Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99844 * 2 1 4 4 C 1.38759 * 120.17630 * 0.02562 * 3 2 1 5 5 C 1.37825 * 119.71770 * 179.90042 * 4 3 2 6 6 C 1.38962 * 120.62698 * 0.05972 * 5 4 3 7 7 C 1.37708 * 119.76422 * 0.15152 * 6 5 4 8 8 C 1.38428 * 120.17781 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.56257 * 179.31092 * 7 6 5 10 10 C 1.52729 * 110.59267 * 17.79420 * 9 7 6 11 11 C 1.53299 * 108.35595 * 308.88226 * 10 9 7 12 12 H 1.09008 * 109.70479 * 310.18631 * 11 10 9 13 13 C 1.50701 * 109.64970 * 189.63998 * 11 10 9 14 14 O 1.21297 * 119.99604 * 1.07537 * 13 11 10 15 15 N 1.34777 * 119.99965 * 181.07950 * 13 11 10 16 16 C 1.40592 * 119.99837 * 179.97438 * 15 13 11 17 17 C 1.40654 * 126.07987 * 0.02562 * 16 15 13 18 18 N 1.30907 * 108.38544 * 179.97438 * 17 16 15 19 19 N 1.40074 * 108.40783 * 0.02562 * 18 17 16 20 20 C 1.37318 * 126.06796 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00001 * 174.10446 * 20 19 18 22 22 C 1.38987 * 120.00354 * 354.11283 * 20 19 18 23 23 N 1.31297 * 119.99982 * 5.91427 * 22 20 19 24 24 Si 1.86801 * 119.99906 * 185.91688 * 22 20 19 25 25 H 1.48497 * 109.47026 * 94.98045 * 24 22 20 26 26 H 1.48505 * 109.47053 * 214.97582 * 24 22 20 27 27 H 1.48494 * 109.47283 * 334.97873 * 24 22 20 28 28 C 1.35678 * 126.08420 * 179.71625 * 16 15 13 29 29 C 1.50651 * 117.69572 * 180.21638 * 6 5 4 30 30 H 1.08997 * 109.47227 * 299.99186 * 1 2 3 31 31 H 1.09000 * 109.47388 * 59.99751 * 1 2 3 32 32 H 1.09002 * 109.46601 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.14298 * 359.92456 * 4 3 2 34 34 H 1.08000 * 119.69130 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.74563 * 359.95872 * 8 3 2 36 36 H 1.08995 * 109.25443 * 138.08394 * 9 7 6 37 37 H 1.09004 * 109.25139 * 257.54916 * 9 7 6 38 38 H 1.09007 * 109.67774 * 68.60393 * 10 9 7 39 39 H 1.09000 * 109.68128 * 189.11961 * 10 9 7 40 40 H 0.96994 * 120.00179 * 0.02562 * 15 13 11 41 41 H 1.07999 * 125.80929 * 359.96626 * 17 16 15 42 42 H 0.96995 * 119.99908 * 180.02562 * 23 22 20 43 43 H 1.08003 * 126.24581 * 0.02562 * 28 16 15 44 44 H 1.08995 * 109.25197 * 318.02803 * 29 6 5 45 45 H 1.08998 * 109.24991 * 77.49432 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2938 2.3769 0.0005 5 6 1.9292 3.5999 0.0026 6 6 3.3167 3.6768 0.0029 7 6 4.0654 2.5210 -0.0020 8 6 3.4281 1.2877 -0.0005 9 6 5.5717 2.5308 -0.0173 10 6 6.1044 3.8965 0.4112 11 6 5.4037 4.9724 -0.4264 12 1 5.4582 4.7092 -1.4828 13 6 6.0701 6.3050 -0.1997 14 8 7.0262 6.3864 0.5424 15 7 5.6037 7.4061 -0.8213 16 6 6.2251 8.6493 -0.6094 17 6 7.3358 8.8896 0.2195 18 7 7.6267 10.1646 0.1606 19 7 6.7168 10.7865 -0.7040 20 6 6.6919 12.1207 -1.0279 21 1 6.0056 12.4811 -1.7799 22 6 7.5500 13.0073 -0.3882 23 7 8.4631 12.5552 0.4399 24 14 7.4042 14.8422 -0.7066 25 1 6.5544 15.4606 0.3425 26 1 8.7549 15.4587 -0.6765 27 1 6.7875 15.0660 -2.0387 28 6 5.8637 9.8296 -1.1725 29 6 3.9421 5.0473 0.0103 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2149 2.3264 -0.0003 34 1 1.3434 4.5072 0.0034 35 1 4.0151 0.3811 -0.0003 36 1 5.9431 1.7690 0.6682 37 1 5.9224 2.3090 -1.0252 38 1 5.8926 4.0580 1.4682 39 1 7.1802 3.9407 0.2414 40 1 4.8389 7.3410 -1.4143 41 1 7.8594 8.1484 0.8049 42 1 9.0617 13.1741 0.8867 43 1 5.0479 9.9844 -1.8632 44 1 3.3952 5.6956 -0.6744 45 1 3.8886 5.4613 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900437440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 23.250641 kcal Electronic energy + Delta-G solvation = -28181.126687 eV Core-core repulsion = 24165.222566 eV Total energy + Delta-G solvation = -4015.904121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.79477 -39.94690 -39.11085 -38.09667 -35.21948 -34.19413 -33.21919 -32.67752 -30.31367 -29.96241 -29.54215 -27.82685 -27.09003 -24.97207 -24.12045 -23.00540 -22.46581 -21.04410 -20.47574 -19.44727 -19.24703 -17.93941 -17.50498 -16.84054 -16.38206 -16.04271 -15.60030 -15.39739 -15.27969 -14.96806 -14.52341 -14.32763 -13.97927 -13.84641 -13.78627 -13.52679 -13.26566 -13.10521 -12.86758 -12.70791 -12.40658 -12.22651 -12.04658 -11.68759 -11.41056 -11.33618 -11.26342 -11.18451 -10.96369 -10.90043 -10.87857 -10.52164 -10.51170 -10.10607 -9.14447 -9.06469 -8.97709 -8.77125 -8.25291 -8.03214 -6.66705 -6.54450 -4.20844 1.09554 1.20338 2.85920 2.96276 3.05225 3.06238 3.11166 3.48291 3.62937 3.70372 3.89872 4.39619 4.46924 4.51075 4.58440 4.72046 4.77915 4.78229 4.86412 4.93028 4.94674 4.97501 5.03075 5.09133 5.29781 5.33003 5.38875 5.41185 5.50690 5.65364 5.78033 5.81676 5.86187 6.07329 6.10651 6.19443 6.26123 6.29119 6.45517 6.49986 6.59402 6.94000 6.99195 7.12613 7.16325 7.27555 7.88483 8.22185 8.32543 8.66494 8.91146 9.40652 9.69806 10.41924 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.001898 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790911 B =14751.103535 C =15499.916704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.083 4.083 10 C -0.098 4.098 11 C -0.101 4.101 12 H 0.097 0.903 13 C 0.503 3.497 14 O -0.534 6.534 15 N -0.625 5.625 16 C -0.059 4.059 17 C -0.033 4.033 18 N -0.261 5.261 19 N -0.144 5.144 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.047 3.953 23 N -0.770 5.770 24 Si 0.934 3.066 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.084 4.084 29 C -0.068 4.068 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.176 0.824 42 H 0.274 0.726 43 H 0.145 0.855 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 -20.572 -2.897 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.033 4.033 8 C -0.173 4.173 9 C -0.119 4.119 10 C -0.136 4.136 11 C -0.123 4.123 12 H 0.115 0.885 13 C 0.289 3.711 14 O -0.411 6.411 15 N -0.267 5.267 16 C -0.165 4.165 17 C -0.209 4.209 18 N -0.093 5.093 19 N 0.088 4.912 20 C -0.457 4.457 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.397 5.397 24 Si 0.758 3.242 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.235 4.235 29 C -0.105 4.105 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.229 0.771 41 H 0.192 0.808 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.097 0.903 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.217 -19.700 -1.802 23.791 hybrid contribution -1.569 0.249 -0.847 1.800 sum -14.786 -19.450 -2.649 24.576 Atomic orbital electron populations 1.23034 0.78492 1.03816 1.01353 1.86056 1.21294 1.27090 1.88946 1.18900 0.92336 0.84060 0.97085 1.21130 0.99875 0.92368 1.09391 1.20958 0.93856 0.97211 0.97588 1.19487 0.93068 0.94547 1.03563 1.19470 0.95763 0.91310 0.96792 1.20387 0.91293 0.98164 1.07465 1.20565 0.90212 0.98616 1.02543 1.21358 1.00705 0.91529 1.00009 1.21271 0.95340 0.93551 1.02148 0.88525 1.20284 0.84683 0.84964 0.81180 1.90590 1.27739 1.85491 1.37308 1.42566 1.32195 1.06013 1.45916 1.17302 1.03524 0.84419 1.11231 1.24108 0.98459 0.94944 1.03389 1.78242 1.12821 1.04702 1.13496 1.44537 1.16053 1.05613 1.24967 1.19861 1.23172 0.78807 1.23824 0.86668 1.25636 0.94800 1.01237 0.95384 1.70225 1.13042 1.35640 1.20760 0.85826 0.78386 0.80673 0.79342 1.19672 1.20113 1.18811 1.21264 1.03197 0.88788 1.10224 1.20393 0.93597 0.93603 1.02902 0.92685 0.92691 0.88349 0.85617 0.85677 0.85365 0.90132 0.90120 0.90877 0.89923 0.77146 0.80754 0.91506 0.83791 0.90325 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.04 10.50 -19.42 -0.20 -3.24 16 3 C 0.12 1.22 6.68 -39.32 -0.26 0.96 16 4 C -0.21 -1.90 9.04 -39.54 -0.36 -2.26 16 5 C -0.08 -0.73 9.60 -39.46 -0.38 -1.11 16 6 C -0.11 -1.09 5.74 -104.57 -0.60 -1.69 16 7 C -0.03 -0.34 5.74 -104.63 -0.60 -0.94 16 8 C -0.15 -1.56 9.55 -39.29 -0.38 -1.94 16 9 C -0.08 -0.76 5.67 -28.05 -0.16 -0.92 16 10 C -0.10 -1.13 4.72 -26.72 -0.13 -1.25 16 11 C -0.10 -1.21 2.55 -91.76 -0.23 -1.44 16 12 H 0.10 1.00 8.10 -51.92 -0.42 0.58 16 13 C 0.50 8.49 7.11 -10.98 -0.08 8.41 16 14 O -0.53 -11.22 12.99 5.54 0.07 -11.15 16 15 N -0.62 -10.85 5.37 -10.00 -0.05 -10.91 16 16 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 17 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 18 N -0.26 -7.67 10.42 30.80 0.32 -7.34 16 19 N -0.14 -3.97 3.74 -11.41 -0.04 -4.01 16 20 C -0.32 -8.63 10.24 -14.82 -0.15 -8.78 16 21 H 0.12 2.74 7.84 -52.48 -0.41 2.33 16 22 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 23 N -0.77 -21.68 11.84 55.49 0.66 -21.02 16 24 Si 0.93 19.02 29.56 -169.99 -5.02 14.00 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 28 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 29 C -0.07 -0.71 4.82 -28.05 -0.14 -0.84 16 30 H 0.05 0.26 7.67 -51.93 -0.40 -0.13 16 31 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 0.87 6.33 -52.48 -0.33 0.54 16 34 H 0.13 0.95 8.05 -52.49 -0.42 0.53 16 35 H 0.13 1.14 8.05 -52.48 -0.42 0.72 16 36 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.91 8.10 -51.92 -0.42 0.49 16 39 H 0.08 1.02 7.80 -51.93 -0.40 0.62 16 40 H 0.40 5.29 8.44 -40.82 -0.34 4.94 16 41 H 0.18 4.59 5.92 -52.49 -0.31 4.28 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 43 H 0.14 2.82 8.06 -52.48 -0.42 2.40 16 44 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 45 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -34.54 372.40 -8.11 -42.66 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.94 Total: 10.12 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -3.51 Total: -14.71 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.88 Total: -43.28 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.13 Total: -14.39 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.54 -8.11 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.909 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds