Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99576 * 2 1 4 4 C 1.38765 * 120.17557 * 0.02562 * 3 2 1 5 5 C 1.37828 * 119.71026 * 180.09545 * 4 3 2 6 6 C 1.38958 * 120.62955 * 0.02853 * 5 4 3 7 7 C 1.37704 * 119.76413 * 359.74137 * 6 5 4 8 8 C 1.38424 * 120.17367 * 179.97438 * 3 2 1 9 9 C 1.50647 * 122.55900 * 180.38476 * 7 6 5 10 10 C 1.52727 * 110.59392 * 342.21857 * 9 7 6 11 11 C 1.53329 * 108.38207 * 51.10681 * 10 9 7 12 12 H 1.09005 * 109.67693 * 49.87456 * 11 10 9 13 13 C 1.50698 * 109.68209 * 170.38707 * 11 10 9 14 14 O 1.21308 * 120.00033 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99992 * 179.97438 * 13 11 10 16 16 C 1.40596 * 119.99864 * 180.02562 * 15 13 11 17 17 C 1.40644 * 126.08566 * 0.02700 * 16 15 13 18 18 N 1.30907 * 108.38994 * 179.97438 * 17 16 15 19 19 N 1.40062 * 108.40601 * 359.97438 * 18 17 16 20 20 C 1.37326 * 126.07121 * 180.26814 * 19 18 17 21 21 H 1.08001 * 119.99997 * 179.69257 * 20 19 18 22 22 C 1.38984 * 119.99688 * 359.68921 * 20 19 18 23 23 N 1.31304 * 120.00221 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99980 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47175 * 90.00192 * 24 22 20 26 26 H 1.48496 * 109.46859 * 209.99862 * 24 22 20 27 27 H 1.48495 * 109.46859 * 329.99914 * 24 22 20 28 28 C 1.35679 * 126.07923 * 180.02562 * 16 15 13 29 29 C 1.50647 * 117.69428 * 179.40311 * 6 5 4 30 30 H 1.09005 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47486 * 299.99857 * 1 2 3 32 32 H 1.09001 * 109.47388 * 60.00267 * 1 2 3 33 33 H 1.08005 * 120.14032 * 0.07995 * 4 3 2 34 34 H 1.08006 * 119.68533 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.74636 * 0.02562 * 8 3 2 36 36 H 1.08994 * 109.25461 * 221.92647 * 9 7 6 37 37 H 1.09006 * 109.21964 * 102.48588 * 9 7 6 38 38 H 1.08994 * 109.68377 * 291.38561 * 10 9 7 39 39 H 1.09003 * 109.71508 * 170.84527 * 10 9 7 40 40 H 0.96991 * 119.99980 * 0.02562 * 15 13 11 41 41 H 1.08000 * 125.80397 * 359.95321 * 17 16 15 42 42 H 0.96994 * 119.99815 * 180.02562 * 23 22 20 43 43 H 1.08003 * 126.25065 * 359.97438 * 28 16 15 44 44 H 1.09003 * 109.25179 * 42.24939 * 29 6 5 45 45 H 1.09007 * 109.24908 * 282.83062 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 0.0005 5 6 1.9292 3.6000 -0.0015 6 6 3.3167 3.6768 -0.0046 7 6 4.0653 2.5210 -0.0003 8 6 3.4280 1.2877 0.0005 9 6 5.5717 2.5309 0.0051 10 6 6.1016 3.8952 -0.4313 11 6 5.4064 4.9746 0.4067 12 1 5.4686 4.7155 1.4637 13 6 6.0707 6.3066 0.1708 14 8 7.0093 6.3894 -0.5931 15 7 5.6213 7.4060 0.8079 16 6 6.2407 8.6487 0.5874 17 6 7.3321 8.8904 -0.2662 18 7 7.6269 10.1646 -0.2089 19 7 6.7389 10.7845 0.6793 20 6 6.7206 12.1184 1.0051 21 1 5.9857 12.4941 1.7016 22 6 7.6480 12.9848 0.4386 23 7 8.5412 12.5281 -0.4085 24 14 7.6236 14.7992 0.8823 25 1 8.4967 15.0324 2.0607 26 1 8.1208 15.5966 -0.2675 27 1 6.2342 15.2109 1.2064 28 6 5.8919 9.8282 1.1602 29 6 3.9420 5.0473 -0.0205 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.2148 2.3263 0.0023 34 1 1.3433 4.5073 -0.0006 35 1 4.0150 0.3812 0.0005 36 1 5.9387 1.7668 -0.6801 37 1 5.9284 2.3120 1.0117 38 1 5.8833 4.0531 -1.4874 39 1 7.1784 3.9407 -0.2683 40 1 4.8705 7.3398 1.4184 41 1 7.8406 8.1506 -0.8666 42 1 9.1886 13.1327 -0.8036 43 1 5.0896 9.9825 1.8665 44 1 3.3993 5.6979 0.6652 45 1 3.8816 5.4581 -1.0284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900437444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 1.749036 kcal Electronic energy + Delta-G solvation = -28178.151936 eV Core-core repulsion = 24161.315435 eV Total energy + Delta-G solvation = -4016.836501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.85204 -41.34669 -40.42438 -39.10519 -36.16119 -35.83902 -34.95287 -33.53963 -32.22128 -30.88810 -30.37109 -29.38542 -27.83894 -26.77075 -25.08099 -23.99495 -23.18286 -22.81284 -21.82515 -21.16420 -20.30402 -19.28424 -18.58547 -18.07334 -17.39422 -17.18608 -16.84766 -16.61617 -16.52615 -15.94846 -15.70675 -15.60196 -15.24776 -14.98610 -14.85417 -14.69520 -14.49236 -14.42865 -14.06421 -13.58550 -13.46966 -13.27926 -13.10659 -12.92813 -12.87305 -12.81724 -12.72786 -12.15178 -12.08212 -11.98943 -11.82129 -11.79245 -11.58129 -11.32906 -10.98543 -10.80534 -10.51964 -10.07937 -9.67950 -8.96517 -8.49289 -8.45476 -6.22461 0.39578 0.47759 1.24316 1.40390 1.55422 1.58477 1.89534 2.07734 2.34237 2.40744 2.55759 2.77196 2.94232 3.10587 3.58948 3.68922 3.90414 3.93981 4.06818 4.12701 4.23972 4.31910 4.37227 4.41728 4.46477 4.51988 4.59257 4.62067 4.62983 4.71907 4.75919 4.90162 4.97575 5.02227 5.04606 5.12556 5.14272 5.21460 5.31747 5.35419 5.39779 5.46644 5.53597 5.72240 5.88824 5.98074 6.34858 6.49617 6.76204 6.81395 7.44805 7.50556 7.71410 8.54046 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.001889 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.693651 B =14815.302655 C =15543.000990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.041 4.041 8 C -0.168 4.168 9 C -0.074 4.074 10 C -0.097 4.097 11 C -0.087 4.087 12 H 0.123 0.877 13 C 0.502 3.498 14 O -0.578 6.578 15 N -0.616 5.616 16 C -0.043 4.043 17 C -0.061 4.061 18 N -0.312 5.312 19 N -0.170 5.170 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.008 4.008 23 N -0.826 5.826 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.244 1.244 28 C -0.081 4.081 29 C -0.061 4.061 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.419 0.581 41 H 0.166 0.834 42 H 0.276 0.724 43 H 0.188 0.812 44 H 0.100 0.900 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 -21.004 4.974 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.041 4.041 8 C -0.186 4.186 9 C -0.111 4.111 10 C -0.135 4.135 11 C -0.108 4.108 12 H 0.140 0.860 13 C 0.291 3.709 14 O -0.457 6.457 15 N -0.260 5.260 16 C -0.149 4.149 17 C -0.237 4.237 18 N -0.144 5.144 19 N 0.061 4.939 20 C -0.485 4.485 21 H 0.158 0.842 22 C -0.219 4.219 23 N -0.454 5.454 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.167 1.167 28 C -0.231 4.231 29 C -0.098 4.098 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.183 0.817 42 H 0.085 0.915 43 H 0.205 0.795 44 H 0.118 0.882 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.187 -20.181 3.877 26.159 hybrid contribution -0.680 0.168 0.312 0.767 sum -16.867 -20.013 4.189 26.505 Atomic orbital electron populations 1.23310 0.76598 1.05424 1.02177 1.86036 1.23343 1.26999 1.88856 1.19107 0.92601 0.84714 0.96957 1.21387 1.01014 0.91891 1.08673 1.21188 0.93628 0.98130 0.96925 1.19500 0.93663 0.94132 1.04598 1.19562 0.96030 0.91488 0.97022 1.20529 0.91789 0.98405 1.07903 1.20513 0.89884 0.97142 1.03567 1.21321 1.00060 0.92975 0.99143 1.21252 0.95861 0.90017 1.03719 0.85955 1.21270 0.83639 0.86236 0.79788 1.90585 1.30660 1.86220 1.38247 1.42530 1.34033 1.04320 1.45161 1.17372 1.02423 0.86553 1.08566 1.24154 1.00475 0.94479 1.04548 1.78141 1.16043 1.06160 1.14042 1.44834 1.17797 1.06696 1.24549 1.20612 1.19420 0.79550 1.28943 0.84151 1.26887 0.93961 1.06524 0.94544 1.70409 1.13972 1.37888 1.23173 0.84595 0.80265 0.73256 0.78100 1.18911 1.20295 1.16660 1.22014 1.03645 0.87975 1.09460 1.20333 0.92416 0.94431 1.02648 0.86523 0.91704 0.91930 0.83540 0.83882 0.84774 0.89098 0.88659 0.92463 0.91251 0.74379 0.81721 0.91478 0.79484 0.88194 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 113.37 1.11 1.28 16 2 O -0.34 -5.85 10.50 -92.47 -0.97 -6.82 16 3 C 0.11 2.05 6.68 22.44 0.15 2.20 16 4 C -0.21 -3.32 9.04 22.30 0.20 -3.12 16 5 C -0.08 -1.31 9.60 22.35 0.21 -1.09 16 6 C -0.12 -2.19 5.74 -19.83 -0.11 -2.30 16 7 C -0.04 -0.76 5.74 -19.87 -0.11 -0.88 16 8 C -0.17 -3.14 9.55 22.45 0.21 -2.93 16 9 C -0.07 -1.26 5.67 29.74 0.17 -1.09 16 10 C -0.10 -2.18 4.71 30.61 0.14 -2.03 16 11 C -0.09 -1.93 2.55 -11.52 -0.03 -1.96 16 12 H 0.12 2.16 8.10 -2.38 -0.02 2.14 16 13 C 0.50 16.68 7.10 87.66 0.62 17.30 16 14 O -0.58 -24.99 13.01 -3.12 -0.04 -25.03 16 15 N -0.62 -20.46 5.38 -303.93 -1.64 -22.10 16 16 C -0.04 -1.96 6.90 37.73 0.26 -1.70 16 17 C -0.06 -3.38 10.85 85.42 0.93 -2.45 16 18 N -0.31 -19.04 10.40 -56.47 -0.59 -19.62 16 19 N -0.17 -9.47 3.74 -190.01 -0.71 -10.18 16 20 C -0.35 -18.84 10.25 84.01 0.86 -17.98 16 21 H 0.14 6.44 7.83 -2.91 -0.02 6.41 16 22 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 23 N -0.83 -48.28 11.81 21.66 0.26 -48.02 16 24 Si 1.02 38.81 29.55 68.60 2.03 40.83 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 27 H -0.24 -8.36 7.11 99.48 0.71 -7.66 16 28 C -0.08 -3.71 11.49 83.37 0.96 -2.75 16 29 C -0.06 -1.15 4.84 29.74 0.14 -1.00 16 30 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.44 7.67 -2.39 -0.02 0.43 16 32 H 0.06 0.45 7.67 -2.39 -0.02 0.44 16 33 H 0.15 1.58 6.33 -2.91 -0.02 1.57 16 34 H 0.14 1.72 8.05 -2.91 -0.02 1.70 16 35 H 0.13 2.23 8.05 -2.91 -0.02 2.20 16 36 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.07 1.73 7.82 -2.39 -0.02 1.72 16 40 H 0.42 9.90 8.51 -92.72 -0.79 9.11 16 41 H 0.17 9.23 5.92 -2.91 -0.02 9.21 16 42 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 44 H 0.10 1.44 7.87 -2.39 -0.02 1.42 16 45 H 0.07 1.49 8.11 -2.38 -0.02 1.47 16 Total: -1.00 -79.45 372.53 4.77 -74.68 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.24 Total: 36.71 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 6.19 Total: -20.45 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -2.68 Total: -99.92 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.01 Total: -31.85 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -79.45 4.77 -74.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900437444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.432 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds