 1.63512 1.15284 1.04666 1.17279 1.19827 0.94370 0.84774 1.24078 1.06793 0.93999 0.96105 1.78243 1.21964 1.08601 1.00304 1.44533 1.34882 1.06305 1.05370 1.19861 1.46302 1.01548 0.77846 0.86681 1.25631 0.95480 0.94731 1.01233 1.70215 1.31421 1.01738 1.36356 0.85838 0.79248 0.78434 0.80689 1.19616 1.20101 1.18821 1.21258 1.16995 0.95885 0.89329 1.23058 0.93688 0.99051 1.00559 1.22846 0.96434 0.97870 1.00507 1.22826 0.98037 0.99425 0.94622 1.20892 1.00036 0.90653 0.97808 1.20377 0.91271 0.98515 1.06683 0.92499 0.88333 0.92686 0.85486 0.85609 0.77070 0.80837 0.91510 0.83807 0.88939 0.90651 0.89536 0.91181 0.89646 0.89662 0.84869 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.40 10.50 -19.45 -0.20 -3.60 16 3 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.20 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.06 -0.79 9.45 -39.60 -0.37 -1.16 16 6 C -0.10 -1.20 4.65 -104.60 -0.49 -1.68 16 7 C -0.06 -0.77 0.94 -156.00 -0.15 -0.92 16 8 C 0.53 9.33 6.36 -10.99 -0.07 9.26 16 9 O -0.53 -11.34 13.06 5.54 0.07 -11.27 16 10 N -0.62 -11.39 5.41 -10.00 -0.05 -11.44 16 11 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 12 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 13 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 14 N -0.14 -3.98 3.74 -11.41 -0.04 -4.03 16 15 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 16 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 17 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 18 N -0.77 -21.75 11.81 55.49 0.66 -21.09 16 19 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.08 -2.02 11.49 -16.39 -0.19 -2.20 16 24 C -0.13 -1.33 6.32 -25.83 -0.16 -1.49 16 25 C -0.14 -1.56 7.81 -25.83 -0.20 -1.76 16 26 C -0.11 -1.32 6.93 -25.92 -0.18 -1.50 16 27 C -0.08 -0.78 9.04 -39.61 -0.36 -1.13 16 28 C -0.15 -1.57 9.99 -39.43 -0.39 -1.97 16 29 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.40 6.08 8.66 -40.82 -0.35 5.73 16 35 H 0.17 4.59 5.94 -52.48 -0.31 4.28 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.14 2.92 8.06 -52.49 -0.42 2.50 16 38 H 0.09 0.76 6.80 -51.93 -0.35 0.41 16 39 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.17 7.36 -51.92 -0.38 0.78 16 43 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.13 1.08 6.41 -52.49 -0.34 0.74 16 45 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -33.95 375.52 -7.60 -41.55 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.79 Total: 13.08 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.20 Total: -15.62 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.88 Total: -43.89 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.13 Total: -14.88 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.95 -7.60 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750733850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.624 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds