Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00290 * 2 1 4 4 H 1.08993 * 110.64138 * 26.85654 * 3 2 1 5 5 C 1.54325 * 110.86988 * 263.60634 * 3 2 1 6 6 N 1.47023 * 107.26931 * 219.37292 * 5 3 2 7 7 C 1.36935 * 125.64845 * 178.99655 * 6 5 3 8 8 H 1.07998 * 120.00084 * 185.07650 * 7 6 5 9 9 C 1.38811 * 119.99694 * 5.07636 * 7 6 5 10 10 N 1.31619 * 120.00552 * 5.16032 * 9 7 6 11 11 Si 1.86806 * 120.00010 * 185.15972 * 9 7 6 12 12 H 1.48502 * 109.47037 * 84.99875 * 11 9 7 13 13 H 1.48493 * 109.47208 * 205.00115 * 11 9 7 14 14 H 1.48503 * 109.46909 * 325.00251 * 11 9 7 15 15 C 1.47465 * 108.72324 * 358.97859 * 6 5 3 16 16 C 1.54913 * 104.81417 * 24.06727 * 15 6 5 17 17 H 1.09004 * 110.99812 * 81.13827 * 16 15 6 18 18 N 1.46497 * 111.00526 * 204.95085 * 16 15 6 19 19 C 1.34783 * 119.99933 * 270.41753 * 18 16 15 20 20 O 1.21543 * 120.00072 * 0.02562 * 19 18 16 21 21 C 1.47951 * 119.99961 * 180.02562 * 19 18 16 22 22 N 1.32197 * 120.15793 * 354.66614 * 21 19 18 23 23 C 1.32024 * 122.68083 * 180.25466 * 22 21 19 24 24 C 1.36690 * 122.02726 * 359.45669 * 23 22 21 25 25 C 1.40536 * 118.85080 * 0.25896 * 24 23 22 26 26 C 1.40312 * 122.23136 * 180.02562 * 25 24 23 27 27 C 1.36206 * 119.45832 * 179.97438 * 26 25 24 28 28 C 1.39379 * 120.99735 * 359.97438 * 27 26 25 29 29 C 1.36254 * 121.08408 * 0.02562 * 28 27 26 30 30 C 1.40088 * 119.53946 * 0.02562 * 29 28 27 31 31 H 1.08993 * 109.47625 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47024 * 300.00894 * 1 2 3 33 33 H 1.09008 * 109.46644 * 59.99858 * 1 2 3 34 34 H 1.09000 * 109.88295 * 338.79243 * 5 3 2 35 35 H 1.08995 * 109.87643 * 99.95780 * 5 3 2 36 36 H 0.96999 * 120.00404 * 179.97438 * 10 9 7 37 37 H 1.09005 * 110.34955 * 265.25376 * 15 6 5 38 38 H 1.09003 * 110.40912 * 142.91680 * 15 6 5 39 39 H 0.96995 * 119.99879 * 90.42123 * 18 16 15 40 40 H 1.07999 * 118.98784 * 179.74429 * 23 22 21 41 41 H 1.08005 * 120.57425 * 180.23514 * 24 23 22 42 42 H 1.08009 * 120.27003 * 359.95747 * 26 25 24 43 43 H 1.07993 * 119.49815 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.45900 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.23646 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3806 1.7424 -1.4330 6 7 3.6671 2.4498 -1.3549 7 6 4.3518 2.9804 -2.4155 8 1 5.3309 3.4107 -2.2653 9 6 3.7873 2.9652 -3.6835 10 7 2.5549 2.5343 -3.8503 11 14 4.7768 3.5564 -5.1535 12 1 5.6132 2.4422 -5.6677 13 1 3.8518 4.0145 -6.2210 14 1 5.6523 4.6825 -4.7403 15 6 4.0982 2.4940 0.0546 16 6 3.3816 1.2956 0.7257 17 1 3.9169 0.3650 0.5371 18 7 3.2164 1.5209 2.1638 19 6 4.1770 1.1255 3.0226 20 8 5.1805 0.5824 2.6039 21 6 4.0098 1.3525 4.4750 22 7 2.9714 2.0355 4.9253 23 6 2.7760 2.2716 6.2095 24 6 3.6344 1.8136 7.1695 25 6 4.7617 1.0735 6.7740 26 6 5.6883 0.5693 7.6992 27 6 6.7612 -0.1416 7.2533 28 6 6.9517 -0.3757 5.8926 29 6 6.0718 0.0992 4.9670 30 6 4.9569 0.8356 5.3881 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 2.4776 0.8663 -2.0743 35 1 1.6140 2.4096 -1.8268 36 1 2.1603 2.5241 -4.7363 37 1 3.7858 3.4302 0.5174 38 1 5.1796 2.3773 0.1252 39 1 2.4157 1.9546 2.4979 40 1 1.9087 2.8402 6.5111 41 1 3.4498 2.0174 8.2140 42 1 5.5520 0.7436 8.7564 43 1 7.4749 -0.5296 7.9648 44 1 7.8110 -0.9429 5.5665 45 1 6.2326 -0.0907 3.9161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082075396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -3.116719 kcal Electronic energy + Delta-G solvation = -29190.481549 eV Core-core repulsion = 25173.434054 eV Total energy + Delta-G solvation = -4017.047496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19204 -40.80758 -39.55268 -38.36654 -37.54279 -35.71993 -34.07422 -33.62455 -32.16431 -31.01027 -30.35720 -28.92631 -27.55283 -26.54726 -25.59550 -24.50155 -23.84004 -22.47749 -22.08671 -21.65549 -19.54039 -18.99411 -18.42208 -18.13076 -17.94535 -17.25946 -16.77982 -16.63586 -16.37481 -16.10603 -15.83944 -15.61847 -15.44877 -15.10172 -15.03581 -14.68983 -14.62628 -14.31809 -14.02043 -13.87245 -13.62800 -13.29024 -13.13259 -12.98892 -12.76799 -12.73132 -12.62873 -12.45968 -12.34554 -12.08891 -11.87613 -11.67314 -11.19318 -11.11582 -10.79617 -10.69309 -10.49965 -10.19812 -10.12464 -9.06712 -8.98037 -7.87953 -5.27666 -0.98439 -0.11358 0.69595 1.45271 1.48762 1.56248 1.59585 1.82600 2.20089 2.45344 2.73229 3.01576 3.08309 3.30027 3.48303 3.58721 3.66723 3.81579 3.82456 3.88384 3.90964 4.04971 4.20061 4.28806 4.32074 4.39587 4.44488 4.49719 4.57720 4.62959 4.73938 4.79114 4.81636 4.84890 4.92848 5.09200 5.12885 5.27281 5.36281 5.40962 5.41166 5.54977 5.62822 5.64304 5.91319 6.11972 6.26276 6.30192 6.75140 7.02430 7.05839 7.67500 8.30774 9.20922 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002712 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.489514 B =10321.995078 C =11230.996878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.174 3.826 6 N -0.619 5.619 7 C -0.249 4.249 8 H 0.083 0.917 9 C -0.061 4.061 10 N -0.948 5.948 11 Si 0.982 3.018 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.148 3.852 17 H 0.084 0.916 18 N -0.682 5.682 19 C 0.570 3.430 20 O -0.556 6.556 21 C 0.093 3.907 22 N -0.464 5.464 23 C 0.054 3.946 24 C -0.104 4.104 25 C -0.053 4.053 26 C -0.107 4.107 27 C -0.100 4.100 28 C -0.113 4.113 29 C -0.132 4.132 30 C -0.086 4.086 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.009 0.991 35 H 0.037 0.963 36 H 0.250 0.750 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.418 0.582 40 H 0.195 0.805 41 H 0.188 0.812 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.143 0.857 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -3.487 28.891 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.111 0.889 5 C 0.048 3.952 6 N -0.347 5.347 7 C -0.377 4.377 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.810 3.190 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.193 1.193 15 C 0.006 3.994 16 C 0.042 3.958 17 H 0.102 0.898 18 N -0.332 5.332 19 C 0.356 3.644 20 O -0.435 6.435 21 C -0.058 4.058 22 N -0.176 5.176 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.058 4.058 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.131 4.131 29 C -0.151 4.151 30 C -0.089 4.089 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.256 0.744 40 H 0.211 0.789 41 H 0.206 0.794 42 H 0.190 0.810 43 H 0.180 0.820 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.306 -3.636 27.836 28.074 hybrid contribution 0.405 0.287 -0.944 1.066 sum 0.099 -3.349 26.892 27.100 Atomic orbital electron populations 1.23003 0.79239 1.03983 1.00784 1.87879 1.21857 1.26866 1.94943 1.23481 0.93446 0.85269 0.95983 0.88910 1.21315 0.87841 0.94422 0.91582 1.44510 1.22407 1.65871 1.01925 1.19436 0.99210 1.32293 0.86777 0.89963 1.25686 0.97594 1.01870 1.00288 1.70134 1.14191 1.53441 1.21832 0.85048 0.77397 0.78011 0.78565 1.21321 1.21619 1.19297 1.21898 0.97442 0.95371 0.84722 1.21964 0.96121 0.98810 0.78901 0.89839 1.45578 1.22415 1.59821 1.05379 1.18190 0.82771 0.77907 0.85512 1.90599 1.29769 1.44497 1.78619 1.20979 0.93284 0.98864 0.92622 1.67187 1.18858 1.11213 1.20309 1.22830 1.00950 0.99130 0.86315 1.22665 0.92057 0.94202 1.03368 1.18595 0.97170 0.98349 0.91701 1.21410 0.93305 0.97295 1.00423 1.21471 0.98061 0.96770 0.95569 1.21435 0.99300 0.98730 0.93666 1.22046 0.93639 0.96507 1.02900 1.18881 0.96431 0.99633 0.93984 0.87942 0.92017 0.94342 0.97272 0.94535 0.94099 0.94563 0.94142 0.74395 0.78868 0.79444 0.81005 0.82000 0.83869 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -15.05 10.44 -148.98 -1.56 -16.60 16 3 C 0.08 3.07 3.08 31.78 0.10 3.17 16 4 H 0.09 3.17 7.68 -2.39 -0.02 3.15 16 5 C 0.17 8.98 5.18 86.73 0.45 9.43 16 6 N -0.62 -33.65 3.40 -691.87 -2.35 -36.00 16 7 C -0.25 -14.53 10.27 84.03 0.86 -13.67 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 9 C -0.06 -3.56 5.46 84.86 0.46 -3.09 16 10 N -0.95 -57.76 10.41 21.65 0.23 -57.54 16 11 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.13 6.01 6.93 86.85 0.60 6.61 16 16 C 0.15 5.94 3.09 46.39 0.14 6.09 16 17 H 0.08 3.78 7.63 -2.38 -0.02 3.76 16 18 N -0.68 -22.67 5.20 -438.71 -2.28 -24.95 16 19 C 0.57 19.76 7.78 86.82 0.68 20.44 16 20 O -0.56 -22.29 13.13 -3.85 -0.05 -22.34 16 21 C 0.09 2.69 6.81 42.43 0.29 2.98 16 22 N -0.46 -11.28 9.52 -184.95 -1.76 -13.04 16 23 C 0.05 0.88 11.06 84.30 0.93 1.81 16 24 C -0.10 -1.33 9.88 22.47 0.22 -1.10 16 25 C -0.05 -0.97 5.75 -21.29 -0.12 -1.09 16 26 C -0.11 -1.33 9.82 22.30 0.22 -1.11 16 27 C -0.10 -1.30 9.95 22.07 0.22 -1.08 16 28 C -0.11 -2.16 9.95 22.08 0.22 -1.94 16 29 C -0.13 -3.54 9.23 22.26 0.21 -3.34 16 30 C -0.09 -2.28 5.76 -21.14 -0.12 -2.40 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.01 0.53 7.72 -2.39 -0.02 0.51 16 35 H 0.04 2.05 7.10 -2.39 -0.02 2.03 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.42 11.95 7.90 -92.71 -0.73 11.22 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.14 4.69 4.96 -3.01 -0.01 4.68 16 Total: -1.00 -78.14 373.93 1.13 -77.01 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.29 Total: 20.94 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.59 Total: 23.64 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -6.17 Total: -131.53 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.61 Total: -38.94 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.14 1.13 -77.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082075396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.889 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds