Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99844 * 2 1 4 4 C 1.38759 * 120.17630 * 0.02562 * 3 2 1 5 5 C 1.37825 * 119.71770 * 179.90042 * 4 3 2 6 6 C 1.38962 * 120.62698 * 0.05972 * 5 4 3 7 7 C 1.37708 * 119.76422 * 0.15152 * 6 5 4 8 8 C 1.38428 * 120.17781 * 180.02562 * 3 2 1 9 9 C 1.50641 * 122.56257 * 179.31092 * 7 6 5 10 10 C 1.52729 * 110.59267 * 17.79420 * 9 7 6 11 11 C 1.53299 * 108.35595 * 308.88226 * 10 9 7 12 12 H 1.09008 * 109.70479 * 310.18631 * 11 10 9 13 13 C 1.50701 * 109.64970 * 189.63998 * 11 10 9 14 14 O 1.21297 * 119.99604 * 1.07537 * 13 11 10 15 15 N 1.34777 * 119.99965 * 181.07950 * 13 11 10 16 16 C 1.40592 * 119.99837 * 179.97438 * 15 13 11 17 17 C 1.40654 * 126.07987 * 0.02562 * 16 15 13 18 18 N 1.30907 * 108.38544 * 179.97438 * 17 16 15 19 19 N 1.40074 * 108.40783 * 0.02562 * 18 17 16 20 20 C 1.37318 * 126.06796 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00001 * 174.10446 * 20 19 18 22 22 C 1.38987 * 120.00354 * 354.11283 * 20 19 18 23 23 N 1.31297 * 119.99982 * 5.91427 * 22 20 19 24 24 Si 1.86801 * 119.99906 * 185.91688 * 22 20 19 25 25 H 1.48497 * 109.47026 * 94.98045 * 24 22 20 26 26 H 1.48505 * 109.47053 * 214.97582 * 24 22 20 27 27 H 1.48494 * 109.47283 * 334.97873 * 24 22 20 28 28 C 1.35678 * 126.08420 * 179.71625 * 16 15 13 29 29 C 1.50651 * 117.69572 * 180.21638 * 6 5 4 30 30 H 1.08997 * 109.47227 * 299.99186 * 1 2 3 31 31 H 1.09000 * 109.47388 * 59.99751 * 1 2 3 32 32 H 1.09002 * 109.46601 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.14298 * 359.92456 * 4 3 2 34 34 H 1.08000 * 119.69130 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.74563 * 359.95872 * 8 3 2 36 36 H 1.08995 * 109.25443 * 138.08394 * 9 7 6 37 37 H 1.09004 * 109.25139 * 257.54916 * 9 7 6 38 38 H 1.09007 * 109.67774 * 68.60393 * 10 9 7 39 39 H 1.09000 * 109.68128 * 189.11961 * 10 9 7 40 40 H 0.96994 * 120.00179 * 0.02562 * 15 13 11 41 41 H 1.07999 * 125.80929 * 359.96626 * 17 16 15 42 42 H 0.96995 * 119.99908 * 180.02562 * 23 22 20 43 43 H 1.08003 * 126.24581 * 0.02562 * 28 16 15 44 44 H 1.08995 * 109.25197 * 318.02803 * 29 6 5 45 45 H 1.08998 * 109.24991 * 77.49432 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2938 2.3769 0.0005 5 6 1.9292 3.5999 0.0026 6 6 3.3167 3.6768 0.0029 7 6 4.0654 2.5210 -0.0020 8 6 3.4281 1.2877 -0.0005 9 6 5.5717 2.5308 -0.0173 10 6 6.1044 3.8965 0.4112 11 6 5.4037 4.9724 -0.4264 12 1 5.4582 4.7092 -1.4828 13 6 6.0701 6.3050 -0.1997 14 8 7.0262 6.3864 0.5424 15 7 5.6037 7.4061 -0.8213 16 6 6.2251 8.6493 -0.6094 17 6 7.3358 8.8896 0.2195 18 7 7.6267 10.1646 0.1606 19 7 6.7168 10.7865 -0.7040 20 6 6.6919 12.1207 -1.0279 21 1 6.0056 12.4811 -1.7799 22 6 7.5500 13.0073 -0.3882 23 7 8.4631 12.5552 0.4399 24 14 7.4042 14.8422 -0.7066 25 1 6.5544 15.4606 0.3425 26 1 8.7549 15.4587 -0.6765 27 1 6.7875 15.0660 -2.0387 28 6 5.8637 9.8296 -1.1725 29 6 3.9421 5.0473 0.0103 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2149 2.3264 -0.0003 34 1 1.3434 4.5072 0.0034 35 1 4.0151 0.3811 -0.0003 36 1 5.9431 1.7690 0.6682 37 1 5.9224 2.3090 -1.0252 38 1 5.8926 4.0580 1.4682 39 1 7.1802 3.9407 0.2414 40 1 4.8389 7.3410 -1.4143 41 1 7.8594 8.1484 0.8049 42 1 9.0617 13.1741 0.8867 43 1 5.0479 9.9844 -1.8632 44 1 3.3952 5.6956 -0.6744 45 1 3.8886 5.4613 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900437440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 1.636715 kcal Electronic energy + Delta-G solvation = -28182.063937 eV Core-core repulsion = 24165.222566 eV Total energy + Delta-G solvation = -4016.841371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.85350 -41.34644 -40.42567 -39.10589 -36.16118 -35.84226 -34.95636 -33.53833 -32.22302 -30.88726 -30.37211 -29.38484 -27.83863 -26.76886 -25.08153 -23.99348 -23.18241 -22.81262 -21.82446 -21.16361 -20.30685 -19.28386 -18.58648 -18.07593 -17.39610 -17.18563 -16.84685 -16.61614 -16.52570 -15.95070 -15.70793 -15.60062 -15.25189 -14.98598 -14.85639 -14.69701 -14.49478 -14.42670 -14.06378 -13.58382 -13.48375 -13.27942 -13.10571 -12.95474 -12.88899 -12.77448 -12.73043 -12.14922 -12.06306 -11.98984 -11.82062 -11.79348 -11.58002 -11.32887 -10.99424 -10.80160 -10.52047 -10.07950 -9.67918 -8.96475 -8.49592 -8.45918 -6.22631 0.39619 0.47791 1.24097 1.40363 1.55444 1.58580 1.89452 2.07559 2.34241 2.40756 2.55663 2.77229 2.94279 3.09533 3.58832 3.68920 3.90555 3.94022 4.06686 4.12744 4.24003 4.31974 4.37213 4.41727 4.46450 4.52029 4.59269 4.62164 4.63171 4.71989 4.75920 4.90235 4.97667 5.02632 5.04591 5.12611 5.14222 5.21594 5.31664 5.35426 5.39747 5.46680 5.53530 5.72273 5.88866 5.98170 6.34847 6.49666 6.76024 6.81354 7.44862 7.50605 7.71223 8.53673 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.001898 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790911 B =14751.103535 C =15499.916704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.041 4.041 8 C -0.168 4.168 9 C -0.074 4.074 10 C -0.097 4.097 11 C -0.087 4.087 12 H 0.123 0.877 13 C 0.502 3.498 14 O -0.578 6.578 15 N -0.616 5.616 16 C -0.043 4.043 17 C -0.061 4.061 18 N -0.313 5.313 19 N -0.170 5.170 20 C -0.355 4.355 21 H 0.141 0.859 22 C -0.007 4.007 23 N -0.826 5.826 24 Si 1.019 2.981 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.242 1.242 28 C -0.080 4.080 29 C -0.061 4.061 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.419 0.581 41 H 0.166 0.834 42 H 0.276 0.724 43 H 0.188 0.812 44 H 0.100 0.900 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.939 -21.033 -4.783 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.041 4.041 8 C -0.186 4.186 9 C -0.111 4.111 10 C -0.135 4.135 11 C -0.108 4.108 12 H 0.141 0.859 13 C 0.291 3.709 14 O -0.457 6.457 15 N -0.260 5.260 16 C -0.149 4.149 17 C -0.236 4.236 18 N -0.145 5.145 19 N 0.061 4.939 20 C -0.486 4.486 21 H 0.158 0.842 22 C -0.219 4.219 23 N -0.454 5.454 24 Si 0.838 3.162 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.165 1.165 28 C -0.230 4.230 29 C -0.099 4.099 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.256 0.744 41 H 0.183 0.817 42 H 0.085 0.915 43 H 0.205 0.795 44 H 0.118 0.882 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.251 -20.210 -3.722 26.199 hybrid contribution -0.728 0.176 -0.245 0.788 sum -16.978 -20.034 -3.967 26.559 Atomic orbital electron populations 1.23311 0.76597 1.05423 1.02178 1.86034 1.23343 1.27004 1.88854 1.19105 0.92600 0.84715 0.96957 1.21385 1.01016 0.91894 1.08674 1.21189 0.93626 0.98130 0.96918 1.19505 0.93664 0.94136 1.04598 1.19562 0.96024 0.91490 0.97027 1.20531 0.91790 0.98405 1.07908 1.20513 0.89877 0.97136 1.03586 1.21319 1.00039 0.92999 0.99157 1.21252 0.95848 0.90022 1.03723 0.85947 1.21268 0.83854 0.86243 0.79562 1.90582 1.29828 1.86281 1.39011 1.42531 1.32735 1.04197 1.46587 1.17376 1.01965 0.86534 1.09048 1.24155 1.00255 0.94399 1.04805 1.78137 1.14879 1.06021 1.15431 1.44833 1.16796 1.06625 1.25650 1.20610 1.24163 0.78922 1.24895 0.84176 1.26885 0.93751 1.06748 0.94475 1.70408 1.14605 1.37702 1.22687 0.84582 0.78278 0.73255 0.80112 1.19223 1.20215 1.16480 1.22015 1.03204 0.87980 1.09803 1.20341 0.92460 0.94426 1.02625 0.91921 0.91711 0.86525 0.83542 0.83871 0.84781 0.89104 0.88665 0.92463 0.91234 0.74377 0.81716 0.91464 0.79472 0.88173 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 113.37 1.11 1.28 16 2 O -0.34 -5.85 10.50 -92.42 -0.97 -6.82 16 3 C 0.11 2.05 6.68 22.44 0.15 2.20 16 4 C -0.21 -3.32 9.04 22.30 0.20 -3.12 16 5 C -0.08 -1.30 9.60 22.35 0.21 -1.09 16 6 C -0.12 -2.19 5.74 -19.83 -0.11 -2.30 16 7 C -0.04 -0.76 5.74 -19.87 -0.11 -0.88 16 8 C -0.17 -3.15 9.55 22.46 0.21 -2.93 16 9 C -0.07 -1.26 5.67 29.74 0.17 -1.09 16 10 C -0.10 -2.18 4.72 30.60 0.14 -2.04 16 11 C -0.09 -1.93 2.55 -11.53 -0.03 -1.96 16 12 H 0.12 2.16 8.10 -2.38 -0.02 2.14 16 13 C 0.50 16.67 7.11 87.66 0.62 17.29 16 14 O -0.58 -24.96 12.99 -3.08 -0.04 -25.00 16 15 N -0.62 -20.44 5.37 -303.93 -1.63 -22.07 16 16 C -0.04 -1.97 6.90 37.73 0.26 -1.70 16 17 C -0.06 -3.35 10.85 85.42 0.93 -2.42 16 18 N -0.31 -19.09 10.42 -56.46 -0.59 -19.67 16 19 N -0.17 -9.48 3.74 -190.01 -0.71 -10.19 16 20 C -0.35 -18.88 10.24 84.01 0.86 -18.02 16 21 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 22 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 23 N -0.83 -48.24 11.84 21.66 0.26 -47.99 16 24 Si 1.02 38.82 29.56 68.60 2.03 40.85 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 26 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 28 C -0.08 -3.67 11.49 83.38 0.96 -2.71 16 29 C -0.06 -1.15 4.82 29.74 0.14 -1.00 16 30 H 0.06 0.45 7.67 -2.39 -0.02 0.44 16 31 H 0.06 0.44 7.67 -2.39 -0.02 0.42 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.15 1.58 6.33 -2.91 -0.02 1.56 16 34 H 0.14 1.71 8.05 -2.91 -0.02 1.69 16 35 H 0.13 2.23 8.05 -2.91 -0.02 2.20 16 36 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.45 8.10 -2.38 -0.02 1.43 16 39 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 40 H 0.42 9.88 8.44 -92.71 -0.78 9.10 16 41 H 0.17 9.22 5.92 -2.91 -0.02 9.21 16 42 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 44 H 0.10 1.43 7.81 -2.39 -0.02 1.41 16 45 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 Total: -1.00 -79.44 372.40 4.78 -74.66 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.25 Total: 36.62 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 6.19 Total: -20.39 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -2.67 Total: -99.93 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.01 Total: -31.82 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -79.44 4.78 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.300 kcal (2) G-P(sol) polarization free energy of solvation -79.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds