Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00325 * 2 1 4 4 H 1.09005 * 109.50407 * 330.07990 * 3 2 1 5 5 C 1.53138 * 109.50782 * 209.99653 * 3 2 1 6 6 C 1.53242 * 109.52471 * 170.21870 * 5 3 2 7 7 N 1.46560 * 108.78053 * 50.56000 * 6 5 3 8 8 C 1.35397 * 127.54862 * 163.11320 * 7 6 5 9 9 C 1.36599 * 106.69069 * 180.25814 * 8 7 6 10 10 C 1.47294 * 126.19796 * 179.81445 * 9 8 7 11 11 O 1.21631 * 119.99895 * 359.71065 * 10 9 8 12 12 N 1.34776 * 119.99929 * 179.71485 * 10 9 8 13 13 C 1.39871 * 119.99856 * 185.10745 * 12 10 9 14 14 C 1.39310 * 119.94881 * 214.28283 * 13 12 10 15 15 C 1.38479 * 120.42684 * 180.02562 * 14 13 12 16 16 C 1.37687 * 120.32356 * 0.02562 * 15 14 13 17 17 C 1.40742 * 119.88887 * 359.97438 * 16 15 14 18 18 C 1.41403 * 120.20894 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00118 * 205.19717 * 18 17 16 20 20 C 1.39932 * 119.99966 * 25.20010 * 18 17 16 21 21 N 1.30825 * 120.00126 * 16.79089 * 20 18 17 22 22 Si 1.86807 * 119.99758 * 196.79022 * 20 18 17 23 23 H 1.48494 * 109.47318 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46628 * 120.00098 * 22 20 18 25 25 H 1.48499 * 109.47204 * 239.99543 * 22 20 18 26 26 C 1.38252 * 119.95048 * 34.30641 * 13 12 10 27 27 N 1.35886 * 107.60547 * 359.55215 * 9 8 7 28 28 C 1.29785 * 108.96996 * 0.24331 * 27 9 8 29 29 C 1.51113 * 127.17307 * 180.09867 * 28 27 9 30 30 H 1.08994 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47285 * 300.00851 * 1 2 3 32 32 H 1.08998 * 109.46622 * 60.00572 * 1 2 3 33 33 H 1.09004 * 109.46188 * 50.19931 * 5 3 2 34 34 H 1.09001 * 109.44856 * 290.22920 * 5 3 2 35 35 H 1.09000 * 109.58948 * 290.76811 * 6 5 3 36 36 H 1.09008 * 109.70007 * 170.41654 * 6 5 3 37 37 H 1.08004 * 126.65590 * 0.12184 * 8 7 6 38 38 H 0.96998 * 119.99835 * 5.11277 * 12 10 9 39 39 H 1.08009 * 119.78404 * 359.74686 * 14 13 12 40 40 H 1.08002 * 119.83786 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.05471 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00243 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.16057 * 359.97438 * 26 13 12 44 44 H 1.08997 * 109.71905 * 283.69176 * 29 28 27 45 45 H 1.09001 * 109.71331 * 44.34506 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 2.0001 -0.5125 5 6 3.3603 1.2640 -0.7217 6 6 3.8695 2.6931 -0.9379 7 7 3.8096 3.4133 0.3371 8 6 4.4407 4.5657 0.6643 9 6 4.0920 4.8515 1.9538 10 6 4.5423 6.0130 2.7397 11 8 5.3013 6.8246 2.2450 12 7 4.1134 6.1765 4.0068 13 6 4.4542 7.3324 4.7169 14 6 4.6785 7.2643 6.0901 15 6 5.0159 8.4026 6.8029 16 6 5.1329 9.6153 6.1614 17 6 4.9093 9.6995 4.7744 18 6 5.0271 10.9415 4.1089 19 1 4.4895 11.1140 3.1882 20 6 5.8402 11.9472 4.6432 21 7 6.7344 11.6520 5.5513 22 14 5.6487 13.7115 4.0597 23 1 4.5763 13.7804 3.0350 24 1 5.2900 14.5775 5.2115 25 1 6.9283 14.1790 3.4686 26 6 4.5675 8.5408 4.0549 27 7 3.2497 3.8732 2.3782 28 6 3.0796 3.0170 1.4179 29 6 2.2234 1.7721 1.4455 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5137 -0.8900 33 1 3.2414 0.7709 -1.6865 34 1 4.0784 0.7102 -0.1168 35 1 3.2416 3.1976 -1.6723 36 1 4.8993 2.6663 -1.2944 37 1 5.0949 5.1452 0.0298 38 1 3.5684 5.4925 4.4264 39 1 4.5843 6.3184 6.6029 40 1 5.1873 8.3390 7.8673 41 1 5.3959 10.5004 6.7217 42 1 7.2978 12.3492 5.9220 43 1 4.3938 8.5947 2.9903 44 1 2.7283 0.9910 2.0138 45 1 1.2609 1.9980 1.9046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868785921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = -22.416185 kcal Electronic energy + Delta-G solvation = -28236.974292 eV Core-core repulsion = 24219.089908 eV Total energy + Delta-G solvation = -4017.884383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.50491 -41.03517 -39.49832 -38.87084 -36.43360 -36.20634 -34.81562 -33.91513 -31.76964 -31.38560 -29.88403 -29.40441 -27.55546 -27.25917 -25.50265 -24.40326 -23.12118 -22.91347 -22.43070 -20.94019 -20.27762 -19.51419 -18.71325 -17.81349 -17.56400 -17.24198 -16.92663 -16.78503 -16.47113 -16.32881 -16.09823 -15.77384 -15.34893 -15.01349 -14.91088 -14.72070 -14.63514 -14.38247 -14.24711 -13.96283 -13.57727 -13.40675 -13.18597 -12.90045 -12.81496 -12.58168 -12.48517 -12.24369 -12.20987 -12.01741 -11.87095 -11.56598 -11.42185 -11.29022 -11.01344 -10.76640 -10.70178 -10.63298 -9.63048 -9.40472 -8.72318 -8.62205 -6.36716 0.37246 0.93626 1.01746 1.35093 1.37207 1.50385 1.53429 1.53668 2.21196 2.29502 2.44038 2.52393 2.74799 3.09302 3.43287 3.55028 3.73117 3.80697 3.88653 4.01849 4.09019 4.21569 4.34082 4.43016 4.45814 4.49716 4.57420 4.61736 4.68970 4.78596 4.86821 4.91681 4.94690 5.03792 5.06700 5.08232 5.12088 5.21780 5.32459 5.33690 5.73683 5.84899 5.97549 6.06588 6.09901 6.15137 6.33147 6.52766 6.66992 6.81558 6.92824 7.00084 7.27336 8.34841 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.002077 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.088095 B =13480.102351 C =14127.377911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.090 3.910 4 H 0.080 0.920 5 C -0.127 4.127 6 C 0.098 3.902 7 N -0.450 5.450 8 C 0.056 3.944 9 C -0.092 4.092 10 C 0.590 3.410 11 O -0.564 6.564 12 N -0.649 5.649 13 C 0.158 3.842 14 C -0.254 4.254 15 C -0.088 4.088 16 C -0.197 4.197 17 C 0.089 3.911 18 C -0.499 4.499 19 H 0.067 0.933 20 C 0.034 3.966 21 N -0.824 5.824 22 Si 0.987 3.013 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.265 1.265 26 C -0.236 4.236 27 N -0.486 5.486 28 C 0.218 3.782 29 C -0.051 4.051 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.207 0.793 38 H 0.419 0.581 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.289 0.711 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -23.405 -14.364 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.031 3.969 4 H 0.098 0.902 5 C -0.165 4.165 6 C -0.021 4.021 7 N -0.132 5.132 8 C -0.085 4.085 9 C -0.220 4.220 10 C 0.379 3.621 11 O -0.443 6.443 12 N -0.293 5.293 13 C 0.064 3.936 14 C -0.275 4.275 15 C -0.107 4.107 16 C -0.217 4.217 17 C 0.086 3.914 18 C -0.528 4.528 19 H 0.085 0.915 20 C -0.181 4.181 21 N -0.450 5.450 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.181 1.181 25 H -0.189 1.189 26 C -0.258 4.258 27 N -0.206 5.206 28 C -0.047 4.047 29 C -0.090 4.090 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.223 0.777 38 H 0.256 0.744 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.791 -23.052 -13.960 28.673 hybrid contribution 0.164 1.014 -0.435 1.115 sum -9.627 -22.038 -14.395 28.028 Atomic orbital electron populations 1.23039 0.79384 1.04098 1.01011 1.87917 1.21405 1.26636 1.94943 1.22130 0.95858 0.85623 0.93264 0.90209 1.21953 0.95544 0.94726 1.04263 1.22510 1.06215 0.91916 0.81496 1.45760 1.34445 1.18433 1.14534 1.22778 0.99794 0.89618 0.96355 1.20265 1.07591 0.98919 0.95204 1.17474 0.79351 0.83969 0.81257 1.90828 1.36714 1.45634 1.71114 1.43170 1.52278 1.20395 1.13415 1.17580 0.99288 0.85071 0.91617 1.20458 1.15771 0.99117 0.92182 1.20825 0.98498 0.92322 0.99071 1.21322 1.08530 0.97551 0.94255 1.17853 0.88652 0.92348 0.92500 1.19767 1.26057 0.98275 1.08722 0.91513 1.26794 0.92132 1.05352 0.93803 1.69882 1.14634 1.36704 1.23814 0.85106 0.79267 0.75600 0.79336 1.18536 1.18132 1.18935 1.20897 1.15173 0.91794 0.97925 1.70224 1.17088 1.03408 1.29844 1.23803 0.98774 0.99024 0.83116 1.20841 0.98557 0.89594 1.00041 0.88264 0.93405 0.92742 0.85730 0.90119 0.86870 0.85877 0.77658 0.74384 0.85618 0.85682 0.87434 0.89998 0.89644 0.87821 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.82 113.37 1.23 1.36 16 2 O -0.39 -4.15 10.36 -148.98 -1.54 -5.70 16 3 C 0.09 0.83 2.63 30.77 0.08 0.91 16 4 H 0.08 0.61 7.76 -2.38 -0.02 0.60 16 5 C -0.13 -0.78 5.59 30.72 0.17 -0.61 16 6 C 0.10 0.71 6.96 86.45 0.60 1.32 16 7 N -0.45 -8.18 3.13 -512.28 -1.60 -9.79 16 8 C 0.06 1.42 11.36 83.76 0.95 2.37 16 9 C -0.09 -3.13 6.98 40.52 0.28 -2.85 16 10 C 0.59 25.65 7.54 86.63 0.65 26.30 16 11 O -0.56 -28.97 14.62 -4.13 -0.06 -29.03 16 12 N -0.65 -27.90 5.33 -306.69 -1.63 -29.53 16 13 C 0.16 7.95 6.25 38.12 0.24 8.19 16 14 C -0.25 -11.88 9.97 22.59 0.23 -11.66 16 15 C -0.09 -4.32 10.02 22.20 0.22 -4.10 16 16 C -0.20 -11.09 8.69 22.75 0.20 -10.89 16 17 C 0.09 5.38 5.57 -21.31 -0.12 5.26 16 18 C -0.50 -29.77 9.05 23.46 0.21 -29.56 16 19 H 0.07 3.94 7.90 -2.91 -0.02 3.92 16 20 C 0.03 1.83 5.16 85.25 0.44 2.27 16 21 N -0.82 -45.80 10.94 21.82 0.24 -45.56 16 22 Si 0.99 40.93 29.59 68.60 2.03 42.96 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 26 C -0.24 -13.67 8.39 22.85 0.19 -13.47 16 27 N -0.49 -14.64 10.99 -176.08 -1.94 -16.58 16 28 C 0.22 4.74 7.64 138.06 1.06 5.80 16 29 C -0.05 -0.72 5.96 30.11 0.18 -0.54 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.05 0.24 8.09 -2.39 -0.02 0.22 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 35 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.12 0.46 8.14 -2.38 -0.02 0.45 16 37 H 0.21 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.42 15.46 8.54 -92.71 -0.79 14.67 16 39 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.11 6.20 6.17 -2.91 -0.02 6.18 16 42 H 0.29 14.32 8.30 -92.71 -0.77 13.56 16 43 H 0.09 5.17 6.47 -2.91 -0.02 5.15 16 44 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -80.74 377.34 2.54 -78.20 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.24 Total: 34.91 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 6.81 Total: -19.89 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.93 Total: -101.46 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.60 Total: -34.72 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -80.74 2.54 -78.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868785921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.783 kcal (2) G-P(sol) polarization free energy of solvation -80.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds