Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99991 * 2 1 4 4 C 1.50700 * 109.47368 * 179.97438 * 3 2 1 5 5 N 1.31771 * 119.05322 * 89.99952 * 4 3 2 6 6 C 1.33012 * 120.91040 * 180.02562 * 5 4 3 7 7 O 1.35547 * 120.46465 * 180.02562 * 6 5 4 8 8 C 1.38917 * 119.06809 * 359.97438 * 6 5 4 9 9 C 1.39237 * 118.28838 * 0.02562 * 8 6 5 10 10 N 1.38602 * 120.49856 * 179.97438 * 9 8 6 11 11 C 1.47169 * 111.00033 * 66.96741 * 10 9 8 12 12 C 1.52896 * 108.45746 * 52.34310 * 11 10 9 13 13 C 1.50686 * 109.98504 * 50.24945 * 12 11 10 14 14 C 1.41125 * 118.49322 * 163.30265 * 13 12 11 15 15 C 1.41390 * 120.07983 * 359.57716 * 14 13 12 16 16 H 1.07998 * 120.00292 * 26.42017 * 15 14 13 17 17 C 1.39942 * 119.99835 * 206.14085 * 15 14 13 18 18 N 1.30821 * 120.00356 * 15.51815 * 17 15 14 19 19 Si 1.86809 * 119.99912 * 195.51374 * 17 15 14 20 20 H 1.48500 * 109.46968 * 90.00504 * 19 17 15 21 21 H 1.48497 * 109.47082 * 210.00254 * 19 17 15 22 22 H 1.48492 * 109.47040 * 330.00324 * 19 17 15 23 23 C 1.40527 * 119.83555 * 179.85258 * 14 13 12 24 24 C 1.37641 * 119.54069 * 359.54083 * 23 14 13 25 25 C 1.38383 * 120.14414 * 0.54668 * 24 23 14 26 26 C 1.37203 * 121.80877 * 343.09301 * 13 12 11 27 27 C 1.46620 * 111.00460 * 189.93405 * 10 9 8 28 28 N 1.31725 * 119.05560 * 270.29725 * 4 3 2 29 29 H 1.08993 * 109.46591 * 60.00478 * 1 2 3 30 30 H 1.09003 * 109.46846 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47286 * 300.00059 * 1 2 3 32 32 H 1.09000 * 109.47465 * 59.99600 * 3 2 1 33 33 H 1.09001 * 109.47443 * 299.99882 * 3 2 1 34 34 H 0.96698 * 113.99409 * 269.97440 * 7 6 5 35 35 H 1.07999 * 120.85774 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.64223 * 292.65732 * 11 10 9 37 37 H 1.09000 * 109.81283 * 172.13221 * 11 10 9 38 38 H 1.09003 * 109.38519 * 290.09647 * 12 11 10 39 39 H 1.09002 * 109.30417 * 170.35581 * 12 11 10 40 40 H 0.96995 * 120.00422 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.22763 * 179.75489 * 23 14 13 42 42 H 1.08004 * 119.92385 * 180.27982 * 24 23 14 43 43 H 1.08002 * 119.54220 * 179.74618 * 25 24 23 44 44 H 1.09002 * 109.25781 * 49.40040 * 27 10 9 45 45 H 1.09000 * 109.26444 * 168.85813 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1509 1.1358 -1.1510 6 6 5.4762 1.0303 -1.1935 7 8 6.1237 0.9794 -2.3833 8 6 6.1874 0.9742 -0.0016 9 6 5.4765 1.0307 1.1943 10 7 6.1398 0.9778 2.4101 11 6 6.9625 2.1808 2.6148 12 6 6.0807 3.4119 2.4042 13 6 4.8179 3.2860 3.2167 14 6 4.0469 4.4455 3.4467 15 6 4.4683 5.6913 2.9275 16 1 5.0884 5.7262 2.0440 17 6 4.0770 6.8793 3.5551 18 7 3.5895 6.8482 4.7687 19 14 4.2507 8.5096 2.6598 20 1 3.0062 8.7924 1.9005 21 1 4.4854 9.5939 3.6470 22 1 5.3985 8.4386 1.7203 23 6 2.8625 4.3598 4.1981 24 6 2.4607 3.1407 4.6950 25 6 3.2252 2.0104 4.4649 26 6 4.4040 2.0820 3.7280 27 6 5.1936 0.8162 3.5184 28 7 4.1493 1.1303 1.1524 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 6.2418 0.0840 -2.7287 35 1 7.2640 0.8882 -0.0024 36 1 7.7825 2.1904 1.8967 37 1 7.3632 2.1863 3.6285 38 1 5.8244 3.4970 1.3482 39 1 6.6250 4.3029 2.7173 40 1 3.3187 7.6717 5.2038 41 1 2.2697 5.2438 4.3813 42 1 1.5491 3.0669 5.2694 43 1 2.9030 1.0595 4.8629 44 1 4.5092 -0.0010 3.2905 45 1 5.7436 0.5804 4.4294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894823470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = -17.238137 kcal Electronic energy + Delta-G solvation = -30648.710358 eV Core-core repulsion = 26631.050512 eV Total energy + Delta-G solvation = -4017.659846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63364 -40.73383 -39.04705 -38.64659 -37.79355 -35.54182 -34.05704 -33.08873 -33.02240 -31.20731 -30.34728 -29.17654 -27.07351 -26.81607 -26.27033 -24.64307 -24.00449 -22.96281 -22.33370 -20.75246 -19.70199 -18.98130 -18.69902 -17.77412 -17.47851 -17.25730 -16.67083 -16.57246 -16.53047 -16.27900 -16.21864 -15.88725 -15.68906 -15.04238 -14.69079 -14.46620 -14.29091 -14.05644 -13.75808 -13.43702 -13.34989 -13.16100 -13.11647 -13.01851 -12.80910 -12.62807 -12.54849 -12.41740 -12.15679 -12.03837 -11.89363 -11.56564 -11.38838 -11.05657 -11.01837 -10.77897 -10.64400 -10.37634 -9.55969 -9.15342 -8.93605 -8.58915 -6.31201 -0.25417 -0.02251 1.01027 1.15536 1.33368 1.44625 1.50431 2.10664 2.17335 2.31696 2.61964 2.76143 2.80655 3.35856 3.63230 3.72005 3.91019 4.00733 4.06605 4.13372 4.19447 4.24589 4.30790 4.43408 4.49102 4.53930 4.57300 4.58761 4.64337 4.68640 4.82846 4.84163 4.92020 4.96657 5.04619 5.13881 5.21195 5.37211 5.42231 5.60569 5.79305 5.92209 6.00533 6.04461 6.09395 6.21594 6.28151 6.42239 6.55515 6.75277 6.99092 7.06981 7.11861 8.35828 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.004482 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.972549 B = 6245.048856 C = 6631.133877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.140 3.860 4 C 0.348 3.652 5 N -0.561 5.561 6 C 0.364 3.636 7 O -0.475 6.475 8 C -0.239 4.239 9 C 0.362 3.638 10 N -0.459 5.459 11 C 0.066 3.934 12 C -0.078 4.078 13 C -0.191 4.191 14 C 0.084 3.916 15 C -0.491 4.491 16 H 0.066 0.934 17 C 0.038 3.962 18 N -0.828 5.828 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.195 4.195 24 C -0.112 4.112 25 C -0.223 4.223 26 C -0.056 4.056 27 C 0.110 3.890 28 N -0.533 5.533 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.428 0.572 35 H 0.181 0.819 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.284 0.716 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -11.674 -8.188 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C 0.062 3.938 4 C 0.077 3.923 5 N -0.290 5.290 6 C 0.178 3.822 7 O -0.285 6.285 8 C -0.264 4.264 9 C 0.124 3.876 10 N -0.176 5.176 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.193 4.193 14 C 0.082 3.918 15 C -0.521 4.521 16 H 0.085 0.915 17 C -0.176 4.176 18 N -0.455 5.455 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.214 4.214 24 C -0.130 4.130 25 C -0.243 4.243 26 C -0.057 4.057 27 C -0.017 4.017 28 N -0.254 5.254 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.291 0.709 35 H 0.199 0.801 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.400 -11.478 -7.957 14.171 hybrid contribution -0.231 1.492 -0.156 1.518 sum 2.169 -9.986 -8.113 13.048 Atomic orbital electron populations 1.23000 0.78285 1.04367 1.01165 1.87837 1.22340 1.26157 1.95683 1.20873 0.84543 0.86072 1.02340 1.22404 0.96805 0.90777 0.82304 1.67696 1.11037 1.18752 1.31496 1.19235 0.86129 0.90450 0.86378 1.84698 1.74443 1.36212 1.33177 1.22552 1.04316 1.09051 0.90529 1.20227 0.87706 0.87594 0.92115 1.59965 1.21364 1.36561 0.99670 1.22503 0.94563 0.83815 1.05032 1.20613 0.94779 0.99398 0.96799 1.19464 0.98576 0.93475 1.07763 1.17814 0.90486 0.92730 0.90735 1.19642 1.29773 0.91219 1.11497 0.91538 1.26595 0.92293 1.04158 0.94536 1.69880 1.32593 1.31029 1.11949 0.85384 0.79601 0.76869 0.78978 1.19227 1.19124 1.18449 1.21168 0.98326 0.96287 1.05647 1.20805 0.98953 0.93389 0.99864 1.20479 0.98292 0.97208 1.08288 1.19602 0.95565 0.93776 0.96796 1.20919 0.92912 0.95024 0.92851 1.68429 1.10319 1.16330 1.30372 0.92372 0.87517 0.93497 0.91424 0.89623 0.70897 0.80146 0.87011 0.87718 0.95238 0.91587 0.90513 0.88850 0.88086 0.87316 0.89786 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -12.27 10.69 -148.98 -1.59 -13.87 16 3 C 0.14 4.57 6.37 71.24 0.45 5.03 16 4 C 0.35 12.59 7.27 138.78 1.01 13.60 16 5 N -0.56 -19.02 10.35 -300.83 -3.11 -22.13 16 6 C 0.36 10.43 7.82 84.68 0.66 11.09 16 7 O -0.47 -10.29 13.57 -88.53 -1.20 -11.50 16 8 C -0.24 -6.56 9.52 22.67 0.22 -6.34 16 9 C 0.36 11.89 4.35 133.00 0.58 12.47 16 10 N -0.46 -13.92 5.04 -706.13 -3.56 -17.47 16 11 C 0.07 1.92 5.80 86.22 0.50 2.42 16 12 C -0.08 -3.08 4.25 29.81 0.13 -2.95 16 13 C -0.19 -8.88 5.35 -19.40 -0.10 -8.98 16 14 C 0.08 4.53 5.57 -21.24 -0.12 4.41 16 15 C -0.49 -26.55 8.11 23.46 0.19 -26.36 16 16 H 0.07 3.55 7.02 -2.91 -0.02 3.53 16 17 C 0.04 1.96 5.17 85.26 0.44 2.40 16 18 N -0.83 -44.06 10.90 21.83 0.24 -43.83 16 19 Si 0.97 39.40 29.59 68.60 2.03 41.43 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 23 C -0.19 -10.45 8.68 22.69 0.20 -10.26 16 24 C -0.11 -5.29 10.02 22.16 0.22 -5.06 16 25 C -0.22 -9.63 9.65 22.54 0.22 -9.41 16 26 C -0.06 -2.34 4.45 -19.89 -0.09 -2.43 16 27 C 0.11 3.64 5.19 85.60 0.44 4.08 16 28 N -0.53 -20.00 7.50 -185.62 -1.39 -21.39 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.43 4.27 9.06 -74.06 -0.67 3.60 16 35 H 0.18 3.71 7.95 -2.91 -0.02 3.68 16 36 H 0.11 2.54 7.83 -2.38 -0.02 2.52 16 37 H 0.10 2.81 8.06 -2.39 -0.02 2.80 16 38 H 0.03 1.25 7.39 -2.39 -0.02 1.23 16 39 H 0.07 2.75 7.37 -2.39 -0.02 2.73 16 40 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 41 H 0.09 5.33 6.17 -2.91 -0.02 5.31 16 42 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.08 2.82 7.69 -2.39 -0.02 2.80 16 45 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -69.17 369.33 -2.03 -71.20 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.36 Total: 32.01 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 6.20 Total: -14.46 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -7.82 Total: -104.82 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -2.79 Total: -25.36 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -69.17 -2.03 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894823470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.958 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds