Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35772 * 117.00131 * 2 1 4 4 C 1.38078 * 120.20003 * 0.03240 * 3 2 1 5 5 C 1.38744 * 120.40073 * 180.02562 * 4 3 2 6 6 C 1.37760 * 120.72706 * 359.95202 * 5 4 3 7 7 C 1.39167 * 120.07749 * 0.02562 * 6 5 4 8 8 N 1.37531 * 133.06136 * 180.38933 * 7 6 5 9 9 H 0.97002 * 125.63281 * 359.91794 * 8 7 6 10 10 C 1.38297 * 108.74663 * 180.09105 * 8 7 6 11 11 C 1.46912 * 125.45801 * 179.82602 * 10 8 7 12 12 O 1.21660 * 120.00088 * 179.69566 * 11 10 8 13 13 N 1.34780 * 119.99670 * 359.69765 * 11 10 8 14 14 C 1.49759 * 127.90615 * 0.28574 * 13 11 10 15 15 C 1.56022 * 105.31888 * 181.25901 * 14 13 11 16 16 H 1.08999 * 116.24911 * 160.00806 * 15 14 13 17 17 C 1.57082 * 99.60616 * 33.12604 * 15 14 13 18 18 C 1.49294 * 126.94136 * 179.97438 * 13 11 10 19 19 H 1.09002 * 116.15371 * 16.70409 * 18 13 11 20 20 C 1.56014 * 104.09328 * 247.55864 * 18 13 11 21 21 N 1.47870 * 105.10678 * 287.92674 * 20 18 13 22 22 C 1.36939 * 126.94175 * 181.96919 * 21 20 18 23 23 H 1.08004 * 119.99707 * 180.02562 * 22 21 20 24 24 C 1.38807 * 120.00481 * 0.02562 * 22 21 20 25 25 N 1.31620 * 119.99654 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99907 * 180.02562 * 24 22 21 27 27 H 1.48487 * 109.47404 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.46991 * 119.99936 * 26 24 22 29 29 H 1.48497 * 109.46943 * 239.99465 * 26 24 22 30 30 C 1.35940 * 109.08707 * 359.56534 * 10 8 7 31 31 C 1.40558 * 120.20353 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46663 * 299.99516 * 1 2 3 33 33 H 1.08991 * 109.47297 * 60.00030 * 1 2 3 34 34 H 1.09005 * 109.47216 * 179.97438 * 1 2 3 35 35 H 1.08001 * 119.80164 * 0.02562 * 4 3 2 36 36 H 1.08008 * 119.63651 * 179.97438 * 5 4 3 37 37 H 1.08002 * 119.96858 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.93901 * 62.41902 * 14 13 11 39 39 H 1.09000 * 110.56908 * 300.41731 * 14 13 11 40 40 H 1.08997 * 112.36479 * 191.71340 * 17 15 14 41 41 H 1.09006 * 112.36430 * 64.28415 * 17 15 14 42 42 H 1.09006 * 110.31678 * 46.82922 * 20 18 13 43 43 H 1.09004 * 110.31753 * 168.91164 * 20 18 13 44 44 H 0.97001 * 119.99513 * 180.02562 * 25 24 22 45 45 H 1.08002 * 126.12553 * 180.24214 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 0.0007 5 6 1.9230 3.6088 0.0001 6 6 3.2974 3.7031 -0.0001 7 6 4.0757 2.5494 -0.0003 8 7 5.4338 2.3329 0.0063 9 1 6.1160 3.0225 0.0116 10 6 5.6666 0.9697 0.0002 11 6 6.9896 0.3310 0.0006 12 8 7.0794 -0.8823 0.0005 13 7 8.1039 1.0893 0.0013 14 6 8.1998 2.5838 0.0075 15 6 9.7275 2.8989 -0.0278 16 1 10.0060 3.8980 -0.3632 17 6 10.2253 1.6864 -0.8935 18 6 9.5170 0.6075 0.0023 19 1 9.6696 -0.4345 -0.2786 20 6 10.0620 1.0320 1.4012 21 7 10.2118 2.5012 1.3269 22 6 10.6962 3.3295 2.3038 23 1 10.7566 4.3936 2.1286 24 6 11.1098 2.8018 3.5192 25 7 11.0358 1.5052 3.7329 26 14 11.7700 3.9320 4.8520 27 1 11.7495 5.3350 4.3662 28 1 10.9213 3.8152 6.0651 29 1 13.1643 3.5438 5.1842 30 6 4.4751 0.3152 -0.0004 31 6 3.4488 1.2882 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2189 2.3139 0.0016 36 1 1.3259 4.5088 0.0003 37 1 3.7716 4.6735 -0.0001 38 1 7.7524 2.9811 0.9184 39 1 7.7066 3.0028 -0.8696 40 1 11.3107 1.5869 -0.8826 41 1 9.8272 1.7099 -1.9080 42 1 9.3505 0.7632 2.1821 43 1 11.0265 0.5607 1.5905 44 1 11.3244 1.1364 4.5824 45 1 4.3370 -0.7559 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032780203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 38.766306 kcal Electronic energy + Delta-G solvation = -29617.658997 eV Core-core repulsion = 25602.427686 eV Total energy + Delta-G solvation = -4015.231311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.76405 -41.44392 -40.13513 -39.25372 -36.97425 -35.51602 -33.51590 -32.81304 -31.18724 -30.44600 -30.10984 -29.71200 -28.06973 -27.06984 -25.89343 -24.46944 -22.94535 -22.50080 -21.63879 -21.39569 -20.62617 -19.41294 -19.00156 -18.25471 -17.61434 -17.15015 -16.80648 -16.78810 -16.52846 -16.33838 -16.26654 -15.78852 -15.35180 -15.15867 -14.91968 -14.69310 -14.42330 -13.94900 -13.84329 -13.61300 -13.47317 -13.26558 -13.14849 -12.88813 -12.83800 -12.77522 -12.46617 -12.36559 -12.22652 -12.03641 -11.97799 -11.93798 -11.81512 -11.58050 -11.36184 -10.79498 -10.58135 -9.78034 -9.34930 -8.96529 -8.46804 -7.87309 -5.23835 -0.24502 0.56750 1.02373 1.45911 1.46109 1.56400 1.63585 1.92889 2.21944 2.38730 2.45870 2.83754 3.21910 3.31162 3.41885 3.70744 3.73620 3.82010 3.95625 4.02602 4.05655 4.15109 4.23054 4.31600 4.37384 4.45612 4.46870 4.48974 4.58188 4.60529 4.73922 4.78335 4.82081 4.91334 4.96557 5.06911 5.16863 5.31653 5.36771 5.41661 5.50316 5.52495 5.57699 5.63346 5.84727 6.05944 6.35488 6.41995 6.49086 6.91267 6.99287 7.67583 8.37073 9.23927 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002922 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.631466 B = 9579.418810 C =10215.619162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.171 3.829 4 C -0.246 4.246 5 C -0.038 4.038 6 C -0.179 4.179 7 C 0.140 3.860 8 N -0.569 5.569 9 H 0.429 0.571 10 C 0.001 3.999 11 C 0.593 3.407 12 O -0.576 6.576 13 N -0.609 5.609 14 C 0.077 3.923 15 C 0.142 3.858 16 H 0.146 0.854 17 C -0.126 4.126 18 C 0.100 3.900 19 H 0.116 0.884 20 C 0.186 3.814 21 N -0.615 5.615 22 C -0.229 4.229 23 H 0.100 0.900 24 C -0.072 4.072 25 N -0.957 5.957 26 Si 0.976 3.024 27 H -0.256 1.256 28 H -0.302 1.302 29 H -0.297 1.297 30 C -0.102 4.102 31 C -0.172 4.172 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.104 0.896 42 H -0.006 1.006 43 H 0.022 0.978 44 H 0.243 0.757 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.826 6.909 -12.988 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.124 3.876 4 C -0.266 4.266 5 C -0.057 4.057 6 C -0.200 4.200 7 C 0.028 3.972 8 N -0.179 5.179 9 H 0.273 0.727 10 C -0.108 4.108 11 C 0.383 3.617 12 O -0.456 6.456 13 N -0.341 5.341 14 C -0.047 4.047 15 C 0.035 3.965 16 H 0.163 0.837 17 C -0.165 4.165 18 C -0.003 4.003 19 H 0.134 0.866 20 C 0.060 3.940 21 N -0.339 5.339 22 C -0.358 4.358 23 H 0.118 0.882 24 C -0.265 4.265 25 N -0.606 5.606 26 Si 0.806 3.194 27 H -0.179 1.179 28 H -0.230 1.230 29 H -0.225 1.225 30 C -0.129 4.129 31 C -0.177 4.177 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.013 0.987 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.486 6.118 -12.741 24.072 hybrid contribution 0.802 -0.038 1.550 1.745 sum -18.683 6.080 -11.192 22.612 Atomic orbital electron populations 1.23400 0.75937 1.05555 1.02756 1.86032 1.23905 1.27222 1.87743 1.18684 0.89326 0.85544 0.94067 1.21256 1.01143 0.91143 1.13050 1.21066 0.92910 0.98097 0.93634 1.20325 0.93745 0.95543 1.10397 1.18459 0.82732 0.95241 1.00790 1.42494 1.06375 1.05861 1.63142 0.72655 1.19837 0.93678 0.83656 1.13668 1.17033 0.82377 0.85654 0.76650 1.90777 1.86654 1.14201 1.54013 1.49591 1.05413 1.08586 1.70489 1.23826 1.01787 0.78066 1.01003 1.23590 0.89039 0.98956 0.84892 0.83656 1.24073 1.00648 0.93910 0.97906 1.24241 0.79139 0.99542 0.97331 0.86608 1.21543 0.96378 0.84739 0.91385 1.45501 1.73666 1.02452 1.12260 1.19587 1.33145 0.90680 0.92357 0.88245 1.25688 1.02949 0.97243 1.00598 1.70170 1.54414 1.11894 1.24097 0.85027 0.76745 0.78908 0.78757 1.17934 1.23003 1.22460 1.20817 0.89493 0.99495 1.03138 1.17611 0.91531 0.93423 1.15123 0.91265 0.90929 0.86758 0.82402 0.81454 0.83392 0.92327 0.88009 0.89389 0.87722 0.98732 0.95959 0.94758 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.93 10.50 -90.99 -0.96 -8.88 16 3 C 0.17 4.23 6.73 22.80 0.15 4.38 16 4 C -0.25 -4.32 9.03 22.35 0.20 -4.11 16 5 C -0.04 -0.58 10.01 22.28 0.22 -0.36 16 6 C -0.18 -3.46 10.06 22.38 0.23 -3.23 16 7 C 0.14 3.71 7.25 39.11 0.28 3.99 16 8 N -0.57 -16.08 5.83 -177.18 -1.03 -17.12 16 9 H 0.43 10.36 5.02 -92.71 -0.47 9.90 16 10 C 0.00 0.02 6.85 39.86 0.27 0.29 16 11 C 0.59 23.76 7.89 86.51 0.68 24.44 16 12 O -0.58 -26.80 17.19 -4.22 -0.07 -26.87 16 13 N -0.61 -22.44 3.01 -767.76 -2.31 -24.75 16 14 C 0.08 2.32 4.60 86.79 0.40 2.72 16 15 C 0.14 4.57 5.53 46.94 0.26 4.83 16 16 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 17 C -0.13 -3.76 6.82 33.47 0.23 -3.53 16 18 C 0.10 3.87 5.19 46.94 0.24 4.11 16 19 H 0.12 4.44 8.06 -2.39 -0.02 4.42 16 20 C 0.19 9.20 4.76 87.16 0.41 9.61 16 21 N -0.61 -28.51 3.02 -648.58 -1.96 -30.47 16 22 C -0.23 -11.77 10.37 84.03 0.87 -10.90 16 23 H 0.10 4.66 7.83 -2.91 -0.02 4.64 16 24 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 25 N -0.96 -58.16 10.56 21.65 0.23 -57.93 16 26 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 30 C -0.10 -3.51 10.52 22.52 0.24 -3.28 16 31 C -0.17 -5.16 6.11 -21.29 -0.13 -5.29 16 32 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 33 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 34 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.16 1.72 6.28 -2.91 -0.02 1.71 16 36 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.06 1.98 7.40 -2.39 -0.02 1.97 16 39 H 0.10 2.19 7.21 -2.39 -0.02 2.17 16 40 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 42 H -0.01 -0.33 7.67 -2.38 -0.02 -0.35 16 43 H 0.02 1.24 7.46 -2.38 -0.02 1.22 16 44 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.14 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -78.05 365.29 2.64 -75.42 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.57 Total: 22.32 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 6.14 Total: 21.48 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -5.08 Total: -130.26 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.03 Total: -35.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -78.05 2.64 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032780203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.184 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds