Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00179 * 2 1 4 4 H 1.08999 * 110.64625 * 26.85315 * 3 2 1 5 5 C 1.54341 * 111.00175 * 263.77918 * 3 2 1 6 6 N 1.47017 * 107.26684 * 219.60367 * 5 3 2 7 7 C 1.36933 * 125.64864 * 178.85302 * 6 5 3 8 8 H 1.08007 * 120.00313 * 183.11497 * 7 6 5 9 9 C 1.38816 * 120.00088 * 3.10590 * 7 6 5 10 10 N 1.31618 * 120.00128 * 210.74281 * 9 7 6 11 11 Si 1.86796 * 119.99613 * 30.74515 * 9 7 6 12 12 H 1.48500 * 109.47236 * 275.68360 * 11 9 7 13 13 H 1.48503 * 109.47013 * 155.68086 * 11 9 7 14 14 H 1.48496 * 109.47370 * 35.68125 * 11 9 7 15 15 C 1.47426 * 108.70545 * 358.58366 * 6 5 3 16 16 C 1.54919 * 104.82965 * 24.35746 * 15 6 5 17 17 H 1.08996 * 111.00200 * 81.06748 * 16 15 6 18 18 N 1.46496 * 111.00137 * 204.91677 * 16 15 6 19 19 C 1.34777 * 120.00364 * 273.54583 * 18 16 15 20 20 O 1.21586 * 119.99574 * 0.02562 * 19 18 16 21 21 C 1.47563 * 120.00277 * 180.02562 * 19 18 16 22 22 C 1.38701 * 120.43356 * 6.23301 * 21 19 18 23 23 C 1.39004 * 120.74973 * 179.67897 * 22 21 19 24 24 C 1.36339 * 121.18955 * 0.65261 * 23 22 21 25 25 C 1.40358 * 119.93039 * 359.65231 * 24 23 22 26 26 C 1.40686 * 122.10015 * 180.02562 * 25 24 23 27 27 C 1.36259 * 118.66427 * 179.97438 * 26 25 24 28 28 N 1.32515 * 121.83947 * 0.02562 * 27 26 25 29 29 C 1.31307 * 122.72234 * 359.97438 * 28 27 26 30 30 C 1.40138 * 119.92069 * 0.02562 * 29 28 27 31 31 H 1.08992 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46660 * 300.00692 * 1 2 3 33 33 H 1.09004 * 109.46681 * 59.99719 * 1 2 3 34 34 H 1.09000 * 109.99008 * 100.12437 * 5 3 2 35 35 H 1.09000 * 109.77933 * 338.95909 * 5 3 2 36 36 H 0.97000 * 120.00192 * 5.09275 * 10 9 7 37 37 H 1.08995 * 110.36946 * 143.19611 * 15 6 5 38 38 H 1.08998 * 110.37075 * 265.52179 * 15 6 5 39 39 H 0.97001 * 120.00239 * 93.54952 * 18 16 15 40 40 H 1.08001 * 119.62603 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.40400 * 180.30220 * 23 22 21 42 42 H 1.08003 * 120.03642 * 179.67693 * 24 23 22 43 43 H 1.07998 * 120.66872 * 359.97438 * 26 25 24 44 44 H 1.08001 * 119.08284 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.04118 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0267 0.4607 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4498 -1.3550 7 6 4.3517 2.9802 -2.4156 8 1 5.3190 3.4351 -2.2609 9 6 3.8028 2.9330 -3.6898 10 7 4.5888 2.8531 -4.7425 11 14 1.9486 2.9831 -3.9102 12 1 1.3950 1.6133 -3.7598 13 1 1.6248 3.5021 -5.2634 14 1 1.3517 3.8736 -2.8826 15 6 4.0972 2.4946 0.0544 16 6 3.3817 1.2956 0.7256 17 1 3.9172 0.3654 0.5365 18 7 3.2165 1.5210 2.1637 19 6 4.2042 1.1839 3.0165 20 8 5.2326 0.6933 2.5922 21 6 4.0376 1.4104 4.4651 22 6 2.8233 1.8482 4.9727 23 6 2.6571 2.0573 6.3368 24 6 3.6817 1.8521 7.2126 25 6 4.9292 1.4149 6.7408 26 6 6.0171 1.1882 7.6036 27 6 7.1969 0.7636 7.0702 28 7 7.3431 0.5612 5.7688 29 6 6.3710 0.7528 4.9071 30 6 5.1167 1.1896 5.3540 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6129 2.4181 -1.8233 35 1 2.4706 0.8723 -2.0759 36 1 5.5465 2.7528 -4.6262 37 1 5.1787 2.3787 0.1247 38 1 3.7843 3.4305 0.5171 39 1 2.3962 1.9127 2.5022 40 1 1.9959 2.0234 4.3010 41 1 1.7008 2.3938 6.7090 42 1 3.5334 2.0253 8.2683 43 1 5.9192 1.3475 8.6673 44 1 8.0366 0.5879 7.7263 45 1 6.5379 0.5739 3.8551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082289990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 25.487633 kcal Electronic energy + Delta-G solvation = -29318.013004 eV Core-core repulsion = 25302.205886 eV Total energy + Delta-G solvation = -4015.807118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33689 -39.82127 -38.51992 -37.46407 -36.26846 -34.45066 -33.22924 -32.12726 -31.47970 -30.22744 -28.99177 -27.86769 -26.38172 -25.07566 -24.08975 -23.76648 -23.09407 -21.16964 -20.91578 -20.28873 -18.43131 -18.11191 -17.47377 -17.09035 -16.68368 -16.56417 -15.99964 -15.50644 -15.21614 -15.08232 -14.89586 -14.51128 -14.35059 -14.08967 -13.99274 -13.81748 -13.41663 -13.22698 -13.00352 -12.69588 -12.42153 -12.38953 -12.21712 -11.95048 -11.90270 -11.80664 -11.31357 -11.15807 -10.66878 -10.44651 -10.31216 -10.02031 -9.87511 -9.55605 -9.48490 -9.47670 -9.28631 -9.02290 -8.46415 -8.38667 -7.16202 -6.39514 -3.18712 -0.19945 0.56857 1.36549 2.45535 2.89229 3.07409 3.39599 3.46730 3.65084 3.77073 3.85072 4.16425 4.22667 4.33329 4.45427 4.53875 4.60244 4.60801 4.71908 4.73593 4.94289 4.99398 5.08796 5.22277 5.24032 5.30559 5.39129 5.40013 5.41501 5.45587 5.59224 5.62459 5.72761 5.75278 5.79700 5.82184 5.97339 6.17573 6.25201 6.31461 6.48205 6.49175 6.55941 6.65781 7.29729 7.35965 7.61237 7.83040 8.09037 8.30748 8.98814 9.53809 10.17526 11.09622 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002869 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.475120 B = 9757.596636 C =10758.903554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.073 0.927 5 C 0.100 3.900 6 N -0.602 5.602 7 C -0.336 4.336 8 H 0.083 0.917 9 C -0.011 4.011 10 N -0.906 5.906 11 Si 1.048 2.952 12 H -0.292 1.292 13 H -0.297 1.297 14 H -0.294 1.294 15 C 0.131 3.869 16 C 0.134 3.866 17 H 0.113 0.887 18 N -0.706 5.706 19 C 0.560 3.440 20 O -0.523 6.523 21 C -0.093 4.093 22 C -0.081 4.081 23 C -0.107 4.107 24 C -0.088 4.088 25 C -0.030 4.030 26 C -0.166 4.166 27 C 0.079 3.921 28 N -0.489 5.489 29 C 0.148 3.852 30 C -0.080 4.080 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.266 0.734 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.397 0.603 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.152 0.848 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -2.687 26.702 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.013 3.987 4 H 0.091 0.909 5 C -0.026 4.026 6 N -0.330 5.330 7 C -0.462 4.462 8 H 0.101 0.899 9 C -0.213 4.213 10 N -0.546 5.546 11 Si 0.881 3.119 12 H -0.219 1.219 13 H -0.224 1.224 14 H -0.223 1.223 15 C 0.004 3.996 16 C 0.029 3.971 17 H 0.131 0.869 18 N -0.357 5.357 19 C 0.348 3.652 20 O -0.401 6.401 21 C -0.098 4.098 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.107 4.107 25 C -0.035 4.035 26 C -0.186 4.186 27 C -0.064 4.064 28 N -0.197 5.197 29 C -0.021 4.021 30 C -0.083 4.083 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.232 0.768 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.526 -3.402 24.979 26.309 hybrid contribution -0.525 0.827 1.814 2.062 sum -8.050 -2.575 26.793 28.095 Atomic orbital electron populations 1.22806 0.81316 1.02671 0.99933 1.87960 1.19439 1.26915 1.94900 1.23395 0.93684 0.84650 0.96952 0.90947 1.22071 0.89562 0.96850 0.94122 1.44611 1.20461 1.65770 1.02195 1.20023 1.01632 1.38990 0.85576 0.89909 1.25637 1.06153 0.98946 0.90571 1.70873 1.06108 1.47050 1.30528 0.84103 0.77364 0.76238 0.74229 1.21936 1.22439 1.22251 1.21843 0.98626 0.93610 0.85553 1.22434 0.95810 1.01626 0.77199 0.86936 1.45794 1.18955 1.63601 1.07307 1.18033 0.83654 0.78253 0.85303 1.90613 1.27285 1.43954 1.78208 1.19929 0.94364 1.02524 0.93003 1.21432 0.96254 0.96295 0.96045 1.20896 0.99584 0.99320 0.92791 1.21160 0.91683 0.97485 1.00329 1.18166 0.94835 0.98022 0.92458 1.21865 0.93644 1.02664 1.00395 1.22357 0.96838 0.95263 0.91942 1.67699 1.33719 1.14931 1.03344 1.24673 0.86433 0.89092 1.01925 1.18868 0.95599 1.01149 0.92668 0.89638 0.94314 0.93746 0.94827 0.92392 0.92360 0.92165 0.95621 0.76773 0.84997 0.84756 0.84707 0.84426 0.83035 0.78235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.43 16 2 O -0.37 -5.91 10.45 -35.23 -0.37 -6.27 16 3 C 0.07 1.19 3.05 -24.89 -0.08 1.11 16 4 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 5 C 0.10 2.16 4.64 -3.06 -0.01 2.15 16 6 N -0.60 -14.74 3.34 -170.06 -0.57 -15.31 16 7 C -0.34 -9.62 10.41 -15.06 -0.16 -9.78 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 9 C -0.01 -0.33 5.42 -17.43 -0.09 -0.43 16 10 N -0.91 -28.28 13.70 55.49 0.76 -27.52 16 11 Si 1.05 26.15 24.65 -169.99 -4.19 21.96 16 12 H -0.29 -6.86 6.52 56.52 0.37 -6.50 16 13 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.29 -6.92 6.68 56.52 0.38 -6.54 16 15 C 0.13 2.66 6.93 -2.52 -0.02 2.64 16 16 C 0.13 2.27 3.04 -65.78 -0.20 2.07 16 17 H 0.11 2.16 7.73 -51.93 -0.40 1.76 16 18 N -0.71 -9.15 5.18 -52.76 -0.27 -9.43 16 19 C 0.56 7.89 7.73 -12.46 -0.10 7.80 16 20 O -0.52 -9.09 13.23 5.29 0.07 -9.02 16 21 C -0.09 -1.08 5.90 -104.67 -0.62 -1.70 16 22 C -0.08 -0.67 9.51 -39.13 -0.37 -1.04 16 23 C -0.11 -0.71 9.93 -39.98 -0.40 -1.11 16 24 C -0.09 -0.65 9.79 -39.47 -0.39 -1.03 16 25 C -0.03 -0.30 5.75 -106.83 -0.61 -0.91 16 26 C -0.17 -1.47 9.88 -39.37 -0.39 -1.86 16 27 C 0.08 0.83 11.07 -17.97 -0.20 0.63 16 28 N -0.49 -6.70 10.30 -13.22 -0.14 -6.84 16 29 C 0.15 2.11 10.49 -17.06 -0.18 1.93 16 30 C -0.08 -1.00 5.76 -106.59 -0.61 -1.61 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.75 4.16 -51.93 -0.22 0.53 16 35 H 0.06 1.37 7.29 -51.93 -0.38 1.00 16 36 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.77 6.59 -40.82 -0.27 3.50 16 40 H 0.13 0.74 6.43 -52.49 -0.34 0.40 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.20 3.13 4.98 -52.49 -0.26 2.87 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -35.31 365.85 -8.22 -43.52 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.70 Total: 3.11 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.33 Total: 0.28 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.22 Total: -59.10 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.30 Total: -15.29 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -4.19 Total: 21.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.31 -8.22 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082289990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.011 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds