Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35772 * 117.00131 * 2 1 4 4 C 1.38078 * 120.20003 * 0.03240 * 3 2 1 5 5 C 1.38744 * 120.40073 * 180.02562 * 4 3 2 6 6 C 1.37760 * 120.72706 * 359.95202 * 5 4 3 7 7 C 1.39167 * 120.07749 * 0.02562 * 6 5 4 8 8 N 1.37531 * 133.06136 * 180.38933 * 7 6 5 9 9 H 0.97002 * 125.63281 * 359.91794 * 8 7 6 10 10 C 1.38297 * 108.74663 * 180.09105 * 8 7 6 11 11 C 1.46912 * 125.45801 * 179.82602 * 10 8 7 12 12 O 1.21660 * 120.00088 * 179.69566 * 11 10 8 13 13 N 1.34780 * 119.99670 * 359.69765 * 11 10 8 14 14 C 1.49759 * 127.90615 * 0.28574 * 13 11 10 15 15 C 1.56022 * 105.31888 * 181.25901 * 14 13 11 16 16 H 1.08999 * 116.24911 * 160.00806 * 15 14 13 17 17 C 1.57082 * 99.60616 * 33.12604 * 15 14 13 18 18 C 1.49294 * 126.94136 * 179.97438 * 13 11 10 19 19 H 1.09002 * 116.15371 * 16.70409 * 18 13 11 20 20 C 1.56014 * 104.09328 * 247.55864 * 18 13 11 21 21 N 1.47870 * 105.10678 * 287.92674 * 20 18 13 22 22 C 1.36939 * 126.94175 * 181.96919 * 21 20 18 23 23 H 1.08004 * 119.99707 * 180.02562 * 22 21 20 24 24 C 1.38807 * 120.00481 * 0.02562 * 22 21 20 25 25 N 1.31620 * 119.99654 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99907 * 180.02562 * 24 22 21 27 27 H 1.48487 * 109.47404 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.46991 * 119.99936 * 26 24 22 29 29 H 1.48497 * 109.46943 * 239.99465 * 26 24 22 30 30 C 1.35940 * 109.08707 * 359.56534 * 10 8 7 31 31 C 1.40558 * 120.20353 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46663 * 299.99516 * 1 2 3 33 33 H 1.08991 * 109.47297 * 60.00030 * 1 2 3 34 34 H 1.09005 * 109.47216 * 179.97438 * 1 2 3 35 35 H 1.08001 * 119.80164 * 0.02562 * 4 3 2 36 36 H 1.08008 * 119.63651 * 179.97438 * 5 4 3 37 37 H 1.08002 * 119.96858 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.93901 * 62.41902 * 14 13 11 39 39 H 1.09000 * 110.56908 * 300.41731 * 14 13 11 40 40 H 1.08997 * 112.36479 * 191.71340 * 17 15 14 41 41 H 1.09006 * 112.36430 * 64.28415 * 17 15 14 42 42 H 1.09006 * 110.31678 * 46.82922 * 20 18 13 43 43 H 1.09004 * 110.31753 * 168.91164 * 20 18 13 44 44 H 0.97001 * 119.99513 * 180.02562 * 25 24 22 45 45 H 1.08002 * 126.12553 * 180.24214 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 0.0007 5 6 1.9230 3.6088 0.0001 6 6 3.2974 3.7031 -0.0001 7 6 4.0757 2.5494 -0.0003 8 7 5.4338 2.3329 0.0063 9 1 6.1160 3.0225 0.0116 10 6 5.6666 0.9697 0.0002 11 6 6.9896 0.3310 0.0006 12 8 7.0794 -0.8823 0.0005 13 7 8.1039 1.0893 0.0013 14 6 8.1998 2.5838 0.0075 15 6 9.7275 2.8989 -0.0278 16 1 10.0060 3.8980 -0.3632 17 6 10.2253 1.6864 -0.8935 18 6 9.5170 0.6075 0.0023 19 1 9.6696 -0.4345 -0.2786 20 6 10.0620 1.0320 1.4012 21 7 10.2118 2.5012 1.3269 22 6 10.6962 3.3295 2.3038 23 1 10.7566 4.3936 2.1286 24 6 11.1098 2.8018 3.5192 25 7 11.0358 1.5052 3.7329 26 14 11.7700 3.9320 4.8520 27 1 11.7495 5.3350 4.3662 28 1 10.9213 3.8152 6.0651 29 1 13.1643 3.5438 5.1842 30 6 4.4751 0.3152 -0.0004 31 6 3.4488 1.2882 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2189 2.3139 0.0016 36 1 1.3259 4.5088 0.0003 37 1 3.7716 4.6735 -0.0001 38 1 7.7524 2.9811 0.9184 39 1 7.7066 3.0028 -0.8696 40 1 11.3107 1.5869 -0.8826 41 1 9.8272 1.7099 -1.9080 42 1 9.3505 0.7632 2.1821 43 1 11.0265 0.5607 1.5905 44 1 11.3244 1.1364 4.5824 45 1 4.3370 -0.7559 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032780203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 59.550819 kcal Electronic energy + Delta-G solvation = -29616.757713 eV Core-core repulsion = 25602.427686 eV Total energy + Delta-G solvation = -4014.330027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65996 -40.04015 -39.16040 -37.76810 -36.04040 -33.73472 -32.04038 -31.51941 -29.79515 -29.03793 -28.76652 -28.60946 -27.34157 -25.39156 -24.38457 -23.09208 -21.96839 -21.32365 -20.31603 -19.89002 -19.22552 -18.17694 -17.72600 -16.64732 -16.36335 -15.95723 -15.74225 -15.71615 -15.39261 -15.25608 -14.77756 -14.13790 -14.12995 -13.77666 -13.64113 -13.32774 -13.20867 -12.94191 -12.58256 -12.26937 -12.08828 -12.00447 -11.80978 -11.63636 -11.40579 -11.19788 -11.12212 -11.00612 -10.94309 -10.88757 -10.71673 -10.35687 -10.13223 -9.81693 -9.72764 -9.51731 -8.80101 -8.40896 -8.17859 -7.47505 -7.03172 -5.84747 -3.20482 0.83444 1.48911 2.19639 2.86458 3.11248 3.25295 3.32371 3.37035 3.40681 3.58918 3.77548 4.33804 4.52798 4.70008 4.80010 4.90313 4.94226 4.95528 5.00220 5.04684 5.20810 5.24223 5.26502 5.33857 5.43994 5.44506 5.51749 5.63508 5.67035 5.70212 5.90598 5.99458 6.09351 6.14561 6.25972 6.28075 6.37366 6.44511 6.47291 6.55481 6.60156 6.83770 7.29909 7.33684 7.37511 7.42316 7.64598 7.86888 8.01159 8.40271 9.01397 9.62423 10.30016 11.27125 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002922 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.631466 B = 9579.418810 C =10215.619162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.186 3.814 4 C -0.253 4.253 5 C -0.052 4.052 6 C -0.170 4.170 7 C 0.144 3.856 8 N -0.575 5.575 9 H 0.423 0.577 10 C 0.023 3.977 11 C 0.597 3.403 12 O -0.535 6.535 13 N -0.607 5.607 14 C 0.070 3.930 15 C 0.145 3.855 16 H 0.110 0.890 17 C -0.150 4.150 18 C 0.099 3.901 19 H 0.116 0.884 20 C 0.172 3.828 21 N -0.596 5.596 22 C -0.237 4.237 23 H 0.082 0.918 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.913 3.087 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.289 1.289 30 C -0.096 4.096 31 C -0.141 4.141 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.255 0.745 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 3.191 -10.882 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.140 3.860 4 C -0.273 4.273 5 C -0.072 4.072 6 C -0.191 4.191 7 C 0.032 3.968 8 N -0.183 5.183 9 H 0.267 0.733 10 C -0.086 4.086 11 C 0.386 3.614 12 O -0.413 6.413 13 N -0.340 5.340 14 C -0.055 4.055 15 C 0.035 3.965 16 H 0.128 0.872 17 C -0.189 4.189 18 C -0.003 4.003 19 H 0.134 0.866 20 C 0.047 3.953 21 N -0.320 5.320 22 C -0.365 4.365 23 H 0.100 0.900 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.744 3.256 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.216 1.216 30 C -0.122 4.122 31 C -0.146 4.146 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.987 2.330 -10.580 20.147 hybrid contribution 0.259 1.102 0.935 1.468 sum -16.728 3.431 -9.645 19.612 Atomic orbital electron populations 1.23073 0.78384 1.03915 1.01401 1.86063 1.21298 1.27085 1.87797 1.18462 0.89746 0.84283 0.93539 1.20822 0.99615 0.91868 1.15036 1.20518 0.93160 0.96886 0.96602 1.19927 0.93155 0.95511 1.10478 1.18076 0.83120 0.94577 1.01053 1.42683 1.05778 1.06985 1.62833 0.73330 1.20253 0.95014 0.82281 1.11028 1.16682 0.81403 0.85947 0.77410 1.90819 1.85921 1.12471 1.52073 1.49551 1.06034 1.07476 1.70962 1.23870 1.02517 0.79552 0.99546 1.23135 0.88712 0.96810 0.87827 0.87180 1.24161 1.00882 0.96873 0.97006 1.24371 0.78176 0.98305 0.99430 0.86569 1.21972 0.99484 0.83851 0.89991 1.45263 1.73646 1.02889 1.10164 1.19074 1.35648 0.89596 0.92132 0.90041 1.24844 1.01206 0.96101 0.97949 1.69924 1.52086 1.09931 1.24274 0.86035 0.78349 0.79458 0.81793 1.20439 1.21711 1.21635 1.20743 0.88598 0.99477 1.03431 1.17348 0.90441 0.93367 1.13440 0.92542 0.92588 0.88268 0.85492 0.85451 0.85872 0.90833 0.92697 0.89368 0.91495 0.93310 0.92311 0.93494 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.78 10.50 -19.03 -0.20 -3.98 16 3 C 0.19 2.44 6.73 -38.77 -0.26 2.18 16 4 C -0.25 -2.68 9.03 -39.45 -0.36 -3.04 16 5 C -0.05 -0.52 10.01 -39.57 -0.40 -0.92 16 6 C -0.17 -1.94 10.06 -39.41 -0.40 -2.33 16 7 C 0.14 2.02 7.25 -83.98 -0.61 1.41 16 8 N -0.57 -8.35 5.83 -7.35 -0.04 -8.39 16 9 H 0.42 5.48 5.02 -40.82 -0.20 5.28 16 10 C 0.02 0.40 6.85 -82.26 -0.56 -0.17 16 11 C 0.60 11.50 7.89 -12.75 -0.10 11.40 16 12 O -0.54 -11.72 17.19 5.22 0.09 -11.63 16 13 N -0.61 -11.10 3.01 -156.65 -0.47 -11.57 16 14 C 0.07 1.13 4.60 -0.61 0.00 1.13 16 15 C 0.14 2.51 5.53 -62.56 -0.35 2.17 16 16 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 17 C -0.15 -2.40 6.82 -22.29 -0.15 -2.55 16 18 C 0.10 1.87 5.19 -62.54 -0.32 1.55 16 19 H 0.12 2.13 8.06 -51.93 -0.42 1.71 16 20 C 0.17 4.03 4.76 -1.68 -0.01 4.02 16 21 N -0.60 -13.76 3.02 -156.35 -0.47 -14.23 16 22 C -0.24 -6.10 10.37 -15.06 -0.16 -6.26 16 23 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 24 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 25 N -0.92 -26.28 10.56 55.49 0.59 -25.69 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 C -0.10 -1.58 10.52 -39.19 -0.41 -1.99 16 31 C -0.14 -2.12 6.11 -106.83 -0.65 -2.78 16 32 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.07 1.28 7.40 -51.93 -0.38 0.90 16 39 H 0.06 0.70 7.21 -51.93 -0.37 0.33 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.33 7.67 -51.93 -0.40 0.94 16 43 H 0.06 1.51 7.46 -51.93 -0.39 1.13 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -32.65 365.29 -9.67 -42.32 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.80 Total: 6.52 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.84 Total: 4.82 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.40 Total: -59.88 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.11 Total: -15.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.65 -9.67 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032780203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.869 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds