Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 H 1.09000 * 110.64240 * 26.86230 * 3 2 1 5 5 C 1.54320 * 110.87434 * 263.61146 * 3 2 1 6 6 N 1.47024 * 107.27205 * 219.37440 * 5 3 2 7 7 C 1.36938 * 125.64837 * 178.99365 * 6 5 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 6 5 9 9 C 1.38808 * 119.99881 * 359.97438 * 7 6 5 10 10 N 1.31623 * 120.00453 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46807 * 89.99579 * 11 9 7 13 13 H 1.48494 * 109.47197 * 209.99702 * 11 9 7 14 14 H 1.48501 * 109.47015 * 329.99639 * 11 9 7 15 15 C 1.47463 * 108.72337 * 358.97565 * 6 5 3 16 16 C 1.54912 * 104.81383 * 24.06858 * 15 6 5 17 17 H 1.09000 * 111.00145 * 81.13483 * 16 15 6 18 18 N 1.46498 * 111.01095 * 204.95282 * 16 15 6 19 19 C 1.34776 * 119.99807 * 270.41990 * 18 16 15 20 20 O 1.21501 * 119.99864 * 0.02562 * 19 18 16 21 21 C 1.48274 * 120.00124 * 179.97438 * 19 18 16 22 22 C 1.40277 * 119.24014 * 179.97438 * 21 19 18 23 23 C 1.36506 * 119.81074 * 179.69543 * 22 21 19 24 24 C 1.40750 * 118.24962 * 0.28125 * 23 22 21 25 25 C 1.40420 * 121.28056 * 180.02562 * 24 23 22 26 26 C 1.36127 * 119.65235 * 179.97438 * 25 24 23 27 27 C 1.39436 * 120.91675 * 359.97438 * 26 25 24 28 28 C 1.35999 * 121.08198 * 359.97438 * 27 26 25 29 29 C 1.40827 * 119.73732 * 0.04520 * 28 27 26 30 30 N 1.31884 * 119.23872 * 0.27816 * 21 19 18 31 31 H 1.09004 * 109.46775 * 299.99706 * 1 2 3 32 32 H 1.08998 * 109.47296 * 59.99289 * 1 2 3 33 33 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.88222 * 338.79446 * 5 3 2 35 35 H 1.09004 * 109.88308 * 99.95701 * 5 3 2 36 36 H 0.97001 * 120.00313 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.35238 * 265.25475 * 15 6 5 38 38 H 1.09001 * 110.40880 * 142.91229 * 15 6 5 39 39 H 0.96993 * 119.99904 * 90.41167 * 18 16 15 40 40 H 1.08002 * 120.09636 * 359.97438 * 22 21 19 41 41 H 1.08002 * 120.87398 * 180.29904 * 23 22 21 42 42 H 1.08006 * 120.16832 * 359.96223 * 25 24 23 43 43 H 1.08005 * 119.54508 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.46267 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.13011 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0267 0.4609 5 6 2.3804 1.7426 -1.4330 6 7 3.6669 2.4501 -1.3549 7 6 4.3515 2.9808 -2.4155 8 1 5.2929 3.4843 -2.2530 9 6 3.8353 2.8715 -3.6994 10 7 2.6881 2.2574 -3.8976 11 14 4.7688 3.5961 -5.1462 12 1 5.6949 2.5752 -5.6990 13 1 3.8065 4.0127 -6.1976 14 1 5.5473 4.7763 -4.6919 15 6 4.0980 2.4942 0.0546 16 6 3.3817 1.2958 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2164 1.5209 2.1638 19 6 4.1770 1.1255 3.0225 20 8 5.1802 0.5828 2.6038 21 6 4.0101 1.3538 4.4780 22 6 5.0196 0.9354 5.3574 23 6 4.8808 1.1453 6.6991 24 6 3.7098 1.7779 7.1568 25 6 3.5014 2.0258 8.5231 26 6 2.3566 2.6404 8.9291 27 6 1.3859 3.0287 8.0065 28 6 1.5536 2.8061 6.6754 29 6 2.7240 2.1725 6.2150 30 7 2.9131 1.9402 4.9164 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.4774 0.8666 -2.0743 35 1 1.6137 2.4098 -1.8268 36 1 2.3276 2.1807 -4.7948 37 1 3.7857 3.4303 0.5174 38 1 5.1795 2.3775 0.1251 39 1 2.4157 1.9546 2.4979 40 1 5.9063 0.4525 4.9737 41 1 5.6496 0.8345 7.3911 42 1 4.2454 1.7302 9.2480 43 1 2.1979 2.8298 9.9805 44 1 0.4866 3.5150 8.3545 45 1 0.7916 3.1129 5.9742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082339692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 14.291241 kcal Electronic energy + Delta-G solvation = -28854.646504 eV Core-core repulsion = 24838.353874 eV Total energy + Delta-G solvation = -4016.292630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25344 -39.61995 -38.20055 -37.06440 -35.86971 -34.28209 -33.69311 -31.81418 -30.95087 -30.35484 -28.75371 -27.25024 -26.08405 -25.39697 -24.23420 -23.75472 -22.44965 -21.25062 -20.48166 -20.01983 -18.53584 -18.08114 -17.51795 -16.91364 -16.41165 -15.62699 -15.45998 -15.24856 -15.08973 -14.76792 -14.61622 -14.41104 -14.24383 -14.11225 -13.92337 -13.51464 -13.43616 -13.20579 -12.74524 -12.28921 -12.04404 -11.98653 -11.86997 -11.83525 -11.53832 -11.19779 -10.98567 -10.93146 -10.78744 -10.73642 -10.36514 -10.11267 -9.96028 -9.76853 -9.71453 -9.15859 -9.07239 -8.74349 -8.64513 -8.54938 -6.86545 -5.70966 -3.05952 -0.10448 0.36785 1.61129 2.23571 3.11907 3.14092 3.42729 3.47438 3.49233 3.81721 3.86390 4.16677 4.19627 4.40913 4.45641 4.52479 4.62254 4.78212 4.80838 4.99169 5.12720 5.15742 5.40008 5.43527 5.51016 5.58356 5.61714 5.64434 5.67358 5.71951 5.74654 5.87536 5.95532 5.96881 6.03376 6.07381 6.12871 6.19614 6.44082 6.53004 6.64315 6.86170 7.27549 7.36603 7.50339 7.71583 7.74876 7.89201 8.21906 8.31254 9.19809 9.79795 10.43067 11.40479 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002466 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.271952 B =11352.070627 C =11926.663503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.064 0.936 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.129 3.871 17 H 0.108 0.892 18 N -0.692 5.692 19 C 0.566 3.434 20 O -0.526 6.526 21 C 0.126 3.874 22 C -0.123 4.123 23 C -0.064 4.064 24 C -0.090 4.090 25 C -0.101 4.101 26 C -0.110 4.110 27 C -0.106 4.106 28 C -0.084 4.084 29 C 0.124 3.876 30 N -0.444 5.444 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.407 0.593 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -0.898 26.756 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.082 0.918 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.003 3.997 16 C 0.024 3.976 17 H 0.126 0.874 18 N -0.342 5.342 19 C 0.350 3.650 20 O -0.402 6.402 21 C -0.028 4.028 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.102 4.102 29 C 0.000 4.000 30 N -0.156 5.156 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.242 0.758 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.896 -1.153 25.624 25.944 hybrid contribution 0.380 0.553 0.002 0.672 sum -3.516 -0.600 25.626 25.873 Atomic orbital electron populations 1.22710 0.81717 1.02041 0.99778 1.87903 1.19116 1.27526 1.95035 1.23843 0.92851 0.84146 0.99433 0.91796 1.21556 0.88249 0.97216 0.88938 1.44268 1.21500 1.66334 1.00699 1.19076 1.02394 1.29331 0.84732 0.90127 1.24820 0.97433 1.00742 0.97399 1.69940 1.19246 1.47253 1.20573 0.86075 0.78607 0.78603 0.82213 1.21495 1.21689 1.20656 1.21836 0.97820 0.93770 0.86240 1.22503 0.96767 1.01214 0.77076 0.87429 1.45801 1.21768 1.59618 1.06974 1.17860 0.83645 0.79173 0.84350 1.90807 1.28748 1.42731 1.77876 1.21479 0.90716 0.95630 0.94960 1.21797 1.00244 0.99188 0.93149 1.21469 0.96181 0.95569 0.95729 1.18990 0.95507 0.99756 0.94942 1.21002 0.98166 0.98907 0.93863 1.20998 0.93813 0.97868 1.00129 1.20940 0.99484 0.99349 0.92805 1.20912 0.95819 0.97433 0.96086 1.18863 0.94851 0.98150 0.88096 1.67845 1.20800 1.11086 1.15831 0.94779 0.93634 0.90261 0.91898 0.93280 0.93665 0.95800 0.93012 0.75762 0.82962 0.83640 0.85046 0.85387 0.85082 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.18 10.44 -35.23 -0.37 -7.54 16 3 C 0.06 1.10 3.08 -24.90 -0.08 1.03 16 4 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 5 C 0.17 4.09 5.15 -3.07 -0.02 4.08 16 6 N -0.60 -15.71 3.40 -170.04 -0.58 -16.28 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 11 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.13 2.88 6.93 -2.51 -0.02 2.86 16 16 C 0.13 2.53 3.09 -65.78 -0.20 2.33 16 17 H 0.11 2.35 7.63 -51.93 -0.40 1.95 16 18 N -0.69 -11.37 5.20 -52.53 -0.27 -11.64 16 19 C 0.57 9.42 7.81 -12.13 -0.09 9.33 16 20 O -0.53 -10.22 15.97 5.37 0.09 -10.13 16 21 C 0.13 1.75 6.75 -82.95 -0.56 1.19 16 22 C -0.12 -1.41 9.54 -39.44 -0.38 -1.79 16 23 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 24 C -0.09 -0.87 5.75 -106.72 -0.61 -1.48 16 25 C -0.10 -0.71 9.77 -39.52 -0.39 -1.09 16 26 C -0.11 -0.68 9.95 -39.89 -0.40 -1.07 16 27 C -0.11 -0.71 9.94 -39.94 -0.40 -1.11 16 28 C -0.08 -0.76 9.99 -39.41 -0.39 -1.15 16 29 C 0.12 1.41 6.61 -84.85 -0.56 0.85 16 30 N -0.44 -5.83 9.47 -7.54 -0.07 -5.90 16 31 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.76 7.30 -51.93 -0.38 1.38 16 35 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.41 5.92 7.84 -40.82 -0.32 5.60 16 40 H 0.15 1.64 7.60 -52.49 -0.40 1.25 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -33.91 379.18 -9.63 -43.54 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.06 Total: 3.89 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -3.63 Total: 7.68 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.35 Total: -60.50 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.28 Total: -17.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.91 -9.63 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082339692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.827 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds