Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00258 * 2 1 4 4 H 1.08998 * 110.91398 * 26.09645 * 3 2 1 5 5 C 1.55122 * 111.16327 * 262.17025 * 3 2 1 6 6 N 1.47421 * 104.94510 * 205.12861 * 5 3 2 7 7 C 1.36931 * 125.65217 * 204.03487 * 6 5 3 8 8 H 1.07995 * 120.00520 * 179.97438 * 7 6 5 9 9 C 1.38813 * 119.99734 * 359.96295 * 7 6 5 10 10 N 1.31610 * 120.00221 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47012 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46863 * 119.99780 * 11 9 7 14 14 H 1.48502 * 109.46978 * 240.00381 * 11 9 7 15 15 C 1.47025 * 108.69935 * 24.00293 * 6 5 3 16 16 C 1.54324 * 107.27206 * 358.94044 * 15 6 5 17 17 H 1.09000 * 110.72054 * 96.34854 * 16 15 6 18 18 N 1.46500 * 110.71892 * 219.44012 * 16 15 6 19 19 C 1.34773 * 120.00431 * 271.16105 * 18 16 15 20 20 O 1.21553 * 119.99919 * 359.97438 * 19 18 16 21 21 C 1.47884 * 119.99999 * 179.72339 * 19 18 16 22 22 C 1.40594 * 119.73259 * 0.02562 * 21 19 18 23 23 C 1.35844 * 120.95417 * 179.74913 * 22 21 19 24 24 C 1.40490 * 119.87807 * 0.52034 * 23 22 21 25 25 C 1.40490 * 121.83727 * 179.69930 * 24 23 22 26 26 N 1.31218 * 119.93881 * 180.02562 * 25 24 23 27 27 C 1.32548 * 122.80397 * 359.97438 * 26 25 24 28 28 C 1.36227 * 121.85063 * 0.02562 * 27 26 25 29 29 C 1.40756 * 118.67238 * 359.97438 * 28 27 26 30 30 C 1.38539 * 119.72799 * 180.26951 * 21 19 18 31 31 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47185 * 299.99921 * 1 2 3 33 33 H 1.09001 * 109.46731 * 59.99960 * 1 2 3 34 34 H 1.09003 * 110.41949 * 86.20244 * 5 3 2 35 35 H 1.09004 * 110.20569 * 323.95437 * 5 3 2 36 36 H 0.97009 * 120.00235 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.88378 * 239.51757 * 15 6 5 38 38 H 1.09004 * 110.00841 * 118.42891 * 15 6 5 39 39 H 0.97000 * 119.99456 * 91.15667 * 18 16 15 40 40 H 1.08007 * 119.52008 * 0.02562 * 22 21 19 41 41 H 1.08003 * 120.06390 * 180.27693 * 23 22 21 42 42 H 1.07991 * 120.02646 * 0.02562 * 25 24 23 43 43 H 1.07997 * 119.07615 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.66363 * 179.97438 * 28 27 26 45 45 H 1.08004 * 120.36370 * 359.96478 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3333 2.0328 0.4479 5 6 2.4181 1.7368 -1.4331 6 7 3.4967 2.7232 -1.2407 7 6 3.8518 3.7014 -2.1307 8 1 4.6597 4.3783 -1.8954 9 6 3.1734 3.8228 -3.3357 10 7 2.1893 2.9975 -3.6230 11 14 3.6572 5.1577 -4.5496 12 1 4.7845 5.9481 -3.9929 13 1 4.0746 4.5339 -5.8309 14 1 2.4968 6.0528 -4.7896 15 6 4.1276 2.4831 0.0654 16 6 3.3824 1.3032 0.7242 17 1 3.9105 0.3663 0.5470 18 7 3.2108 1.5356 2.1605 19 6 4.1627 1.1350 3.0264 20 8 5.1634 0.5804 2.6158 21 6 3.9923 1.3751 4.4756 22 6 2.8348 2.0213 4.9440 23 6 2.6504 2.2499 6.2703 24 6 3.6307 1.8476 7.1928 25 6 3.4853 2.0690 8.5725 26 7 4.4247 1.6781 9.4010 27 6 5.5311 1.0700 8.9970 28 6 5.7682 0.8086 7.6812 29 6 4.8056 1.1983 6.7311 30 6 4.9769 0.9660 5.3602 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.5730 2.1944 -1.9475 35 1 2.7853 0.8778 -1.9948 36 1 1.7149 3.0825 -4.4649 37 1 4.0385 3.3726 0.6892 38 1 5.1789 2.2288 -0.0693 39 1 2.4121 1.9778 2.4882 40 1 2.0793 2.3365 4.2394 41 1 1.7536 2.7435 6.6147 42 1 2.6012 2.5604 8.9507 43 1 6.2651 0.7735 9.7315 44 1 6.6766 0.3123 7.3733 45 1 5.8665 0.4728 4.9970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082303767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 12.998016 kcal Electronic energy + Delta-G solvation = -28720.488469 eV Core-core repulsion = 24704.139761 eV Total energy + Delta-G solvation = -4016.348708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22109 -39.85764 -38.29175 -37.15804 -35.96696 -34.26558 -33.33306 -32.16296 -31.32607 -29.97030 -28.86805 -27.30876 -26.13553 -25.27363 -24.15065 -24.02616 -22.60616 -21.25324 -20.66852 -20.03592 -18.58880 -17.99241 -17.19771 -16.88446 -16.51180 -16.28494 -15.51956 -15.28272 -15.05771 -14.96395 -14.50654 -14.43936 -14.29349 -14.04499 -14.00704 -13.92217 -13.26524 -13.17300 -12.99049 -12.66525 -12.34690 -12.25856 -11.91694 -11.53451 -11.45349 -11.32284 -11.07389 -10.87633 -10.81779 -10.60650 -10.23216 -10.05769 -9.94078 -9.87060 -9.82445 -9.45553 -9.15571 -8.76271 -8.74042 -8.45370 -6.94554 -5.73874 -3.16932 -0.11430 0.34660 1.50547 2.29078 3.10816 3.22627 3.35837 3.41816 3.44207 3.76395 4.03123 4.05991 4.15155 4.32506 4.39443 4.44892 4.54431 4.65139 4.80812 4.86631 5.12804 5.23192 5.31607 5.36068 5.36811 5.43922 5.54652 5.56597 5.62435 5.63397 5.66823 5.76958 5.89593 5.90869 5.95030 6.02757 6.14242 6.23652 6.35609 6.38965 6.62967 6.80950 7.20441 7.49711 7.56062 7.58601 7.68200 7.74564 8.19992 8.24932 9.11863 9.72076 10.34204 11.30095 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002358 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.439658 B =11869.225548 C =12547.178564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.134 3.866 17 H 0.104 0.896 18 N -0.707 5.707 19 C 0.554 3.446 20 O -0.531 6.531 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.091 4.091 24 C -0.099 4.099 25 C 0.143 3.857 26 N -0.485 5.485 27 C 0.071 3.929 28 C -0.143 4.143 29 C -0.034 4.034 30 C -0.044 4.044 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.027 0.973 36 H 0.253 0.747 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.397 0.603 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 -3.564 22.431 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.006 4.006 4 H 0.085 0.915 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.747 3.253 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.122 0.878 18 N -0.358 5.358 19 C 0.340 3.660 20 O -0.409 6.409 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.101 4.101 25 C -0.029 4.029 26 N -0.193 5.193 27 C -0.072 4.072 28 C -0.163 4.163 29 C -0.039 4.039 30 C -0.063 4.063 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.232 0.768 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.464 -3.979 22.825 23.215 hybrid contribution -0.242 0.907 -1.442 1.721 sum -1.706 -3.072 21.383 21.669 Atomic orbital electron populations 1.22715 0.81575 1.02006 0.99911 1.87856 1.19222 1.27631 1.95064 1.24074 0.92510 0.83806 1.00161 0.91487 1.22335 0.94597 0.92111 0.89324 1.44307 1.37089 1.35645 1.15766 1.19138 1.13781 1.06135 0.95949 0.90116 1.24810 0.98527 0.99385 0.97875 1.69754 1.24581 1.38722 1.24069 0.85957 0.77591 0.80726 0.80979 1.20445 1.21630 1.21698 1.21600 0.95897 0.93967 0.88190 1.22238 0.97006 1.00410 0.77357 0.87774 1.45936 1.22203 1.60315 1.07325 1.18199 0.83375 0.78880 0.85508 1.90795 1.28659 1.42229 1.79186 1.20119 0.95963 1.01229 0.93738 1.21014 0.96531 0.97305 0.96269 1.20875 0.98488 0.99267 0.92420 1.19162 0.95269 0.99949 0.95729 1.23255 0.97069 0.94535 0.88010 1.67388 1.01885 1.10006 1.40015 1.22200 0.94634 0.95818 0.94547 1.22019 0.99684 1.00667 0.93901 1.18152 0.94253 0.97652 0.93853 1.21461 0.98552 0.95700 0.90637 0.90258 0.94832 0.93476 0.86913 0.95487 0.93612 0.95218 0.94743 0.76798 0.85032 0.84238 0.81762 0.82814 0.84035 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.73 10.52 -35.23 -0.37 -7.10 16 3 C 0.05 1.00 3.17 -24.47 -0.08 0.93 16 4 H 0.07 1.13 7.69 -51.93 -0.40 0.74 16 5 C 0.14 3.39 5.63 -2.42 -0.01 3.37 16 6 N -0.60 -15.17 3.40 -169.94 -0.58 -15.74 16 7 C -0.22 -6.08 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 11 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.13 2.79 7.00 -3.06 -0.02 2.76 16 16 C 0.13 2.47 3.00 -66.10 -0.20 2.27 16 17 H 0.10 2.12 7.62 -51.93 -0.40 1.72 16 18 N -0.71 -10.31 5.06 -52.96 -0.27 -10.58 16 19 C 0.55 8.39 7.77 -12.31 -0.10 8.29 16 20 O -0.53 -9.97 15.99 5.32 0.09 -9.88 16 21 C -0.11 -1.26 5.87 -104.95 -0.62 -1.87 16 22 C -0.09 -0.84 9.44 -39.55 -0.37 -1.21 16 23 C -0.09 -0.70 9.77 -39.59 -0.39 -1.09 16 24 C -0.10 -0.90 5.75 -106.78 -0.61 -1.51 16 25 C 0.14 1.18 11.04 -16.97 -0.19 0.99 16 26 N -0.49 -4.70 10.29 -13.15 -0.14 -4.84 16 27 C 0.07 0.60 11.07 -17.97 -0.20 0.40 16 28 C -0.14 -1.22 9.88 -39.35 -0.39 -1.60 16 29 C -0.03 -0.34 5.74 -106.83 -0.61 -0.96 16 30 C -0.04 -0.50 9.38 -38.78 -0.36 -0.86 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.40 4.58 6.52 -40.82 -0.27 4.31 16 40 H 0.13 0.92 6.34 -52.48 -0.33 0.59 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.15 1.63 7.62 -52.48 -0.40 1.23 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -33.70 376.10 -9.23 -42.93 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.87 Total: 3.68 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -3.30 Total: 4.86 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.42 Total: -56.82 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -9.23 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082303767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.928 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds