Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00000 * 2 1 4 4 C 1.53001 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47184 * 65.00006 * 4 3 2 6 6 C 1.46897 * 111.00098 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47234 * 179.97438 * 6 5 4 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46902 * 299.99834 * 1 2 3 30 30 H 1.08999 * 109.47343 * 59.99404 * 1 2 3 31 31 H 1.08999 * 109.47055 * 60.00037 * 3 2 1 32 32 H 1.09001 * 109.46629 * 299.99997 * 3 2 1 33 33 H 1.09004 * 109.46740 * 304.99884 * 4 3 2 34 34 H 1.08997 * 109.46833 * 185.00077 * 4 3 2 35 35 H 1.00906 * 111.00382 * 303.94886 * 5 4 3 36 36 H 1.09001 * 109.47374 * 59.99701 * 6 5 4 37 37 H 1.09003 * 109.47024 * 299.99752 * 6 5 4 38 38 H 1.08995 * 109.47307 * 60.00292 * 7 6 5 39 39 H 1.08997 * 109.47129 * 299.99164 * 7 6 5 40 40 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 41 41 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 42 42 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 43 43 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 44 44 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 45 45 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 5.4394 0.4298 -1.2920 7 6 5.8601 -0.2210 -2.6112 8 7 7.3188 -0.3531 -2.6472 9 6 7.9194 -0.9028 -3.7213 10 8 7.2505 -1.2895 -4.6603 11 7 9.2607 -1.0294 -3.7521 12 6 9.8761 -1.7119 -4.8101 13 6 9.1703 -2.6691 -5.5236 14 6 9.7764 -3.3373 -6.5705 15 6 11.0928 -3.0622 -6.9033 16 9 11.6820 -3.7222 -7.9244 17 6 11.8053 -2.1129 -6.1927 18 6 11.2011 -1.4338 -5.1445 19 8 11.8981 -0.5012 -4.4458 20 6 13.1366 -0.2045 -4.8881 21 1 13.5631 -0.7583 -5.7114 22 6 13.8627 0.8114 -4.2861 23 7 15.0716 1.1007 -4.7173 24 14 13.1253 1.7688 -2.8616 25 1 13.4735 1.0997 -1.5825 26 1 13.6678 3.1512 -2.8608 27 1 11.6484 1.8167 -3.0092 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.5294 -0.3311 -1.3938 36 1 5.7682 -0.1921 -0.4594 37 1 5.8960 1.4162 -1.2112 38 1 5.5313 0.4005 -3.4441 39 1 5.4036 -1.2075 -2.6915 40 1 7.8523 -0.0450 -1.8980 41 1 9.8003 -0.6481 -3.0418 42 1 8.1454 -2.8894 -5.2637 43 1 9.2239 -4.0795 -7.1276 44 1 12.8313 -1.8999 -6.4542 45 1 15.5795 1.8118 -4.2963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841146404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = -109.983803 kcal Electronic energy + Delta-G solvation = -28563.166063 eV Core-core repulsion = 24110.715238 eV Total energy + Delta-G solvation = -4452.450825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.24434 -40.42556 -39.00146 -38.59246 -36.97540 -36.36959 -34.46977 -34.19993 -32.49584 -30.89781 -29.55734 -28.64865 -27.27734 -26.26362 -25.40814 -23.00738 -22.38562 -22.15374 -21.57961 -20.63640 -18.45875 -18.24153 -17.81008 -17.12621 -16.97829 -16.55826 -16.19930 -15.84091 -15.47812 -15.41043 -15.24593 -15.00261 -14.89151 -14.34378 -14.19635 -14.13977 -13.89391 -13.80110 -13.43912 -13.25602 -13.20290 -12.53460 -12.44386 -12.31879 -12.13610 -11.96513 -11.84803 -11.74113 -11.45769 -11.43665 -10.98647 -10.80196 -10.47125 -10.15148 -9.99206 -9.77510 -9.55167 -9.11333 -8.99909 -8.88342 -7.94084 -7.16141 -6.53273 -4.20432 1.78633 2.04068 2.65417 3.10093 3.12824 3.22375 3.31733 3.31963 3.77972 4.08867 4.29499 4.36203 4.51350 4.55711 4.64373 4.76048 4.83640 4.87641 4.93533 4.96048 4.99307 5.02183 5.16412 5.20635 5.30104 5.35726 5.49826 5.67502 5.71253 5.75653 5.92281 6.07963 6.33280 6.46799 6.52837 6.63082 6.67245 6.83552 6.90553 6.96739 7.00293 7.12757 7.47905 7.66681 7.88629 8.09362 8.68765 8.79769 9.34828 10.54022 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002274 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.437402 B =12308.048091 C =14663.127899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.062 3.938 5 N -0.684 5.684 6 C 0.047 3.953 7 C 0.142 3.858 8 N -0.747 5.747 9 C 0.705 3.295 10 O -0.578 6.578 11 N -0.667 5.667 12 C 0.085 3.915 13 C -0.063 4.063 14 C -0.216 4.216 15 C 0.123 3.877 16 F -0.149 7.149 17 C -0.242 4.242 18 C 0.160 3.840 19 O -0.212 6.212 20 C -0.390 4.390 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.873 5.873 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.353 0.647 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.409 0.591 42 H 0.151 0.849 43 H 0.125 0.875 44 H 0.149 0.851 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 -0.305 11.510 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.067 4.067 5 N -0.317 5.317 6 C -0.083 4.083 7 C 0.017 3.983 8 N -0.403 5.403 9 C 0.405 3.595 10 O -0.456 6.456 11 N -0.313 5.313 12 C -0.010 4.010 13 C -0.084 4.084 14 C -0.236 4.236 15 C 0.103 3.897 16 F -0.128 7.128 17 C -0.263 4.263 18 C 0.106 3.894 19 O -0.117 6.117 20 C -0.465 4.465 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.510 5.510 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.244 0.756 42 H 0.168 0.832 43 H 0.143 0.857 44 H 0.167 0.833 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.033 0.053 10.542 25.330 hybrid contribution 0.614 0.319 1.651 1.790 sum -22.419 0.372 12.193 25.522 Atomic orbital electron populations 1.22728 0.80729 1.02854 0.99995 1.87840 1.20019 1.28062 1.95452 1.22630 0.93298 0.85000 1.00778 1.21975 0.93355 1.00437 0.90921 1.60332 1.05643 1.30640 1.35072 1.22104 0.88812 1.01026 0.96342 1.21024 0.78605 1.01028 0.97624 1.44954 1.07753 1.67465 1.20153 1.15798 0.81786 0.79039 0.82840 1.90874 1.63736 1.55103 1.35856 1.42240 1.05109 1.57926 1.26025 1.16702 0.90003 0.98954 0.95349 1.20814 1.00429 0.92665 0.94508 1.20565 0.93886 1.06351 1.02820 1.17463 0.91559 0.93730 0.86925 1.91425 1.84458 1.79492 1.57449 1.20952 1.02859 1.01757 1.00743 1.18389 0.89529 0.90598 0.90915 1.83485 1.29106 1.50414 1.48714 1.20749 0.87323 1.19191 1.19217 0.87385 1.24471 0.94935 0.96053 0.98485 1.69642 1.09848 1.30520 1.40973 0.86186 0.80286 0.78913 0.81476 1.19791 1.20681 1.18470 0.89596 0.94199 0.93855 0.92783 0.92066 0.94196 0.89411 0.82858 0.94407 0.90216 0.90526 0.91573 0.77000 0.75611 0.83184 0.85738 0.83339 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.09 10.22 -35.23 -0.36 -3.45 16 3 C 0.06 0.37 6.28 37.16 0.23 0.61 16 4 C 0.06 0.41 6.10 -3.83 -0.02 0.38 16 5 N -0.68 -5.39 6.50 -113.78 -0.74 -6.13 16 6 C 0.05 0.36 5.80 -3.82 -0.02 0.34 16 7 C 0.14 1.46 5.93 -4.03 -0.02 1.44 16 8 N -0.75 -8.72 5.56 -65.22 -0.36 -9.09 16 9 C 0.70 11.38 8.37 -86.92 -0.73 10.65 16 10 O -0.58 -11.02 13.51 5.28 0.07 -10.95 16 11 N -0.67 -11.38 5.30 -14.07 -0.07 -11.46 16 12 C 0.08 1.68 6.45 -83.44 -0.54 1.14 16 13 C -0.06 -1.19 8.71 -39.43 -0.34 -1.53 16 14 C -0.22 -3.94 10.02 -39.48 -0.40 -4.33 16 15 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 16 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 17 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 18 C 0.16 3.54 6.66 -38.94 -0.26 3.28 16 19 O -0.21 -5.12 8.00 0.01 0.00 -5.12 16 20 C -0.39 -10.39 9.94 30.88 0.31 -10.08 16 21 H 0.11 3.00 5.44 -52.48 -0.29 2.71 16 22 C 0.06 1.72 5.49 -17.52 -0.10 1.62 16 23 N -0.87 -24.25 13.96 55.48 0.77 -23.48 16 24 Si 0.91 19.99 28.62 -169.99 -4.86 15.13 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.35 2.88 8.29 -39.29 -0.33 2.56 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.62 8.49 -40.82 -0.35 3.27 16 41 H 0.41 6.36 8.36 -40.82 -0.34 6.02 16 42 H 0.15 2.75 5.78 -52.49 -0.30 2.44 16 43 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.15 3.38 5.63 -52.49 -0.30 3.09 16 45 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -30.88 385.40 -7.24 -38.12 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.11 Total: 12.14 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.42 Total: 1.33 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.40 Total: -50.16 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.29 Total: -19.52 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.86 Total: 15.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.88 -7.24 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.862 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds