Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00179 * 2 1 4 4 H 1.08999 * 110.64625 * 26.85315 * 3 2 1 5 5 C 1.54341 * 111.00175 * 263.77918 * 3 2 1 6 6 N 1.47017 * 107.26684 * 219.60367 * 5 3 2 7 7 C 1.36933 * 125.64864 * 178.85302 * 6 5 3 8 8 H 1.08007 * 120.00313 * 183.11497 * 7 6 5 9 9 C 1.38816 * 120.00088 * 3.10590 * 7 6 5 10 10 N 1.31618 * 120.00128 * 210.74281 * 9 7 6 11 11 Si 1.86796 * 119.99613 * 30.74515 * 9 7 6 12 12 H 1.48500 * 109.47236 * 275.68360 * 11 9 7 13 13 H 1.48503 * 109.47013 * 155.68086 * 11 9 7 14 14 H 1.48496 * 109.47370 * 35.68125 * 11 9 7 15 15 C 1.47426 * 108.70545 * 358.58366 * 6 5 3 16 16 C 1.54919 * 104.82965 * 24.35746 * 15 6 5 17 17 H 1.08996 * 111.00200 * 81.06748 * 16 15 6 18 18 N 1.46496 * 111.00137 * 204.91677 * 16 15 6 19 19 C 1.34777 * 120.00364 * 273.54583 * 18 16 15 20 20 O 1.21586 * 119.99574 * 0.02562 * 19 18 16 21 21 C 1.47563 * 120.00277 * 180.02562 * 19 18 16 22 22 C 1.38701 * 120.43356 * 6.23301 * 21 19 18 23 23 C 1.39004 * 120.74973 * 179.67897 * 22 21 19 24 24 C 1.36339 * 121.18955 * 0.65261 * 23 22 21 25 25 C 1.40358 * 119.93039 * 359.65231 * 24 23 22 26 26 C 1.40686 * 122.10015 * 180.02562 * 25 24 23 27 27 C 1.36259 * 118.66427 * 179.97438 * 26 25 24 28 28 N 1.32515 * 121.83947 * 0.02562 * 27 26 25 29 29 C 1.31307 * 122.72234 * 359.97438 * 28 27 26 30 30 C 1.40138 * 119.92069 * 0.02562 * 29 28 27 31 31 H 1.08992 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46660 * 300.00692 * 1 2 3 33 33 H 1.09004 * 109.46681 * 59.99719 * 1 2 3 34 34 H 1.09000 * 109.99008 * 100.12437 * 5 3 2 35 35 H 1.09000 * 109.77933 * 338.95909 * 5 3 2 36 36 H 0.97000 * 120.00192 * 5.09275 * 10 9 7 37 37 H 1.08995 * 110.36946 * 143.19611 * 15 6 5 38 38 H 1.08998 * 110.37075 * 265.52179 * 15 6 5 39 39 H 0.97001 * 120.00239 * 93.54952 * 18 16 15 40 40 H 1.08001 * 119.62603 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.40400 * 180.30220 * 23 22 21 42 42 H 1.08003 * 120.03642 * 179.67693 * 24 23 22 43 43 H 1.07998 * 120.66872 * 359.97438 * 26 25 24 44 44 H 1.08001 * 119.08284 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.04118 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0267 0.4607 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4498 -1.3550 7 6 4.3517 2.9802 -2.4156 8 1 5.3190 3.4351 -2.2609 9 6 3.8028 2.9330 -3.6898 10 7 4.5888 2.8531 -4.7425 11 14 1.9486 2.9831 -3.9102 12 1 1.3950 1.6133 -3.7598 13 1 1.6248 3.5021 -5.2634 14 1 1.3517 3.8736 -2.8826 15 6 4.0972 2.4946 0.0544 16 6 3.3817 1.2956 0.7256 17 1 3.9172 0.3654 0.5365 18 7 3.2165 1.5210 2.1637 19 6 4.2042 1.1839 3.0165 20 8 5.2326 0.6933 2.5922 21 6 4.0376 1.4104 4.4651 22 6 2.8233 1.8482 4.9727 23 6 2.6571 2.0573 6.3368 24 6 3.6817 1.8521 7.2126 25 6 4.9292 1.4149 6.7408 26 6 6.0171 1.1882 7.6036 27 6 7.1969 0.7636 7.0702 28 7 7.3431 0.5612 5.7688 29 6 6.3710 0.7528 4.9071 30 6 5.1167 1.1896 5.3540 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6129 2.4181 -1.8233 35 1 2.4706 0.8723 -2.0759 36 1 5.5465 2.7528 -4.6262 37 1 5.1787 2.3787 0.1247 38 1 3.7843 3.4305 0.5171 39 1 2.3962 1.9127 2.5022 40 1 1.9959 2.0234 4.3010 41 1 1.7008 2.3938 6.7090 42 1 3.5334 2.0253 8.2683 43 1 5.9192 1.3475 8.6673 44 1 8.0366 0.5879 7.7263 45 1 6.5379 0.5739 3.8551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082289990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = -1.937195 kcal Electronic energy + Delta-G solvation = -29319.202233 eV Core-core repulsion = 25302.205886 eV Total energy + Delta-G solvation = -4016.996348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16749 -40.98816 -39.76676 -38.21474 -37.68985 -35.87254 -34.28695 -33.85305 -32.19334 -31.32968 -30.35967 -29.36910 -27.47366 -26.18482 -25.34930 -24.48237 -24.22216 -22.75253 -22.14125 -21.71218 -19.78841 -19.12809 -18.82963 -18.15795 -17.80703 -17.57096 -17.10233 -16.58172 -16.38640 -16.13885 -15.88182 -15.83234 -15.53524 -15.32428 -15.12318 -15.00607 -14.66267 -14.56802 -14.32606 -13.75138 -13.71864 -13.55340 -13.26246 -13.11048 -13.05313 -12.99666 -12.57005 -12.42114 -12.36109 -11.94959 -11.69474 -11.34238 -11.20514 -11.04719 -10.74118 -10.66660 -10.41255 -10.26006 -10.18247 -9.24135 -9.11222 -8.74441 -5.45029 -0.93288 -0.12886 0.55135 1.37600 1.48822 1.66750 1.68292 1.81862 2.18775 2.53482 2.56436 2.94417 3.06262 3.28025 3.34277 3.49452 3.60985 3.68190 3.71046 3.74487 3.82095 3.86963 3.94185 4.18335 4.19558 4.28115 4.38929 4.48396 4.57649 4.58520 4.65566 4.68781 4.75672 4.79333 4.79481 4.86528 4.89225 4.90426 5.06349 5.18853 5.28631 5.33883 5.51201 5.66092 5.78084 6.02211 6.17192 6.36572 6.74406 6.98095 7.09885 7.38913 8.02090 8.75933 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002869 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.475120 B = 9757.596636 C =10758.903554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.394 6.394 3 C 0.093 3.907 4 H 0.119 0.881 5 C 0.091 3.909 6 N -0.623 5.623 7 C -0.334 4.334 8 H 0.046 0.954 9 C -0.069 4.069 10 N -0.942 5.942 11 Si 1.096 2.904 12 H -0.270 1.270 13 H -0.303 1.303 14 H -0.264 1.264 15 C 0.130 3.870 16 C 0.152 3.848 17 H 0.080 0.920 18 N -0.689 5.689 19 C 0.557 3.443 20 O -0.570 6.570 21 C -0.132 4.132 22 C -0.053 4.053 23 C -0.106 4.106 24 C -0.071 4.071 25 C -0.051 4.051 26 C -0.140 4.140 27 C 0.049 3.951 28 N -0.517 5.517 29 C 0.107 3.893 30 C -0.094 4.094 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.250 0.750 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.419 0.581 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.182 0.818 44 H 0.176 0.824 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -1.798 31.608 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.312 6.312 3 C 0.034 3.966 4 H 0.137 0.863 5 C -0.034 4.034 6 N -0.351 5.351 7 C -0.461 4.461 8 H 0.064 0.936 9 C -0.264 4.264 10 N -0.584 5.584 11 Si 0.922 3.078 12 H -0.196 1.196 13 H -0.231 1.231 14 H -0.190 1.190 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.098 0.902 18 N -0.342 5.342 19 C 0.347 3.653 20 O -0.451 6.451 21 C -0.137 4.137 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.088 4.088 25 C -0.056 4.056 26 C -0.159 4.159 27 C -0.095 4.095 28 N -0.226 5.226 29 C -0.062 4.062 30 C -0.097 4.097 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.258 0.742 40 H 0.181 0.819 41 H 0.197 0.803 42 H 0.193 0.807 43 H 0.199 0.801 44 H 0.193 0.807 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.882 -2.514 29.951 32.701 hybrid contribution 1.196 0.542 0.472 1.395 sum -11.686 -1.972 30.423 32.650 Atomic orbital electron populations 1.23155 0.78691 1.04436 1.01573 1.87958 1.22308 1.26177 1.94762 1.23153 0.93887 0.86253 0.93312 0.86348 1.22242 0.88076 0.95518 0.97602 1.44578 1.21953 1.65767 1.02833 1.19886 1.00704 1.38127 0.87418 0.93605 1.27061 1.10258 0.98750 0.90349 1.70995 1.05390 1.50383 1.31604 0.83508 0.71824 0.77880 0.74618 1.19611 1.23083 1.18958 1.21925 0.97338 0.96194 0.84168 1.21829 0.95886 0.98310 0.79496 0.90200 1.45462 1.19799 1.63708 1.05195 1.18603 0.82855 0.77119 0.86760 1.90622 1.29232 1.45934 1.79263 1.19680 0.96180 1.06954 0.90851 1.21907 0.95082 0.92458 0.97726 1.21416 1.01250 0.98186 0.91614 1.21678 0.89973 0.94612 1.02561 1.18556 0.96864 0.98905 0.91322 1.22347 0.92190 0.99135 1.02247 1.22821 0.98940 0.96778 0.90950 1.67548 1.34419 1.15492 1.05145 1.24228 0.88356 0.92591 1.00988 1.18968 0.94905 1.01328 0.94466 0.88037 0.90836 0.93826 0.93911 0.95146 0.94095 0.95402 0.93450 0.74196 0.81875 0.80311 0.80655 0.80052 0.80653 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.39 -11.38 10.45 -148.98 -1.56 -12.93 16 3 C 0.09 2.83 3.05 31.79 0.10 2.93 16 4 H 0.12 2.55 7.68 -2.39 -0.02 2.53 16 5 C 0.09 3.84 4.64 86.74 0.40 4.25 16 6 N -0.62 -31.28 3.34 -691.95 -2.31 -33.59 16 7 C -0.33 -20.09 10.41 84.04 0.87 -19.22 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 C -0.07 -4.20 5.42 84.86 0.46 -3.74 16 10 N -0.94 -61.72 13.70 21.65 0.30 -61.42 16 11 Si 1.10 52.85 24.65 68.60 1.69 54.54 16 12 H -0.27 -11.99 6.52 99.48 0.65 -11.34 16 13 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 14 H -0.26 -11.31 6.68 99.48 0.66 -10.64 16 15 C 0.13 5.46 6.93 86.86 0.60 6.06 16 16 C 0.15 5.13 3.04 46.39 0.14 5.27 16 17 H 0.08 3.25 7.73 -2.39 -0.02 3.24 16 18 N -0.69 -16.94 5.18 -439.08 -2.27 -19.22 16 19 C 0.56 16.14 7.73 86.70 0.67 16.81 16 20 O -0.57 -21.98 13.23 -3.99 -0.05 -22.03 16 21 C -0.13 -2.92 5.90 -19.89 -0.12 -3.04 16 22 C -0.05 -0.63 9.51 22.56 0.21 -0.41 16 23 C -0.11 -0.73 9.93 22.01 0.22 -0.51 16 24 C -0.07 -0.62 9.79 22.34 0.22 -0.40 16 25 C -0.05 -0.89 5.75 -21.30 -0.12 -1.01 16 26 C -0.14 -2.08 9.88 22.41 0.22 -1.86 16 27 C 0.05 1.00 11.07 84.13 0.93 1.93 16 28 N -0.52 -15.35 10.30 -195.73 -2.02 -17.37 16 29 C 0.11 3.38 10.49 85.23 0.89 4.28 16 30 C -0.09 -2.36 5.76 -21.14 -0.12 -2.49 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 0.88 8.11 -2.38 -0.02 0.86 16 33 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.04 1.77 4.16 -2.39 -0.01 1.76 16 35 H 0.03 1.45 7.29 -2.39 -0.02 1.43 16 36 H 0.25 16.59 8.73 -92.71 -0.81 15.78 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.42 6.27 6.59 -92.71 -0.61 5.65 16 40 H 0.16 0.81 6.43 -2.91 -0.02 0.79 16 41 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16 42 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 43 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 44 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 45 H 0.17 6.21 4.98 -2.92 -0.01 6.19 16 Total: -1.00 -88.68 365.85 0.88 -87.80 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.29 Total: 13.85 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.81 Total: 10.37 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -6.30 Total: -131.60 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.61 Total: -34.97 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 1.69 Total: 54.54 kcal Total: -88.68 0.88 -87.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082289990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.862 kcal (2) G-P(sol) polarization free energy of solvation -88.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds