Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.34512 * 125.78762 * 89.99768 * 4 3 2 6 6 C 1.41385 * 106.83926 * 179.76997 * 5 4 3 7 7 C 1.34515 * 106.83992 * 0.23220 * 6 5 4 8 8 C 1.50704 * 125.79099 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.50605 * 339.91196 * 8 7 6 10 10 C 1.53100 * 109.50490 * 99.99503 * 8 7 6 11 11 O 1.43013 * 109.25493 * 176.78288 * 10 8 7 12 12 C 1.43019 * 113.74044 * 301.33027 * 11 10 8 13 13 C 1.53101 * 109.25492 * 58.67426 * 12 11 10 14 14 N 1.47009 * 109.50534 * 219.77761 * 8 7 6 15 15 C 1.46903 * 111.00021 * 57.67666 * 14 8 7 16 16 C 1.53000 * 109.47355 * 169.99468 * 15 14 8 17 17 C 1.52994 * 109.47117 * 179.97438 * 16 15 14 18 18 S 1.81004 * 109.47049 * 180.02562 * 17 16 15 19 19 C 1.76196 * 100.00119 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00177 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99962 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00350 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46873 * 60.00184 * 23 21 19 25 25 H 1.48502 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47253 * 299.99833 * 23 21 19 27 27 O 1.34305 * 125.78789 * 270.15980 * 4 3 2 28 28 H 1.09001 * 109.46493 * 299.99440 * 1 2 3 29 29 H 1.08998 * 109.47556 * 59.99623 * 1 2 3 30 30 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46828 * 60.00109 * 3 2 1 32 32 H 1.09008 * 109.46940 * 300.00413 * 3 2 1 33 33 H 1.08002 * 126.58498 * 0.04167 * 5 4 3 34 34 H 1.08001 * 126.58081 * 180.18948 * 6 5 4 35 35 H 1.08992 * 109.51039 * 296.71935 * 10 8 7 36 36 H 1.09004 * 109.50397 * 56.81057 * 10 8 7 37 37 H 1.08998 * 109.50499 * 178.60453 * 12 11 10 38 38 H 1.08997 * 109.50630 * 298.69265 * 12 11 10 39 39 H 1.08996 * 109.50682 * 63.08492 * 13 12 11 40 40 H 1.09000 * 109.50256 * 183.17481 * 13 12 11 41 41 H 1.09000 * 109.46732 * 289.99664 * 15 14 8 42 42 H 1.08996 * 109.46999 * 49.99517 * 15 14 8 43 43 H 1.09000 * 109.47011 * 300.00228 * 16 15 14 44 44 H 1.09007 * 109.46608 * 60.00015 * 16 15 14 45 45 H 1.09000 * 109.47673 * 300.00198 * 17 16 15 46 46 H 1.08999 * 109.47274 * 60.00518 * 17 16 15 47 47 H 0.97003 * 120.00387 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2963 1.1245 -1.0921 6 6 5.6299 1.0243 -0.6336 7 6 5.5810 1.0258 0.7107 8 6 6.7671 0.9353 1.6359 9 1 7.6180 0.5184 1.0971 10 6 7.1224 2.3330 2.1497 11 8 8.2000 2.2320 3.0846 12 6 7.9106 1.3964 4.2087 13 6 7.5633 -0.0108 3.7156 14 7 6.4350 0.0693 2.7765 15 6 6.0325 -1.2685 2.3221 16 6 5.9369 -2.2086 3.5254 17 6 5.5171 -3.6016 3.0522 18 16 5.4033 -4.7135 4.4759 19 6 4.9183 -6.2006 3.6647 20 1 4.7835 -6.2120 2.5933 21 6 4.7084 -7.3571 4.4029 22 7 4.8722 -7.3431 5.7088 23 14 4.1935 -8.9335 3.5430 24 1 5.2334 -9.3214 2.5563 25 1 4.0360 -10.0163 4.5470 26 1 2.9026 -8.7161 2.8421 27 8 4.2957 1.1212 1.0885 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9698 1.1511 -2.1213 34 1 6.5176 0.9584 -1.2452 35 1 7.4245 2.9626 1.3129 36 1 6.2538 2.7720 2.6406 37 1 8.7827 1.3486 4.8608 38 1 7.0657 1.8083 4.7604 39 1 8.4272 -0.4431 3.2107 40 1 7.2873 -0.6361 4.5646 41 1 5.0617 -1.2082 1.8301 42 1 6.7726 -1.6515 1.6196 43 1 6.9077 -2.2688 4.0174 44 1 5.1967 -1.8254 4.2279 45 1 4.5462 -3.5411 2.5605 46 1 6.2569 -3.9850 2.3496 47 1 4.7258 -8.1515 6.2247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932330123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -92.851939 kcal Electronic energy + Delta-G solvation = -27622.588182 eV Core-core repulsion = 23704.800675 eV Total energy + Delta-G solvation = -3917.787506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68501 -40.75795 -38.83769 -37.58998 -34.72223 -34.58478 -34.01480 -33.08962 -31.17820 -29.26395 -27.87452 -27.73884 -26.39342 -25.72019 -24.55282 -22.80120 -22.56711 -21.59852 -20.87359 -19.59128 -18.37302 -17.85809 -17.39429 -17.30154 -16.91417 -16.80205 -16.62951 -16.48751 -16.33044 -16.14633 -16.08631 -15.38186 -15.04546 -14.96730 -14.67784 -14.55829 -13.79913 -13.70879 -13.57572 -13.50420 -13.34700 -13.23252 -12.93565 -12.87969 -12.80357 -12.52012 -12.49031 -12.36483 -12.23605 -11.82789 -11.64468 -11.38836 -11.15579 -10.96416 -10.78594 -10.76181 -10.37083 -9.53355 -9.43140 -8.69335 -8.39269 -6.15969 0.53601 1.29175 1.39283 1.45538 1.50428 1.68694 1.81791 2.25632 2.58969 2.79277 2.94843 3.03698 3.28500 3.53862 3.69404 3.83236 3.86712 3.91244 3.97380 4.06400 4.11957 4.15295 4.21833 4.24432 4.30571 4.38321 4.39451 4.47857 4.54361 4.56467 4.66737 4.67772 4.72642 4.77064 4.85249 4.88282 4.93700 4.95193 5.01392 5.08866 5.16519 5.37152 5.49682 5.74564 5.82852 6.05794 6.10083 6.15757 6.21289 7.02681 8.70012 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003093 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.034798 B = 9049.557052 C =11641.276385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.141 3.859 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.208 4.208 7 C -0.004 4.004 8 C 0.130 3.870 9 H 0.087 0.913 10 C 0.077 3.923 11 O -0.390 6.390 12 C 0.063 3.937 13 C 0.009 3.991 14 N -0.537 5.537 15 C 0.078 3.922 16 C -0.084 4.084 17 C -0.088 4.088 18 S -0.186 6.186 19 C -0.543 4.543 20 H 0.070 0.930 21 C 0.018 3.982 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.266 1.266 27 O -0.174 6.174 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 23.602 -13.137 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.066 3.934 4 C -0.090 4.090 5 C -0.205 4.205 6 C -0.227 4.227 7 C -0.055 4.055 8 C 0.022 3.978 9 H 0.104 0.896 10 C 0.000 4.000 11 O -0.308 6.308 12 C -0.014 4.014 13 C -0.118 4.118 14 N -0.263 5.263 15 C -0.051 4.051 16 C -0.123 4.123 17 C -0.237 4.237 18 S 0.043 5.957 19 C -0.691 4.691 20 H 0.088 0.912 21 C -0.187 4.187 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.190 1.190 27 O -0.070 6.070 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.189 0.811 34 H 0.188 0.812 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.576 23.849 -11.315 26.403 hybrid contribution -0.413 -1.848 -2.026 2.773 sum -0.989 22.001 -13.341 25.749 Atomic orbital electron populations 1.22966 0.78490 1.03888 1.01613 1.87972 1.22191 1.28082 1.95751 1.20874 0.83294 0.85446 1.03834 1.22519 0.93785 1.08112 0.84580 1.21904 0.92411 1.05960 1.00190 1.21898 0.99289 1.08227 0.93316 1.22232 0.82900 1.06173 0.94234 1.20963 0.90564 0.96736 0.89585 0.89559 1.22730 0.90590 0.93226 0.93457 1.87993 1.39468 1.68741 1.34594 1.22853 1.02733 0.87717 0.88058 1.23024 0.91789 0.99562 0.97429 1.62295 1.37248 1.11657 1.15063 1.21923 1.00015 0.87108 0.96044 1.21279 1.02334 0.91046 0.97649 1.23119 1.02266 0.98028 1.00319 1.84516 1.90266 1.06873 1.14057 1.23006 1.54123 0.96233 0.95730 0.91206 1.26043 0.94475 1.02524 0.95657 1.70134 1.47034 1.30227 1.06823 0.85091 0.79102 0.76316 0.78068 1.18894 1.19660 1.19044 1.84034 1.16902 1.70559 1.35492 0.92889 0.91507 0.89306 0.90902 0.86984 0.81129 0.81208 0.85937 0.92382 0.85916 0.91983 0.93345 0.88441 0.92135 0.94302 0.90431 0.91515 0.92797 0.92062 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.96 10.69 -148.98 -1.59 -11.55 16 3 C 0.14 2.59 6.47 71.24 0.46 3.05 16 4 C -0.04 -0.94 6.95 24.83 0.17 -0.76 16 5 C -0.19 -3.78 10.81 22.19 0.24 -3.54 16 6 C -0.21 -4.26 10.80 22.19 0.24 -4.02 16 7 C 0.00 -0.10 4.84 24.83 0.12 0.02 16 8 C 0.13 2.85 2.40 44.18 0.11 2.96 16 9 H 0.09 1.77 8.13 -2.39 -0.02 1.75 16 10 C 0.08 1.46 6.27 72.02 0.45 1.91 16 11 O -0.39 -8.06 10.83 -148.98 -1.61 -9.68 16 12 C 0.06 1.18 7.01 72.02 0.50 1.69 16 13 C 0.01 0.21 4.94 86.31 0.43 0.63 16 14 N -0.54 -13.79 4.67 -874.39 -4.09 -17.87 16 15 C 0.08 2.34 4.73 86.30 0.41 2.75 16 16 C -0.08 -2.90 4.49 30.59 0.14 -2.77 16 17 C -0.09 -3.77 5.67 71.98 0.41 -3.36 16 18 S -0.19 -10.16 21.44 -56.49 -1.21 -11.37 16 19 C -0.54 -32.29 9.50 67.95 0.65 -31.65 16 20 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 21 C 0.02 1.05 5.49 84.86 0.47 1.52 16 22 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 23 Si 0.99 44.67 29.55 68.60 2.03 46.70 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 O -0.17 -4.80 10.26 -2.52 -0.03 -4.82 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 2.28 6.05 -2.39 -0.01 2.27 16 41 H 0.06 2.04 7.12 -2.39 -0.02 2.02 16 42 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 43 H 0.08 2.53 6.28 -2.39 -0.01 2.52 16 44 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 45 H 0.05 2.37 8.14 -2.40 -0.02 2.35 16 46 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 47 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.09 397.09 0.76 -73.33 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.94 Total: 20.24 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 6.04 Total: -29.92 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -3.80 Total: -72.93 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -3.23 Total: -26.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.21 Total: -11.37 kcal Total: -74.09 0.76 -73.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932330123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.521 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds