Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99538 * 2 1 4 4 C 1.53006 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46856 * 65.00133 * 4 3 2 6 6 C 1.46498 * 120.00399 * 275.00051 * 5 4 3 7 7 C 1.50703 * 109.47003 * 275.00408 * 6 5 4 8 8 H 1.07996 * 119.99990 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99890 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00223 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00026 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47050 * 90.00454 * 11 9 7 13 13 H 1.48502 * 109.47219 * 210.00362 * 11 9 7 14 14 H 1.48495 * 109.47491 * 330.00483 * 11 9 7 15 15 S 1.65602 * 119.99747 * 95.00116 * 5 4 3 16 16 O 1.42092 * 104.27876 * 333.92906 * 15 5 4 17 17 O 1.42098 * 104.27847 * 206.06636 * 15 5 4 18 18 C 1.81408 * 104.44772 * 90.00088 * 15 5 4 19 19 C 1.52997 * 109.46973 * 180.02562 * 18 15 5 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 15 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08998 * 109.46994 * 59.99959 * 1 2 3 28 28 H 1.09002 * 109.46607 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47032 * 299.99643 * 1 2 3 30 30 H 1.09004 * 109.46778 * 60.00315 * 3 2 1 31 31 H 1.08995 * 109.47640 * 300.00531 * 3 2 1 32 32 H 1.09007 * 109.46799 * 305.00080 * 4 3 2 33 33 H 1.09002 * 109.46920 * 185.00721 * 4 3 2 34 34 H 1.08997 * 109.46808 * 35.00041 * 6 5 4 35 35 H 1.08997 * 109.47324 * 155.00263 * 6 5 4 36 36 H 0.96996 * 119.99921 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.47499 * 60.00005 * 18 15 5 38 38 H 1.08999 * 109.46513 * 299.99674 * 18 15 5 39 39 H 1.08995 * 109.47671 * 59.99598 * 19 18 15 40 40 H 1.09004 * 109.46984 * 299.99614 * 19 18 15 41 41 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 42 42 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 43 43 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 47 47 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2527 6 6 4.0004 -0.8947 -1.3783 7 6 5.2994 -1.4243 -0.8276 8 1 6.0333 -0.7420 -0.4249 9 6 5.5514 -2.7797 -0.8390 10 7 6.6853 -3.2419 -0.3590 11 14 4.2824 -3.9599 -1.5364 12 1 4.5311 -4.1533 -2.9876 13 1 4.3851 -5.2665 -0.8381 14 1 2.9222 -3.3981 -1.3378 15 16 4.4452 1.5134 -2.5262 16 8 3.7483 2.7357 -2.3283 17 8 4.2017 0.7083 -3.6715 18 6 6.2271 1.7497 -2.2816 19 6 6.7852 2.6216 -3.4082 20 6 8.2879 2.8215 -3.2016 21 6 8.8379 3.6799 -4.3116 22 6 8.8703 5.0547 -4.1708 23 6 9.3752 5.8419 -5.1887 24 6 9.8483 5.2544 -6.3471 25 6 9.8110 3.8800 -6.4900 26 6 9.3103 3.0924 -5.4702 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1767 0.0891 34 1 3.1679 -1.3216 -0.8191 35 1 3.9118 -1.1706 -2.4291 36 1 6.8624 -4.1955 -0.3667 37 1 6.7267 0.7811 -2.2900 38 1 6.4004 2.2398 -1.3236 39 1 6.2857 3.5903 -3.3995 40 1 6.6119 2.1320 -4.3665 41 1 8.7880 1.8530 -3.2101 42 1 8.4610 3.3114 -2.2434 43 1 8.5010 5.5137 -3.2655 44 1 9.4001 6.9160 -5.0789 45 1 10.2431 5.8695 -7.1422 46 1 10.1765 3.4212 -7.3968 47 1 9.2857 2.0183 -5.5799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914061908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = -100.529221 kcal Electronic energy + Delta-G solvation = -27929.456973 eV Core-core repulsion = 24011.336555 eV Total energy + Delta-G solvation = -3918.120418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.40887 -37.81170 -36.60369 -35.57032 -35.35151 -35.18525 -32.50911 -31.25870 -30.99334 -29.77706 -27.19884 -26.72152 -25.77550 -22.72070 -22.67751 -22.54519 -21.49573 -20.83354 -18.25291 -17.19385 -16.98823 -16.84400 -16.14728 -15.94561 -15.82288 -15.60715 -15.25705 -15.07851 -14.68720 -14.41478 -14.10108 -13.73041 -13.63140 -13.48964 -13.20391 -12.55281 -12.44758 -12.33584 -12.21908 -12.15671 -12.03850 -11.89128 -11.79899 -11.56852 -11.30620 -11.21018 -11.15986 -11.07360 -10.88969 -10.73992 -10.71740 -10.32562 -10.11093 -10.10094 -9.55509 -9.34005 -9.03232 -8.79086 -8.59430 -8.01101 -6.12673 -4.12517 0.82461 1.25169 1.28987 3.23356 3.33883 3.40256 3.46103 3.67018 4.10437 4.29201 4.41604 4.58703 4.64927 4.74339 4.87685 4.97728 5.00417 5.10294 5.17740 5.23314 5.31540 5.35691 5.38678 5.41700 5.49467 5.56204 5.60706 5.65631 5.66711 5.76739 5.83910 5.85825 5.89480 6.01281 6.03950 6.20357 6.26911 6.35604 6.39543 6.45843 6.56658 6.90186 7.08281 7.26330 7.39597 7.52920 7.64025 8.43560 8.87839 9.49531 10.99608 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003229 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.593675 B = 8670.122871 C =10249.508468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.134 3.866 5 N -0.973 5.973 6 C 0.212 3.788 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.897 5.897 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.258 1.258 15 S 2.606 3.394 16 O -0.978 6.978 17 O -0.957 6.957 18 C -0.631 4.631 19 C -0.103 4.103 20 C -0.075 4.075 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.265 0.735 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 15.199 -4.538 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.810 5.810 6 C 0.089 3.911 7 C -0.584 4.584 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.535 5.535 11 Si 0.694 3.306 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.182 1.182 15 S 2.700 3.300 16 O -0.968 6.968 17 O -0.948 6.948 18 C -0.760 4.760 19 C -0.142 4.142 20 C -0.113 4.113 21 C -0.080 4.080 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.023 15.157 -5.171 16.015 hybrid contribution -0.066 -0.662 0.155 0.683 sum -0.043 14.495 -5.016 15.339 Atomic orbital electron populations 1.22705 0.82292 1.02354 0.99314 1.88051 1.18538 1.27464 1.95219 1.23118 0.95290 0.84970 1.00162 1.21132 0.91475 0.97974 0.88698 1.57084 1.78596 1.18046 1.27304 1.19689 0.98746 0.74320 0.98326 1.21511 1.01998 0.93232 1.41621 0.90398 1.24823 0.95155 0.98168 0.94502 1.69895 1.23589 1.14133 1.45874 0.86948 0.83205 0.80678 0.79736 1.19845 1.21191 1.18249 1.04932 0.77424 0.73341 0.74298 1.93514 1.70378 1.46788 1.86163 1.93550 1.84093 1.68337 1.48801 1.30740 1.27801 1.10365 1.07058 1.21261 0.96500 0.99234 0.97204 1.20606 0.94486 0.99815 0.96431 1.20006 0.98096 0.94104 0.95789 1.21109 1.00010 0.93245 0.99298 1.21135 0.99067 0.99706 0.93956 1.21132 1.00669 0.95027 0.97860 1.21163 0.99742 0.93942 0.98858 1.21174 0.98709 1.00275 0.93299 0.94522 0.89993 0.94602 0.93006 0.92871 0.88866 0.89893 0.92624 0.94035 0.92564 0.83401 0.85517 0.90808 0.90427 0.89977 0.90441 0.85978 0.86205 0.86332 0.86111 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.60 9.02 -35.23 -0.32 -6.91 16 3 C 0.04 0.68 6.28 37.16 0.23 0.91 16 4 C 0.13 2.23 5.70 -4.04 -0.02 2.20 16 5 N -0.97 -19.27 2.69 -115.66 -0.31 -19.58 16 6 C 0.21 5.01 4.32 -5.19 -0.02 4.99 16 7 C -0.54 -14.36 9.94 -34.44 -0.34 -14.70 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -26.24 13.96 55.43 0.77 -25.46 16 11 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 15 S 2.61 48.27 5.37 -107.50 -0.58 47.69 16 16 O -0.98 -18.33 16.76 -57.54 -0.96 -19.29 16 17 O -0.96 -21.03 16.53 -57.54 -0.95 -21.98 16 18 C -0.63 -9.56 6.18 37.16 0.23 -9.33 16 19 C -0.10 -1.39 5.20 -26.74 -0.14 -1.52 16 20 C -0.08 -0.89 5.34 -27.88 -0.15 -1.04 16 21 C -0.08 -0.94 5.13 -104.62 -0.54 -1.47 16 22 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.86 7.91 -51.93 -0.41 0.45 16 32 H 0.09 1.59 8.11 -51.92 -0.42 1.17 16 33 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 34 H 0.06 1.35 5.66 -51.93 -0.29 1.05 16 35 H 0.04 1.03 6.24 -51.93 -0.32 0.71 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.15 2.46 8.14 -51.93 -0.42 2.03 16 38 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 42 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -33.64 400.16 -10.45 -44.09 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.77 Total: 3.51 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.70 Total: -24.60 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.46 Total: -45.04 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.23 Total: -48.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.58 Total: 47.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.64 -10.45 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.435 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds