Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00000 * 2 1 4 4 C 1.53001 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47184 * 65.00006 * 4 3 2 6 6 C 1.46897 * 111.00098 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47234 * 179.97438 * 6 5 4 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46902 * 299.99834 * 1 2 3 30 30 H 1.08999 * 109.47343 * 59.99404 * 1 2 3 31 31 H 1.08999 * 109.47055 * 60.00037 * 3 2 1 32 32 H 1.09001 * 109.46629 * 299.99997 * 3 2 1 33 33 H 1.09004 * 109.46740 * 304.99884 * 4 3 2 34 34 H 1.08997 * 109.46833 * 185.00077 * 4 3 2 35 35 H 1.00906 * 111.00382 * 303.94886 * 5 4 3 36 36 H 1.09001 * 109.47374 * 59.99701 * 6 5 4 37 37 H 1.09003 * 109.47024 * 299.99752 * 6 5 4 38 38 H 1.08995 * 109.47307 * 60.00292 * 7 6 5 39 39 H 1.08997 * 109.47129 * 299.99164 * 7 6 5 40 40 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 41 41 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 42 42 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 43 43 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 44 44 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 45 45 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 5.4394 0.4298 -1.2920 7 6 5.8601 -0.2210 -2.6112 8 7 7.3188 -0.3531 -2.6472 9 6 7.9194 -0.9028 -3.7213 10 8 7.2505 -1.2895 -4.6603 11 7 9.2607 -1.0294 -3.7521 12 6 9.8761 -1.7119 -4.8101 13 6 9.1703 -2.6691 -5.5236 14 6 9.7764 -3.3373 -6.5705 15 6 11.0928 -3.0622 -6.9033 16 9 11.6820 -3.7222 -7.9244 17 6 11.8053 -2.1129 -6.1927 18 6 11.2011 -1.4338 -5.1445 19 8 11.8981 -0.5012 -4.4458 20 6 13.1366 -0.2045 -4.8881 21 1 13.5631 -0.7583 -5.7114 22 6 13.8627 0.8114 -4.2861 23 7 15.0716 1.1007 -4.7173 24 14 13.1253 1.7688 -2.8616 25 1 13.4735 1.0997 -1.5825 26 1 13.6678 3.1512 -2.8608 27 1 11.6484 1.8167 -3.0092 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.5294 -0.3311 -1.3938 36 1 5.7682 -0.1921 -0.4594 37 1 5.8960 1.4162 -1.2112 38 1 5.5313 0.4005 -3.4441 39 1 5.4036 -1.2075 -2.6915 40 1 7.8523 -0.0450 -1.8980 41 1 9.8003 -0.6481 -3.0418 42 1 8.1454 -2.8894 -5.2637 43 1 9.2239 -4.0795 -7.1276 44 1 12.8313 -1.8999 -6.4542 45 1 15.5795 1.8118 -4.2963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841146404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = -133.503398 kcal Electronic energy + Delta-G solvation = -28564.185949 eV Core-core repulsion = 24110.715238 eV Total energy + Delta-G solvation = -4453.470711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.83250 -41.84956 -40.54082 -39.12102 -38.30440 -37.39588 -35.64374 -35.42229 -34.46146 -31.66777 -31.17450 -29.98269 -28.07329 -27.30189 -26.78979 -24.32331 -23.40584 -22.99546 -22.83924 -21.95187 -20.15194 -19.81578 -19.32487 -18.39923 -17.63324 -17.31287 -17.18781 -16.98522 -16.82746 -16.59781 -16.41697 -16.30126 -15.90402 -15.83213 -15.63778 -15.35094 -15.25723 -15.00005 -14.79610 -14.60613 -14.25524 -13.87116 -13.79061 -13.59107 -13.17969 -12.98891 -12.73770 -12.64121 -12.44903 -12.38629 -12.33880 -12.15878 -11.97083 -11.65289 -11.42949 -11.09028 -10.91732 -10.60601 -10.18339 -9.60406 -9.44873 -8.74760 -8.50390 -6.24642 0.17824 0.40669 1.34008 1.39692 1.48958 1.53069 1.98850 2.27525 2.66008 2.75687 2.89667 2.96324 3.04549 3.39288 3.44458 3.87517 3.90997 4.07228 4.14862 4.18158 4.28356 4.35238 4.45819 4.49554 4.53182 4.55212 4.60148 4.78408 4.85217 4.87984 4.90712 4.92407 4.98194 5.09193 5.17962 5.27428 5.42210 5.46137 5.60154 5.82179 5.90472 5.95657 6.09668 6.24139 6.36667 6.81004 6.90858 7.38031 7.47314 8.60467 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002274 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.437402 B =12308.048091 C =14663.127899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.059 3.941 4 C 0.063 3.937 5 N -0.693 5.693 6 C 0.058 3.942 7 C 0.145 3.855 8 N -0.727 5.727 9 C 0.704 3.296 10 O -0.607 6.607 11 N -0.666 5.666 12 C 0.097 3.903 13 C -0.064 4.064 14 C -0.189 4.189 15 C 0.113 3.887 16 F -0.147 7.147 17 C -0.253 4.253 18 C 0.135 3.865 19 O -0.222 6.222 20 C -0.401 4.401 21 H 0.079 0.921 22 C 0.010 3.990 23 N -0.920 5.920 24 Si 0.974 3.026 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.249 1.249 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.349 0.651 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.416 0.584 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.127 0.873 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.430 -0.203 13.319 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.018 4.018 4 C -0.066 4.066 5 N -0.326 5.326 6 C -0.072 4.072 7 C 0.020 3.980 8 N -0.383 5.383 9 C 0.404 3.596 10 O -0.487 6.487 11 N -0.313 5.313 12 C 0.001 3.999 13 C -0.084 4.084 14 C -0.208 4.208 15 C 0.093 3.907 16 F -0.126 7.126 17 C -0.274 4.274 18 C 0.083 3.917 19 O -0.128 6.128 20 C -0.477 4.477 21 H 0.096 0.904 22 C -0.189 4.189 23 N -0.560 5.560 24 Si 0.795 3.205 25 H -0.184 1.184 26 H -0.201 1.201 27 H -0.172 1.172 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.253 0.747 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.145 0.855 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.842 0.150 12.387 28.658 hybrid contribution 1.278 0.115 0.973 1.611 sum -24.564 0.265 13.360 27.963 Atomic orbital electron populations 1.22859 0.79670 1.03540 1.00700 1.87804 1.21328 1.28992 1.95607 1.22687 0.93110 0.84620 1.01339 1.22039 0.93628 1.00821 0.90143 1.60350 1.05590 1.30577 1.36077 1.21989 0.88918 1.01331 0.94951 1.21074 0.77378 1.00837 0.98670 1.44835 1.08481 1.65780 1.19221 1.15917 0.81181 0.79058 0.83426 1.90847 1.64141 1.56481 1.37277 1.42232 1.05698 1.57852 1.25539 1.16835 0.89042 0.98560 0.95480 1.21044 1.00783 0.92230 0.94365 1.20953 0.92786 1.05388 1.01694 1.17496 0.92241 0.93795 0.87197 1.91430 1.84577 1.79310 1.57239 1.20958 1.02311 1.02701 1.01396 1.18681 0.90616 0.90844 0.91590 1.83433 1.28121 1.51862 1.49404 1.20632 0.88610 1.19484 1.18953 0.90384 1.25372 0.95236 0.96962 1.01363 1.69745 1.11451 1.31788 1.43003 0.85172 0.79912 0.77351 0.78070 1.18398 1.20148 1.17239 0.89021 0.93110 0.93520 0.91259 0.92417 0.94222 0.88291 0.83221 0.93266 0.89434 0.92074 0.91916 0.75138 0.74699 0.81940 0.82247 0.85509 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -5.95 10.22 -148.98 -1.52 -7.47 16 3 C 0.06 0.63 6.28 71.98 0.45 1.09 16 4 C 0.06 0.68 6.10 86.31 0.53 1.21 16 5 N -0.69 -9.56 6.50 -513.90 -3.34 -12.90 16 6 C 0.06 0.74 5.80 86.30 0.50 1.24 16 7 C 0.14 2.67 5.93 86.38 0.51 3.18 16 8 N -0.73 -15.08 5.56 -478.51 -2.66 -17.74 16 9 C 0.70 21.17 8.37 179.06 1.50 22.66 16 10 O -0.61 -21.94 13.51 -4.03 -0.05 -21.99 16 11 N -0.67 -21.49 5.30 -316.70 -1.68 -23.17 16 12 C 0.10 3.71 6.45 38.22 0.25 3.95 16 13 C -0.06 -2.23 8.71 22.37 0.19 -2.04 16 14 C -0.19 -6.38 10.02 22.33 0.22 -6.15 16 15 C 0.11 4.40 7.29 22.37 0.16 4.57 16 16 F -0.15 -5.58 17.26 44.97 0.78 -4.80 16 17 C -0.25 -11.30 9.14 22.42 0.20 -11.10 16 18 C 0.13 6.02 6.66 22.68 0.15 6.17 16 19 O -0.22 -10.84 8.00 -22.88 -0.18 -11.02 16 20 C -0.40 -22.25 9.94 67.91 0.68 -21.57 16 21 H 0.08 4.66 5.44 -2.91 -0.02 4.65 16 22 C 0.01 0.53 5.49 84.83 0.47 1.00 16 23 N -0.92 -52.97 13.96 21.61 0.30 -52.67 16 24 Si 0.97 41.05 28.62 68.60 1.96 43.01 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.35 5.19 8.29 -89.69 -0.74 4.44 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 6.18 8.49 -92.71 -0.79 5.40 16 41 H 0.42 12.11 8.36 -92.71 -0.78 11.33 16 42 H 0.16 5.47 5.78 -2.91 -0.02 5.45 16 43 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.13 6.19 5.63 -2.91 -0.02 6.18 16 45 H 0.29 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.98 385.40 -0.58 -68.56 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -1.24 Total: 34.50 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 7.06 Total: 5.71 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -7.38 Total: -106.49 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.76 Total: -40.49 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.96 Total: 43.01 kcal Total: -67.98 -0.58 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.942 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds