Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99576 * 2 1 4 4 C 1.38765 * 120.17557 * 0.02562 * 3 2 1 5 5 C 1.37828 * 119.71026 * 180.09545 * 4 3 2 6 6 C 1.38958 * 120.62955 * 0.02853 * 5 4 3 7 7 C 1.37704 * 119.76413 * 359.74137 * 6 5 4 8 8 C 1.38424 * 120.17367 * 179.97438 * 3 2 1 9 9 C 1.50647 * 122.55900 * 180.38476 * 7 6 5 10 10 C 1.52727 * 110.59392 * 342.21857 * 9 7 6 11 11 C 1.53329 * 108.38207 * 51.10681 * 10 9 7 12 12 H 1.09005 * 109.67693 * 49.87456 * 11 10 9 13 13 C 1.50698 * 109.68209 * 170.38707 * 11 10 9 14 14 O 1.21308 * 120.00033 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99992 * 179.97438 * 13 11 10 16 16 C 1.40596 * 119.99864 * 180.02562 * 15 13 11 17 17 C 1.40644 * 126.08566 * 0.02700 * 16 15 13 18 18 N 1.30907 * 108.38994 * 179.97438 * 17 16 15 19 19 N 1.40062 * 108.40601 * 359.97438 * 18 17 16 20 20 C 1.37326 * 126.07121 * 180.26814 * 19 18 17 21 21 H 1.08001 * 119.99997 * 179.69257 * 20 19 18 22 22 C 1.38984 * 119.99688 * 359.68921 * 20 19 18 23 23 N 1.31304 * 120.00221 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47175 * 90.00192 * 24 22 20 26 26 H 1.48496 * 109.46859 * 209.99862 * 24 22 20 27 27 H 1.48495 * 109.46859 * 329.99914 * 24 22 20 28 28 C 1.35679 * 126.07923 * 180.02562 * 16 15 13 29 29 C 1.50647 * 117.69428 * 179.40311 * 6 5 4 30 30 H 1.09005 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47486 * 299.99857 * 1 2 3 32 32 H 1.09001 * 109.47388 * 60.00267 * 1 2 3 33 33 H 1.08005 * 120.14032 * 0.07995 * 4 3 2 34 34 H 1.08006 * 119.68533 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.74636 * 0.02562 * 8 3 2 36 36 H 1.08994 * 109.25461 * 221.92647 * 9 7 6 37 37 H 1.09006 * 109.21964 * 102.48588 * 9 7 6 38 38 H 1.08994 * 109.68377 * 291.38561 * 10 9 7 39 39 H 1.09003 * 109.71508 * 170.84527 * 10 9 7 40 40 H 0.96991 * 119.99980 * 0.02562 * 15 13 11 41 41 H 1.08000 * 125.80397 * 359.95321 * 17 16 15 42 42 H 0.96994 * 119.99815 * 180.02562 * 23 22 20 43 43 H 1.08003 * 126.25065 * 359.97438 * 28 16 15 44 44 H 1.09003 * 109.25179 * 42.24939 * 29 6 5 45 45 H 1.09007 * 109.24908 * 282.83062 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 0.0005 5 6 1.9292 3.6000 -0.0015 6 6 3.3167 3.6768 -0.0046 7 6 4.0653 2.5210 -0.0003 8 6 3.4280 1.2877 0.0005 9 6 5.5717 2.5309 0.0051 10 6 6.1016 3.8952 -0.4313 11 6 5.4064 4.9746 0.4067 12 1 5.4686 4.7155 1.4637 13 6 6.0707 6.3066 0.1708 14 8 7.0093 6.3894 -0.5931 15 7 5.6213 7.4060 0.8079 16 6 6.2407 8.6487 0.5874 17 6 7.3321 8.8904 -0.2662 18 7 7.6269 10.1646 -0.2089 19 7 6.7389 10.7845 0.6793 20 6 6.7206 12.1184 1.0051 21 1 5.9857 12.4941 1.7016 22 6 7.6480 12.9848 0.4386 23 7 8.5412 12.5281 -0.4085 24 14 7.6236 14.7992 0.8823 25 1 8.4967 15.0324 2.0607 26 1 8.1208 15.5966 -0.2675 27 1 6.2342 15.2109 1.2064 28 6 5.8919 9.8282 1.1602 29 6 3.9420 5.0473 -0.0205 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.2148 2.3263 0.0023 34 1 1.3433 4.5073 -0.0006 35 1 4.0150 0.3812 0.0005 36 1 5.9387 1.7668 -0.6801 37 1 5.9284 2.3120 1.0117 38 1 5.8833 4.0531 -1.4874 39 1 7.1784 3.9407 -0.2683 40 1 4.8705 7.3398 1.4184 41 1 7.8406 8.1506 -0.8666 42 1 9.1886 13.1327 -0.8036 43 1 5.0896 9.9825 1.8665 44 1 3.3993 5.6979 0.6652 45 1 3.8816 5.4581 -1.0284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900437444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 23.369990 kcal Electronic energy + Delta-G solvation = -28177.214381 eV Core-core repulsion = 24161.315435 eV Total energy + Delta-G solvation = -4015.898946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79299 -39.94478 -39.10952 -38.09507 -35.21770 -34.19009 -33.21511 -32.67916 -30.31171 -29.96152 -29.54152 -27.82549 -27.09007 -24.97372 -24.11863 -23.00599 -22.46548 -21.04347 -20.47577 -19.44275 -19.24778 -17.93788 -17.50472 -16.83718 -16.38252 -16.04179 -15.59811 -15.39580 -15.27992 -14.96708 -14.52309 -14.32408 -13.97960 -13.84452 -13.78482 -13.52550 -13.25974 -13.10886 -12.86106 -12.70844 -12.40715 -12.22672 -12.04447 -11.67768 -11.40853 -11.33570 -11.24547 -11.18976 -10.96548 -10.90534 -10.88353 -10.52924 -10.51150 -10.11123 -9.13914 -9.06636 -8.97672 -8.77121 -8.25241 -8.03171 -6.66567 -6.53732 -4.20628 1.09592 1.20400 2.86029 2.96327 3.05721 3.05746 3.10949 3.48347 3.62970 3.70497 3.89912 4.39716 4.47192 4.51162 4.58525 4.72126 4.77900 4.78168 4.86443 4.93138 4.94909 4.97591 5.04238 5.09173 5.29908 5.32983 5.38896 5.41159 5.50879 5.65430 5.78104 5.81791 5.86168 6.07345 6.10627 6.19452 6.26252 6.29251 6.45570 6.49790 6.59450 6.93621 6.99294 7.12636 7.16501 7.27732 7.88400 8.22335 8.32668 8.66662 8.91316 9.40566 9.70074 10.42350 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.001889 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.693651 B =14815.302655 C =15543.000990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.082 4.082 10 C -0.098 4.098 11 C -0.101 4.101 12 H 0.096 0.904 13 C 0.503 3.497 14 O -0.534 6.534 15 N -0.625 5.625 16 C -0.059 4.059 17 C -0.034 4.034 18 N -0.261 5.261 19 N -0.144 5.144 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.046 3.954 23 N -0.771 5.771 24 Si 0.934 3.066 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.085 4.085 29 C -0.067 4.067 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.176 0.824 42 H 0.274 0.726 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 -20.536 3.026 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.033 4.033 8 C -0.173 4.173 9 C -0.119 4.119 10 C -0.136 4.136 11 C -0.123 4.123 12 H 0.114 0.886 13 C 0.289 3.711 14 O -0.411 6.411 15 N -0.267 5.267 16 C -0.165 4.165 17 C -0.209 4.209 18 N -0.092 5.092 19 N 0.089 4.911 20 C -0.456 4.456 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.397 5.397 24 Si 0.758 3.242 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.236 4.236 29 C -0.105 4.105 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.192 0.808 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.097 0.903 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.211 -19.664 1.899 23.766 hybrid contribution -1.497 0.239 0.936 1.781 sum -14.708 -19.425 2.835 24.530 Atomic orbital electron populations 1.23033 0.78494 1.03815 1.01353 1.86057 1.21293 1.27088 1.88948 1.18902 0.92337 0.84059 0.97087 1.21132 0.99874 0.92366 1.09388 1.20957 0.93856 0.97211 0.97590 1.19483 0.93068 0.94546 1.03558 1.19470 0.95766 0.91310 0.96793 1.20384 0.91293 0.98163 1.07464 1.20565 0.90220 0.98619 1.02526 1.21359 1.00727 0.91508 0.99994 1.21270 0.95354 0.93541 1.02143 0.88554 1.20285 0.84499 0.84961 0.81375 1.90593 1.28588 1.85428 1.36526 1.42565 1.33533 1.06133 1.44451 1.17297 1.03984 0.84441 1.10744 1.24108 0.98689 0.95010 1.03125 1.78246 1.13989 1.04839 1.12123 1.44539 1.17021 1.05674 1.23907 1.19855 1.18290 0.79408 1.28031 0.86680 1.25636 0.95013 1.01142 0.95316 1.70221 1.12551 1.35811 1.21133 0.85838 0.79298 0.80457 0.78611 1.19609 1.20100 1.18846 1.21261 1.03755 0.88762 1.09781 1.20387 0.93553 0.93599 1.02935 0.88350 0.92686 0.92692 0.85614 0.85679 0.85365 0.90129 0.90127 0.90861 0.89952 0.77148 0.80755 0.91499 0.83801 0.90328 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.04 10.50 -19.44 -0.20 -3.24 16 3 C 0.12 1.23 6.68 -39.32 -0.26 0.96 16 4 C -0.21 -1.90 9.04 -39.54 -0.36 -2.26 16 5 C -0.08 -0.73 9.60 -39.46 -0.38 -1.11 16 6 C -0.11 -1.09 5.74 -104.58 -0.60 -1.70 16 7 C -0.03 -0.34 5.74 -104.63 -0.60 -0.94 16 8 C -0.15 -1.56 9.55 -39.30 -0.38 -1.94 16 9 C -0.08 -0.76 5.67 -28.05 -0.16 -0.92 16 10 C -0.10 -1.13 4.71 -26.70 -0.13 -1.25 16 11 C -0.10 -1.21 2.55 -91.75 -0.23 -1.44 16 12 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 13 C 0.50 8.49 7.10 -10.99 -0.08 8.42 16 14 O -0.53 -11.23 13.01 5.53 0.07 -11.16 16 15 N -0.62 -10.86 5.38 -10.00 -0.05 -10.92 16 16 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 17 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 18 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 19 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 20 C -0.32 -8.61 10.25 -14.81 -0.15 -8.76 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 23 N -0.77 -21.69 11.81 55.49 0.66 -21.04 16 24 Si 0.93 19.01 29.55 -169.99 -5.02 13.99 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 27 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 28 C -0.08 -2.00 11.49 -16.39 -0.19 -2.18 16 29 C -0.07 -0.71 4.84 -28.05 -0.14 -0.84 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 32 H 0.05 0.26 7.67 -51.93 -0.40 -0.13 16 33 H 0.13 0.87 6.33 -52.48 -0.33 0.54 16 34 H 0.13 0.96 8.05 -52.48 -0.42 0.53 16 35 H 0.13 1.14 8.05 -52.49 -0.42 0.72 16 36 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 40 H 0.40 5.29 8.51 -40.82 -0.35 4.94 16 41 H 0.18 4.59 5.92 -52.49 -0.31 4.28 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.14 2.82 8.06 -52.48 -0.42 2.40 16 44 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 45 H 0.08 0.95 8.11 -51.92 -0.42 0.53 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -34.55 372.53 -8.12 -42.67 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.94 Total: 10.15 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.51 Total: -14.73 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.88 Total: -43.28 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.13 Total: -14.40 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.55 -8.12 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.037 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds