Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.34512 * 125.78762 * 89.99768 * 4 3 2 6 6 C 1.41385 * 106.83926 * 179.76997 * 5 4 3 7 7 C 1.34515 * 106.83992 * 0.23220 * 6 5 4 8 8 C 1.50704 * 125.79099 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.50605 * 339.91196 * 8 7 6 10 10 C 1.53100 * 109.50490 * 99.99503 * 8 7 6 11 11 O 1.43013 * 109.25493 * 176.78288 * 10 8 7 12 12 C 1.43019 * 113.74044 * 301.33027 * 11 10 8 13 13 C 1.53101 * 109.25492 * 58.67426 * 12 11 10 14 14 N 1.47009 * 109.50534 * 219.77761 * 8 7 6 15 15 C 1.46903 * 111.00021 * 57.67666 * 14 8 7 16 16 C 1.53000 * 109.47355 * 169.99468 * 15 14 8 17 17 C 1.52994 * 109.47117 * 179.97438 * 16 15 14 18 18 S 1.81004 * 109.47049 * 180.02562 * 17 16 15 19 19 C 1.76196 * 100.00119 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00177 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99962 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00350 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46873 * 60.00184 * 23 21 19 25 25 H 1.48502 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47253 * 299.99833 * 23 21 19 27 27 O 1.34305 * 125.78789 * 270.15980 * 4 3 2 28 28 H 1.09001 * 109.46493 * 299.99440 * 1 2 3 29 29 H 1.08998 * 109.47556 * 59.99623 * 1 2 3 30 30 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46828 * 60.00109 * 3 2 1 32 32 H 1.09008 * 109.46940 * 300.00413 * 3 2 1 33 33 H 1.08002 * 126.58498 * 0.04167 * 5 4 3 34 34 H 1.08001 * 126.58081 * 180.18948 * 6 5 4 35 35 H 1.08992 * 109.51039 * 296.71935 * 10 8 7 36 36 H 1.09004 * 109.50397 * 56.81057 * 10 8 7 37 37 H 1.08998 * 109.50499 * 178.60453 * 12 11 10 38 38 H 1.08997 * 109.50630 * 298.69265 * 12 11 10 39 39 H 1.08996 * 109.50682 * 63.08492 * 13 12 11 40 40 H 1.09000 * 109.50256 * 183.17481 * 13 12 11 41 41 H 1.09000 * 109.46732 * 289.99664 * 15 14 8 42 42 H 1.08996 * 109.46999 * 49.99517 * 15 14 8 43 43 H 1.09000 * 109.47011 * 300.00228 * 16 15 14 44 44 H 1.09007 * 109.46608 * 60.00015 * 16 15 14 45 45 H 1.09000 * 109.47673 * 300.00198 * 17 16 15 46 46 H 1.08999 * 109.47274 * 60.00518 * 17 16 15 47 47 H 0.97003 * 120.00387 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2963 1.1245 -1.0921 6 6 5.6299 1.0243 -0.6336 7 6 5.5810 1.0258 0.7107 8 6 6.7671 0.9353 1.6359 9 1 7.6180 0.5184 1.0971 10 6 7.1224 2.3330 2.1497 11 8 8.2000 2.2320 3.0846 12 6 7.9106 1.3964 4.2087 13 6 7.5633 -0.0108 3.7156 14 7 6.4350 0.0693 2.7765 15 6 6.0325 -1.2685 2.3221 16 6 5.9369 -2.2086 3.5254 17 6 5.5171 -3.6016 3.0522 18 16 5.4033 -4.7135 4.4759 19 6 4.9183 -6.2006 3.6647 20 1 4.7835 -6.2120 2.5933 21 6 4.7084 -7.3571 4.4029 22 7 4.8722 -7.3431 5.7088 23 14 4.1935 -8.9335 3.5430 24 1 5.2334 -9.3214 2.5563 25 1 4.0360 -10.0163 4.5470 26 1 2.9026 -8.7161 2.8421 27 8 4.2957 1.1212 1.0885 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9698 1.1511 -2.1213 34 1 6.5176 0.9584 -1.2452 35 1 7.4245 2.9626 1.3129 36 1 6.2538 2.7720 2.6406 37 1 8.7827 1.3486 4.8608 38 1 7.0657 1.8083 4.7604 39 1 8.4272 -0.4431 3.2107 40 1 7.2873 -0.6361 4.5646 41 1 5.0617 -1.2082 1.8301 42 1 6.7726 -1.6515 1.6196 43 1 6.9077 -2.2688 4.0174 44 1 5.1967 -1.8254 4.2279 45 1 4.5462 -3.5411 2.5605 46 1 6.2569 -3.9850 2.3496 47 1 4.7258 -8.1515 6.2247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932330123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = -69.895708 kcal Electronic energy + Delta-G solvation = -27621.592725 eV Core-core repulsion = 23704.800675 eV Total energy + Delta-G solvation = -3916.792050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81319 -39.83448 -38.07893 -36.53610 -33.60063 -33.07743 -32.41346 -32.00496 -30.39168 -28.15961 -27.05268 -25.64721 -25.63814 -24.38794 -23.66854 -21.93794 -21.41626 -20.51112 -19.95345 -17.62123 -17.31512 -17.03334 -16.50343 -16.45062 -16.05563 -15.62015 -15.47996 -15.42527 -15.15915 -14.78602 -14.52313 -14.15095 -14.11909 -13.76474 -13.63310 -12.98931 -12.94487 -12.90525 -12.51927 -12.27289 -12.10297 -11.97559 -11.78262 -11.68700 -11.54722 -11.12887 -11.02508 -10.89052 -10.76928 -10.61102 -10.29581 -10.10896 -10.04864 -9.93728 -9.51135 -9.02774 -8.57802 -8.50273 -8.28736 -6.50266 -6.20372 -3.90391 1.40091 2.32791 2.62204 3.22912 3.25218 3.29310 3.46630 3.57960 3.71333 3.75957 4.24832 4.36550 4.55909 4.61766 4.77560 4.81071 4.84707 4.92408 4.95721 5.04588 5.05739 5.09501 5.13365 5.15647 5.32181 5.33882 5.41478 5.45249 5.46962 5.55007 5.59117 5.67124 5.71037 5.75493 5.76741 5.83370 5.93342 6.15091 6.27705 6.31982 6.58488 6.69661 6.77073 6.79655 6.86401 6.90696 7.09169 7.63000 8.39197 9.25915 10.87839 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003093 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.034798 B = 9049.557052 C =11641.276385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.144 3.856 4 C -0.020 4.020 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.014 3.986 8 C 0.128 3.872 9 H 0.080 0.920 10 C 0.073 3.927 11 O -0.382 6.382 12 C 0.060 3.940 13 C 0.010 3.990 14 N -0.528 5.528 15 C 0.061 3.939 16 C -0.098 4.098 17 C -0.112 4.112 18 S -0.131 6.131 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.871 5.871 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.147 6.147 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 22.975 -11.445 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.067 3.933 4 C -0.070 4.070 5 C -0.202 4.202 6 C -0.229 4.229 7 C -0.038 4.038 8 C 0.019 3.981 9 H 0.098 0.902 10 C -0.004 4.004 11 O -0.300 6.300 12 C -0.016 4.016 13 C -0.117 4.117 14 N -0.253 5.253 15 C -0.067 4.067 16 C -0.137 4.137 17 C -0.261 4.261 18 S 0.097 5.903 19 C -0.664 4.664 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.506 5.506 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 O -0.043 6.043 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.782 23.201 -9.624 25.130 hybrid contribution -0.339 -1.743 -2.535 3.095 sum -1.121 21.458 -12.159 24.689 Atomic orbital electron populations 1.22806 0.80134 1.03507 1.00051 1.88040 1.20198 1.26490 1.95434 1.20634 0.84561 0.86011 1.02060 1.21921 0.92639 1.07863 0.84595 1.21553 0.92551 1.06782 0.99343 1.21565 0.98388 1.09347 0.93560 1.22018 0.83097 1.05133 0.93538 1.20886 0.90526 0.96482 0.90186 0.90248 1.22670 0.90923 0.93809 0.93013 1.87998 1.39055 1.68695 1.34267 1.22784 1.01742 0.88986 0.88126 1.22977 0.92340 0.98417 0.97993 1.62347 1.36116 1.12858 1.14028 1.22250 1.00673 0.86306 0.97477 1.21411 1.02341 0.93051 0.96883 1.23213 1.02494 0.97406 1.02984 1.84558 1.90139 1.05598 1.09997 1.22653 1.53304 0.94936 0.95542 0.91033 1.24999 0.94976 0.98794 0.94932 1.70009 1.46445 1.28958 1.05204 0.86236 0.79211 0.81151 0.79015 1.19951 1.20806 1.19910 1.84062 1.16072 1.69894 1.34224 0.93658 0.93888 0.89013 0.91409 0.90133 0.83331 0.83302 0.88107 0.91732 0.88052 0.91931 0.93535 0.87811 0.90340 0.94716 0.91368 0.90641 0.92018 0.92352 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.60 10.69 -35.23 -0.38 -4.98 16 3 C 0.14 1.38 6.47 36.01 0.23 1.61 16 4 C -0.02 -0.24 6.95 -35.62 -0.25 -0.48 16 5 C -0.18 -2.00 10.81 -39.70 -0.43 -2.43 16 6 C -0.21 -2.30 10.80 -39.70 -0.43 -2.73 16 7 C 0.01 0.17 4.84 -35.62 -0.17 0.00 16 8 C 0.13 1.48 2.40 -68.75 -0.17 1.31 16 9 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 10 C 0.07 0.75 6.27 37.21 0.23 0.98 16 11 O -0.38 -4.29 10.83 -35.23 -0.38 -4.67 16 12 C 0.06 0.61 7.01 37.21 0.26 0.87 16 13 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 14 N -0.53 -6.93 4.67 -227.73 -1.06 -7.99 16 15 C 0.06 0.92 4.73 -3.82 -0.02 0.91 16 16 C -0.10 -1.68 4.49 -26.73 -0.12 -1.80 16 17 C -0.11 -2.36 5.67 37.15 0.21 -2.15 16 18 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 19 C -0.52 -15.13 9.50 30.94 0.29 -14.84 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 O -0.15 -2.04 10.26 5.70 0.06 -1.98 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 1.24 6.05 -51.93 -0.31 0.93 16 41 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 42 H 0.03 0.51 8.08 -51.93 -0.42 0.10 16 43 H 0.07 1.12 6.28 -51.93 -0.33 0.79 16 44 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 45 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 46 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -34.07 397.09 -9.46 -43.53 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.74 Total: -0.05 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 0.65 Total: -15.30 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: -0.33 Total: -33.58 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.70 Total: -11.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.07 -9.46 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932330123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.367 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds