Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 H 1.09000 * 110.64240 * 26.86230 * 3 2 1 5 5 C 1.54320 * 110.87434 * 263.61146 * 3 2 1 6 6 N 1.47024 * 107.27205 * 219.37440 * 5 3 2 7 7 C 1.36938 * 125.64837 * 178.99365 * 6 5 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 6 5 9 9 C 1.38808 * 119.99881 * 359.97438 * 7 6 5 10 10 N 1.31623 * 120.00453 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46807 * 89.99579 * 11 9 7 13 13 H 1.48494 * 109.47197 * 209.99702 * 11 9 7 14 14 H 1.48501 * 109.47015 * 329.99639 * 11 9 7 15 15 C 1.47463 * 108.72337 * 358.97565 * 6 5 3 16 16 C 1.54912 * 104.81383 * 24.06858 * 15 6 5 17 17 H 1.09000 * 111.00145 * 81.13483 * 16 15 6 18 18 N 1.46498 * 111.01095 * 204.95282 * 16 15 6 19 19 C 1.34776 * 119.99807 * 270.41990 * 18 16 15 20 20 O 1.21501 * 119.99864 * 0.02562 * 19 18 16 21 21 C 1.48274 * 120.00124 * 179.97438 * 19 18 16 22 22 C 1.40277 * 119.24014 * 179.97438 * 21 19 18 23 23 C 1.36506 * 119.81074 * 179.69543 * 22 21 19 24 24 C 1.40750 * 118.24962 * 0.28125 * 23 22 21 25 25 C 1.40420 * 121.28056 * 180.02562 * 24 23 22 26 26 C 1.36127 * 119.65235 * 179.97438 * 25 24 23 27 27 C 1.39436 * 120.91675 * 359.97438 * 26 25 24 28 28 C 1.35999 * 121.08198 * 359.97438 * 27 26 25 29 29 C 1.40827 * 119.73732 * 0.04520 * 28 27 26 30 30 N 1.31884 * 119.23872 * 0.27816 * 21 19 18 31 31 H 1.09004 * 109.46775 * 299.99706 * 1 2 3 32 32 H 1.08998 * 109.47296 * 59.99289 * 1 2 3 33 33 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.88222 * 338.79446 * 5 3 2 35 35 H 1.09004 * 109.88308 * 99.95701 * 5 3 2 36 36 H 0.97001 * 120.00313 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.35238 * 265.25475 * 15 6 5 38 38 H 1.09001 * 110.40880 * 142.91229 * 15 6 5 39 39 H 0.96993 * 119.99904 * 90.41167 * 18 16 15 40 40 H 1.08002 * 120.09636 * 359.97438 * 22 21 19 41 41 H 1.08002 * 120.87398 * 180.29904 * 23 22 21 42 42 H 1.08006 * 120.16832 * 359.96223 * 25 24 23 43 43 H 1.08005 * 119.54508 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.46267 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.13011 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0267 0.4609 5 6 2.3804 1.7426 -1.4330 6 7 3.6669 2.4501 -1.3549 7 6 4.3515 2.9808 -2.4155 8 1 5.2929 3.4843 -2.2530 9 6 3.8353 2.8715 -3.6994 10 7 2.6881 2.2574 -3.8976 11 14 4.7688 3.5961 -5.1462 12 1 5.6949 2.5752 -5.6990 13 1 3.8065 4.0127 -6.1976 14 1 5.5473 4.7763 -4.6919 15 6 4.0980 2.4942 0.0546 16 6 3.3817 1.2958 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2164 1.5209 2.1638 19 6 4.1770 1.1255 3.0225 20 8 5.1802 0.5828 2.6038 21 6 4.0101 1.3538 4.4780 22 6 5.0196 0.9354 5.3574 23 6 4.8808 1.1453 6.6991 24 6 3.7098 1.7779 7.1568 25 6 3.5014 2.0258 8.5231 26 6 2.3566 2.6404 8.9291 27 6 1.3859 3.0287 8.0065 28 6 1.5536 2.8061 6.6754 29 6 2.7240 2.1725 6.2150 30 7 2.9131 1.9402 4.9164 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.4774 0.8666 -2.0743 35 1 1.6137 2.4098 -1.8268 36 1 2.3276 2.1807 -4.7948 37 1 3.7857 3.4303 0.5174 38 1 5.1795 2.3775 0.1251 39 1 2.4157 1.9546 2.4979 40 1 5.9063 0.4525 4.9737 41 1 5.6496 0.8345 7.3911 42 1 4.2454 1.7302 9.2480 43 1 2.1979 2.8298 9.9805 44 1 0.4866 3.5150 8.3545 45 1 0.7916 3.1129 5.9742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082339692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -9.198975 kcal Electronic energy + Delta-G solvation = -28855.665116 eV Core-core repulsion = 24838.353874 eV Total energy + Delta-G solvation = -4017.311242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08199 -40.94477 -39.68194 -37.86843 -37.52020 -35.77169 -34.60008 -33.68334 -31.82414 -31.05603 -30.49350 -28.95003 -27.55994 -26.61285 -25.68510 -24.63698 -23.07562 -22.66580 -22.18630 -21.65325 -19.64396 -18.99339 -18.85274 -18.17821 -17.87196 -17.25946 -16.55040 -16.49653 -16.36261 -15.85517 -15.84625 -15.57572 -15.39280 -15.19965 -15.09202 -14.99382 -14.60840 -14.27853 -14.03611 -14.01784 -13.64405 -13.28283 -13.02311 -12.75763 -12.69020 -12.62657 -12.61660 -12.44895 -12.35339 -12.08329 -11.88319 -11.70859 -11.64033 -11.49864 -10.78834 -10.73750 -10.58923 -10.21898 -9.82195 -9.26547 -8.99359 -7.88403 -5.27145 -0.86190 -0.34377 0.92347 1.35666 1.45297 1.48294 1.56650 1.83043 2.19227 2.45231 2.72627 2.88765 3.08271 3.30948 3.46998 3.55563 3.62945 3.79626 3.82897 3.87793 3.89762 4.04690 4.16068 4.25964 4.31677 4.39098 4.40593 4.52151 4.56532 4.61948 4.77735 4.78618 4.84021 4.86943 4.95231 5.04076 5.10279 5.27258 5.33691 5.38732 5.40035 5.44993 5.50617 5.63299 5.86983 6.11290 6.26150 6.28520 6.64838 7.00814 7.03728 7.67338 8.30405 9.21366 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002466 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.271952 B =11352.070627 C =11926.663503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.177 3.823 6 N -0.621 5.621 7 C -0.247 4.247 8 H 0.084 0.916 9 C -0.063 4.063 10 N -0.950 5.950 11 Si 0.984 3.016 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.147 3.853 17 H 0.082 0.918 18 N -0.683 5.683 19 C 0.566 3.434 20 O -0.562 6.562 21 C 0.101 3.899 22 C -0.143 4.143 23 C -0.046 4.046 24 C -0.101 4.101 25 C -0.101 4.101 26 C -0.103 4.103 27 C -0.093 4.093 28 C -0.109 4.109 29 C 0.097 3.903 30 N -0.458 5.458 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.249 0.751 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.418 0.582 40 H 0.150 0.850 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 -0.031 30.808 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.017 3.983 4 H 0.110 0.890 5 C 0.051 3.949 6 N -0.348 5.348 7 C -0.376 4.376 8 H 0.102 0.898 9 C -0.256 4.256 10 N -0.598 5.598 11 Si 0.811 3.189 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.006 3.994 16 C 0.041 3.959 17 H 0.100 0.900 18 N -0.334 5.334 19 C 0.352 3.648 20 O -0.440 6.440 21 C -0.052 4.052 22 C -0.164 4.164 23 C -0.071 4.071 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.127 4.127 29 C -0.027 4.027 30 N -0.170 5.170 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.255 0.745 40 H 0.168 0.832 41 H 0.202 0.798 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.178 0.822 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.485 -0.278 29.719 30.057 hybrid contribution 0.454 0.313 -1.019 1.159 sum -4.031 0.035 28.701 28.982 Atomic orbital electron populations 1.22998 0.79260 1.03983 1.00731 1.87884 1.21842 1.26860 1.94936 1.23486 0.93422 0.85287 0.96063 0.88972 1.21272 0.87220 0.94798 0.91571 1.44532 1.22086 1.66285 1.01948 1.19457 1.02814 1.29483 0.85836 0.89837 1.25707 0.98458 1.01414 1.00010 1.70161 1.20607 1.48291 1.20733 0.85010 0.77268 0.78087 0.78523 1.21343 1.21628 1.19234 1.21904 0.97441 0.95371 0.84710 1.21976 0.96132 0.98843 0.78962 0.90008 1.45584 1.22456 1.59937 1.05420 1.18359 0.82728 0.77940 0.85753 1.90772 1.30074 1.44262 1.78899 1.21046 0.92499 0.98488 0.93155 1.21825 0.99888 1.00477 0.94181 1.21877 0.96629 0.93610 0.95032 1.19320 0.95211 0.99581 0.96160 1.21394 0.99316 0.98342 0.92931 1.21487 0.92829 0.95988 1.01785 1.21367 1.00460 0.97568 0.91839 1.21087 0.95539 0.98616 0.97467 1.19300 0.96410 0.99199 0.87751 1.67710 1.20595 1.11314 1.17397 0.92081 0.94322 0.87954 0.96093 0.95763 0.94124 0.94372 0.94147 0.74467 0.83198 0.79779 0.81867 0.81877 0.82217 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.85 113.37 1.23 1.97 16 2 O -0.40 -15.27 10.44 -148.98 -1.56 -16.83 16 3 C 0.08 3.07 3.08 31.78 0.10 3.17 16 4 H 0.09 3.17 7.68 -2.39 -0.02 3.15 16 5 C 0.18 9.19 5.15 86.73 0.45 9.64 16 6 N -0.62 -33.88 3.40 -691.89 -2.35 -36.23 16 7 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 8 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 9 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 10 N -0.95 -58.26 10.31 21.65 0.22 -58.03 16 11 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 C 0.13 6.05 6.93 86.85 0.60 6.65 16 16 C 0.15 5.99 3.09 46.39 0.14 6.13 16 17 H 0.08 3.78 7.63 -2.39 -0.02 3.77 16 18 N -0.68 -23.06 5.20 -438.41 -2.28 -25.34 16 19 C 0.57 19.67 7.81 86.91 0.68 20.34 16 20 O -0.56 -23.06 15.97 -3.72 -0.06 -23.12 16 21 C 0.10 2.86 6.75 42.30 0.29 3.15 16 22 C -0.14 -3.27 9.54 22.36 0.21 -3.06 16 23 C -0.05 -0.73 9.88 22.48 0.22 -0.51 16 24 C -0.10 -1.70 5.75 -21.22 -0.12 -1.82 16 25 C -0.10 -0.98 9.77 22.31 0.22 -0.76 16 26 C -0.10 -0.77 9.95 22.07 0.22 -0.55 16 27 C -0.09 -0.90 9.94 22.04 0.22 -0.68 16 28 C -0.11 -1.76 9.99 22.38 0.22 -1.53 16 29 C 0.10 2.10 6.61 40.47 0.27 2.36 16 30 N -0.46 -12.07 9.47 -177.76 -1.68 -13.75 16 31 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.02 1.24 7.30 -2.38 -0.02 1.23 16 35 H 0.02 1.35 7.51 -2.39 -0.02 1.34 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.42 12.22 7.84 -92.71 -0.73 11.49 16 40 H 0.15 3.36 7.60 -2.91 -0.02 3.34 16 41 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.16 0.12 8.06 -2.91 -0.02 0.10 16 44 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -78.75 379.18 0.89 -77.86 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.29 Total: 18.76 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 6.27 Total: 27.68 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -6.09 Total: -133.35 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.61 Total: -39.95 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.75 0.89 -77.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082339692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.665 kcal (2) G-P(sol) polarization free energy of solvation -78.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds