Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99518 * 2 1 4 4 H 1.08996 * 110.92329 * 26.09984 * 3 2 1 5 5 C 1.54916 * 111.00516 * 262.19690 * 3 2 1 6 6 N 1.47420 * 104.83283 * 204.92075 * 5 3 2 7 7 C 1.36936 * 125.65071 * 204.09290 * 6 5 3 8 8 H 1.08000 * 120.00191 * 180.02562 * 7 6 5 9 9 C 1.38812 * 119.99824 * 0.04471 * 7 6 5 10 10 N 1.31618 * 120.00028 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00150 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47282 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47438 * 119.99722 * 11 9 7 14 14 H 1.48501 * 109.47237 * 239.99247 * 11 9 7 15 15 C 1.47020 * 108.70466 * 24.12778 * 6 5 3 16 16 C 1.54321 * 107.27160 * 358.93970 * 15 6 5 17 17 H 1.09007 * 110.71864 * 96.34551 * 16 15 6 18 18 N 1.46498 * 110.72408 * 219.44296 * 16 15 6 19 19 C 1.34778 * 119.99988 * 273.55112 * 18 16 15 20 20 O 1.21543 * 119.99942 * 359.97438 * 19 18 16 21 21 C 1.47908 * 119.99759 * 180.02562 * 19 18 16 22 22 C 1.38891 * 121.11464 * 354.15467 * 21 19 18 23 23 C 1.39269 * 119.57835 * 180.02562 * 22 21 19 24 24 N 1.30991 * 121.88449 * 359.97438 * 23 22 21 25 25 C 1.33533 * 121.82870 * 0.02562 * 24 23 22 26 26 C 1.40723 * 120.97257 * 180.02562 * 25 24 23 27 27 C 1.36050 * 119.74178 * 180.02562 * 26 25 24 28 28 C 1.39360 * 121.05399 * 359.97438 * 27 26 25 29 29 C 1.36247 * 120.83876 * 0.28631 * 28 27 26 30 30 C 1.40101 * 119.64190 * 359.44439 * 29 28 27 31 31 H 1.08999 * 109.46924 * 299.99479 * 1 2 3 32 32 H 1.09000 * 109.47488 * 60.00300 * 1 2 3 33 33 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 34 34 H 1.09000 * 110.36685 * 86.08026 * 5 3 2 35 35 H 1.08998 * 110.36650 * 323.75875 * 5 3 2 36 36 H 0.97002 * 120.00225 * 180.02562 * 10 9 7 37 37 H 1.09006 * 109.88776 * 239.52600 * 15 6 5 38 38 H 1.09000 * 109.88528 * 118.36256 * 15 6 5 39 39 H 0.96994 * 120.00275 * 93.54716 * 18 16 15 40 40 H 1.08002 * 120.20953 * 0.04617 * 22 21 19 41 41 H 1.07999 * 119.05267 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.12670 * 0.02562 * 26 25 24 43 43 H 1.07996 * 119.47807 * 180.02562 * 27 26 25 44 44 H 1.08001 * 119.57979 * 180.02562 * 28 27 26 45 45 H 1.08002 * 120.17516 * 179.73486 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4153 1.7329 -1.4328 6 7 3.4907 2.7230 -1.2414 7 6 3.8428 3.7012 -2.1325 8 1 4.6491 4.3805 -1.8981 9 6 3.1632 3.8201 -3.3370 10 7 2.1807 2.9922 -3.6228 11 14 3.6439 5.1541 -4.5530 12 1 4.7705 5.9469 -3.9984 13 1 4.0612 4.5293 -5.8340 14 1 2.4819 6.0470 -4.7933 15 6 4.1232 2.4855 0.0644 16 6 3.3823 1.3034 0.7241 17 1 3.9135 0.3682 0.5469 18 7 3.2108 1.5357 2.1604 19 6 4.1856 1.1822 3.0214 20 8 5.2069 0.6704 2.6062 21 6 4.0121 1.4163 4.4715 22 6 2.9100 2.1057 4.9604 23 6 2.7789 2.3084 6.3320 24 7 3.6690 1.8656 7.1850 25 6 4.7531 1.1951 6.7872 26 6 5.6977 0.7271 7.7194 27 6 6.7936 0.0470 7.2864 28 6 6.9989 -0.1964 5.9297 29 6 6.1085 0.2461 4.9981 30 6 4.9658 0.9449 5.4088 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.5684 2.1874 -1.9469 35 1 2.7851 0.8750 -1.9943 36 1 1.7060 3.0750 -4.4647 37 1 4.0314 3.3749 0.6880 38 1 5.1747 2.2337 -0.0732 39 1 2.3957 1.9439 2.4917 40 1 2.1592 2.4820 4.2813 41 1 1.9184 2.8452 6.7030 42 1 5.5532 0.9071 8.7744 43 1 7.5156 -0.3106 8.0055 44 1 7.8770 -0.7391 5.6123 45 1 6.2804 0.0551 3.9491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081912206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = 21.771587 kcal Electronic energy + Delta-G solvation = -29206.533945 eV Core-core repulsion = 25190.565687 eV Total energy + Delta-G solvation = -4015.968258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28799 -39.62227 -38.15850 -37.30531 -36.01567 -34.32828 -33.60180 -31.88657 -30.76210 -30.22034 -28.85453 -27.30743 -26.15538 -25.33094 -24.19355 -23.77359 -22.82259 -21.10579 -20.61069 -20.04297 -18.42423 -17.87282 -17.56070 -16.96330 -16.59867 -15.70619 -15.59159 -15.19697 -15.14580 -14.93250 -14.60937 -14.38674 -14.34012 -14.16194 -14.07521 -13.50326 -13.34539 -13.22406 -12.88340 -12.30787 -12.00639 -12.00239 -11.85276 -11.57889 -11.54705 -11.34536 -11.09068 -10.89030 -10.85424 -10.66858 -10.43076 -10.19888 -9.97882 -9.88736 -9.44706 -9.20560 -9.03667 -8.84154 -8.76006 -8.44990 -6.96326 -5.75282 -3.18463 -0.11291 0.55744 1.54104 2.59705 2.97432 3.03162 3.35107 3.41226 3.43561 3.92807 3.99444 4.03166 4.31411 4.39218 4.45276 4.50906 4.62637 4.86923 4.97528 5.08991 5.11273 5.29893 5.33988 5.38368 5.42057 5.52300 5.53719 5.59404 5.60605 5.74495 5.80085 5.86478 5.90465 5.97945 6.10208 6.11019 6.26437 6.30483 6.43464 6.59804 6.66678 6.77317 7.17783 7.42046 7.51857 7.59664 7.65888 7.72185 8.12273 8.21492 9.10357 9.70556 10.32293 11.28707 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.002678 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.656321 B =10451.880034 C =11088.371940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.081 0.919 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.134 3.866 17 H 0.105 0.895 18 N -0.703 5.703 19 C 0.559 3.441 20 O -0.522 6.522 21 C -0.063 4.063 22 C -0.141 4.141 23 C 0.126 3.874 24 N -0.461 5.461 25 C 0.124 3.876 26 C -0.101 4.101 27 C -0.097 4.097 28 C -0.120 4.120 29 C -0.098 4.098 30 C -0.066 4.066 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.028 0.972 36 H 0.253 0.747 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.398 0.602 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -4.920 20.445 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.086 0.914 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.099 0.901 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.123 0.877 18 N -0.353 5.353 19 C 0.345 3.655 20 O -0.400 6.400 21 C -0.075 4.075 22 C -0.162 4.162 23 C -0.046 4.046 24 N -0.170 5.170 25 C 0.002 3.998 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.116 4.116 30 C -0.069 4.069 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.233 0.767 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.277 -5.285 20.829 21.491 hybrid contribution -0.366 0.986 -1.318 1.686 sum -0.090 -4.299 19.511 19.979 Atomic orbital electron populations 1.22721 0.81504 1.02050 0.99949 1.87857 1.19287 1.27610 1.95079 1.24044 0.92406 0.83856 1.00151 0.91407 1.22307 0.94712 0.92087 0.89292 1.44309 1.37293 1.35483 1.15718 1.19140 1.13904 1.06079 0.95955 0.90108 1.24808 0.98498 0.99365 0.97877 1.69752 1.24629 1.38632 1.24097 0.85955 0.77598 0.80709 0.80975 1.20434 1.21621 1.21692 1.21602 0.95943 0.93871 0.88223 1.22284 0.97212 1.00460 0.77039 0.87709 1.45941 1.19688 1.62101 1.07540 1.18022 0.83752 0.78663 0.85017 1.90603 1.27608 1.43326 1.78460 1.20438 0.95114 0.98256 0.93643 1.22452 0.97561 0.98479 0.97704 1.22894 0.97152 0.95560 0.88969 1.67794 1.01746 1.08529 1.38883 1.18889 0.93476 0.96709 0.90734 1.20760 0.93323 0.98672 0.99248 1.21001 0.97114 0.97340 0.96220 1.21126 0.99914 0.99988 0.92821 1.22130 0.91786 0.94321 1.03322 1.18691 0.95934 0.99393 0.92891 0.94802 0.93435 0.90229 0.86878 0.95416 0.93598 0.95208 0.94633 0.76691 0.83954 0.81696 0.84675 0.85280 0.85303 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.63 10.51 -35.23 -0.37 -7.00 16 3 C 0.05 1.00 3.15 -24.58 -0.08 0.92 16 4 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 5 C 0.14 3.34 5.62 -2.53 -0.01 3.32 16 6 N -0.60 -14.99 3.39 -170.07 -0.58 -15.57 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 10 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 11 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.13 2.74 6.99 -3.07 -0.02 2.72 16 16 C 0.13 2.41 2.97 -66.10 -0.20 2.21 16 17 H 0.10 2.06 7.69 -51.93 -0.40 1.66 16 18 N -0.70 -10.03 5.09 -52.95 -0.27 -10.30 16 19 C 0.56 8.41 7.75 -12.30 -0.10 8.32 16 20 O -0.52 -9.30 13.25 5.33 0.07 -9.23 16 21 C -0.06 -0.82 5.94 -104.34 -0.62 -1.43 16 22 C -0.14 -1.39 9.60 -38.96 -0.37 -1.76 16 23 C 0.13 1.19 11.14 -17.53 -0.20 1.00 16 24 N -0.46 -5.46 10.30 -11.01 -0.11 -5.58 16 25 C 0.12 1.55 6.61 -84.87 -0.56 0.99 16 26 C -0.10 -1.05 9.98 -39.43 -0.39 -1.44 16 27 C -0.10 -0.88 9.94 -39.95 -0.40 -1.28 16 28 C -0.12 -1.24 9.96 -39.88 -0.40 -1.64 16 29 C -0.10 -1.27 9.25 -39.60 -0.37 -1.64 16 30 C -0.07 -0.89 5.76 -106.52 -0.61 -1.50 16 31 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 2.94 5.87 -51.93 -0.31 2.64 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 4.48 6.69 -40.82 -0.27 4.21 16 40 H 0.14 0.98 6.55 -52.49 -0.34 0.64 16 41 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.17 2.48 4.98 -52.49 -0.26 2.22 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.64 371.34 -9.35 -42.00 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.75 Total: 5.23 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -3.48 Total: 3.76 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.40 Total: -56.93 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.30 Total: -16.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -9.35 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081912206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.769 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds