Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35598 * 117.00242 * 2 1 4 4 C 1.39161 * 120.50349 * 0.25657 * 3 2 1 5 5 C 1.38292 * 118.63636 * 180.26221 * 4 3 2 6 6 C 1.39963 * 119.59834 * 359.72563 * 5 4 3 7 7 N 1.38827 * 119.50414 * 180.02562 * 6 5 4 8 8 C 1.39941 * 119.99739 * 353.55065 * 7 6 5 9 9 C 1.36859 * 120.40923 * 120.10518 * 8 7 6 10 10 C 1.40196 * 119.23885 * 179.97438 * 9 8 7 11 11 C 1.35266 * 120.04256 * 0.02562 * 10 9 8 12 12 N 1.35982 * 120.83675 * 0.02562 * 11 10 9 13 13 C 1.46497 * 119.61789 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47365 * 89.99426 * 13 12 11 15 15 C 1.52997 * 117.50475 * 243.75115 * 14 13 12 16 16 C 1.53003 * 117.49902 * 175.08633 * 14 13 12 17 17 C 1.34683 * 120.77235 * 359.68506 * 12 11 10 18 18 O 1.22051 * 120.03994 * 180.28400 * 17 12 11 19 19 N 1.31944 * 120.99781 * 0.02562 * 6 5 4 20 20 C 1.33799 * 121.46745 * 359.97438 * 19 6 5 21 21 C 1.40904 * 119.84632 * 179.97438 * 20 19 6 22 22 H 1.08005 * 119.99580 * 179.97438 * 21 20 19 23 23 C 1.39979 * 120.00275 * 359.72309 * 21 20 19 24 24 N 1.30808 * 119.99854 * 0.27235 * 23 21 20 25 25 Si 1.86794 * 120.00120 * 180.27823 * 23 21 20 26 26 H 1.48501 * 109.47520 * 59.99135 * 25 23 21 27 27 H 1.48500 * 109.47391 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47047 * 299.99594 * 25 23 21 29 29 H 1.08998 * 109.47811 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46948 * 300.00090 * 1 2 3 31 31 H 1.09005 * 109.46697 * 59.99634 * 1 2 3 32 32 H 1.08004 * 120.67768 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.20258 * 179.69873 * 5 4 3 34 34 H 0.96997 * 120.00207 * 173.55015 * 7 6 5 35 35 H 1.08003 * 120.38411 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.97986 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.58420 * 180.02562 * 11 10 9 38 38 H 1.08997 * 109.47479 * 209.99787 * 13 12 11 39 39 H 1.08997 * 109.47082 * 329.99980 * 13 12 11 40 40 H 1.09008 * 115.54785 * 29.42224 * 14 13 12 41 41 H 1.09001 * 117.49553 * 359.97438 * 15 14 13 42 42 H 1.08997 * 117.50570 * 145.02180 * 15 14 13 43 43 H 1.09001 * 117.49931 * 214.98155 * 16 14 13 44 44 H 1.08997 * 117.50083 * 359.97438 * 16 14 13 45 45 H 0.96999 * 119.99433 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2970 2.3819 0.0054 5 6 1.9647 3.5930 -0.0004 6 6 3.3642 3.6108 -0.0056 7 7 4.0325 4.8276 -0.0108 8 6 3.3132 6.0203 -0.1470 9 6 3.3650 6.9761 0.8311 10 6 2.6351 8.1620 0.6690 11 6 1.8900 8.3519 -0.4438 12 7 1.8359 7.4034 -1.4167 13 6 1.0208 7.6372 -2.6113 14 6 1.8702 8.3254 -3.6817 15 6 1.4610 9.7363 -4.1092 16 6 1.2304 8.5532 -5.0528 17 6 2.5284 6.2543 -1.2980 18 8 2.4743 5.4143 -2.1818 19 7 4.0581 2.4885 -0.0055 20 6 3.4547 1.2943 -0.0001 21 6 4.2293 0.1173 -0.0008 22 1 3.7448 -0.8480 0.0040 23 6 5.6267 0.1990 -0.0130 24 7 6.2134 1.3680 -0.0184 25 14 6.6534 -1.3615 -0.0218 26 1 6.3300 -2.1601 -1.2313 27 1 8.0950 -1.0054 -0.0351 28 1 6.3514 -2.1596 1.1936 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2175 2.3477 0.0100 33 1 1.4096 4.5194 -0.0013 34 1 4.9979 4.8512 0.0800 35 1 3.9614 6.8187 1.7177 36 1 2.6670 8.9242 1.4336 37 1 1.3309 9.2685 -0.5612 38 1 0.6558 6.6842 -2.9943 39 1 0.1742 8.2738 -2.3546 40 1 2.9357 8.0967 -3.6552 41 1 0.5863 10.1741 -3.6281 42 1 2.2571 10.4358 -4.3643 43 1 1.8750 8.4748 -5.9282 44 1 0.2045 8.2123 -5.1923 45 1 7.1817 1.4246 -0.0273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169448691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = 23.130453 kcal Electronic energy + Delta-G solvation = -29433.911965 eV Core-core repulsion = 25418.002632 eV Total energy + Delta-G solvation = -4015.909333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40934 -40.64123 -38.98222 -38.28503 -37.80261 -36.76849 -35.31172 -33.76763 -32.22513 -31.03346 -29.36473 -28.69557 -28.03047 -26.93638 -24.53431 -23.92611 -23.33056 -23.23924 -22.29898 -21.71009 -19.58127 -18.76695 -18.51136 -18.30365 -18.04686 -17.45840 -16.90694 -16.83925 -16.43625 -16.26585 -16.19492 -15.59558 -15.24273 -15.09549 -14.83643 -14.49466 -14.38621 -14.10720 -13.87525 -13.48425 -13.30082 -13.23800 -13.15684 -12.92572 -12.87140 -12.56603 -12.43278 -12.38095 -12.19969 -12.10305 -11.62948 -11.53615 -11.43349 -11.15402 -10.98291 -10.83604 -10.22168 -9.98513 -9.66251 -8.84633 -8.27861 -8.04368 -6.34213 -0.08356 0.97624 1.02064 1.20809 1.40070 1.53408 1.56451 1.66828 2.25890 2.53163 2.74185 2.82276 2.91110 2.99478 3.62540 3.72837 3.88631 3.94141 3.98877 3.99710 4.12613 4.16995 4.27775 4.39425 4.46100 4.47189 4.55581 4.56601 4.62472 4.70671 4.76419 4.78755 4.86825 4.97890 4.99455 5.16360 5.17760 5.23690 5.29694 5.36215 5.46855 5.67555 5.74274 5.84977 6.13942 6.23383 6.39484 6.70234 6.76924 6.90901 7.16241 7.26940 8.23075 8.48310 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003107 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.807846 B = 9010.381211 C = 9561.262420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.334 6.334 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.310 4.310 6 C 0.380 3.620 7 N -0.660 5.660 8 C 0.002 3.998 9 C -0.032 4.032 10 C -0.213 4.213 11 C 0.128 3.872 12 N -0.489 5.489 13 C 0.125 3.875 14 C -0.191 4.191 15 C -0.144 4.144 16 C -0.178 4.178 17 C 0.492 3.508 18 O -0.586 6.586 19 N -0.537 5.537 20 C 0.250 3.750 21 C -0.451 4.451 22 H 0.087 0.913 23 C 0.022 3.978 24 N -0.751 5.751 25 Si 0.991 3.009 26 H -0.263 1.263 27 H -0.264 1.264 28 H -0.257 1.257 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.401 0.599 35 H 0.145 0.855 36 H 0.191 0.809 37 H 0.216 0.784 38 H 0.068 0.932 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 20.466 -0.743 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.248 6.248 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.336 4.336 6 C 0.144 3.856 7 N -0.290 5.290 8 C -0.097 4.097 9 C -0.057 4.057 10 C -0.235 4.235 11 C 0.003 3.997 12 N -0.199 5.199 13 C 0.004 3.996 14 C -0.210 4.210 15 C -0.180 4.180 16 C -0.216 4.216 17 C 0.292 3.708 18 O -0.471 6.471 19 N -0.260 5.260 20 C 0.121 3.879 21 C -0.483 4.483 22 H 0.105 0.895 23 C -0.199 4.199 24 N -0.374 5.374 25 Si 0.810 3.190 26 H -0.187 1.187 27 H -0.189 1.189 28 H -0.181 1.181 29 H 0.134 0.866 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.238 0.762 35 H 0.162 0.838 36 H 0.208 0.792 37 H 0.233 0.767 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.859 19.936 -1.367 21.858 hybrid contribution 0.015 -0.914 -0.309 0.965 sum -8.844 19.022 -1.676 21.044 Atomic orbital electron populations 1.23035 0.79092 1.04152 1.00421 1.85839 1.21081 1.26955 1.90930 1.20038 0.93224 0.84404 1.16172 1.20966 0.98707 0.91685 1.02989 1.20374 0.92637 0.96443 1.24159 1.18717 0.88431 0.86834 0.91624 1.41033 1.07869 1.00355 1.79768 1.18313 1.04928 0.90381 0.96044 1.21901 0.95476 0.93319 0.95018 1.20949 1.02545 0.99268 1.00751 1.22808 0.96771 0.93484 0.86686 1.45573 1.39291 1.15655 1.19426 1.21645 0.93051 1.01954 0.82915 1.22409 0.98847 1.02118 0.97621 1.23234 1.04048 0.89274 1.01477 1.23057 1.02435 1.03523 0.92570 1.17735 0.82633 0.82228 0.88206 1.90977 1.66566 1.45494 1.44057 1.68300 1.35952 0.95674 1.26041 1.18227 0.86721 0.91587 0.91348 1.19698 0.92020 0.92781 1.43822 0.89536 1.27012 0.99248 1.01000 0.92688 1.70271 1.10839 1.26842 1.29417 0.85157 0.76665 0.77150 0.80000 1.18715 1.18855 1.18104 0.86619 0.93303 0.93960 0.85381 0.88797 0.76210 0.83760 0.79174 0.76694 0.91368 0.84303 0.90913 0.85523 0.88032 0.89119 0.87394 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.83 113.37 1.11 2.14 16 2 O -0.33 -17.01 9.61 -89.08 -0.86 -17.86 16 3 C -0.09 -5.16 6.74 23.24 0.16 -5.00 16 4 C -0.12 -6.20 9.12 22.50 0.21 -6.00 16 5 C -0.31 -16.55 8.24 22.70 0.19 -16.37 16 6 C 0.38 21.37 7.11 133.46 0.95 22.32 16 7 N -0.66 -31.26 5.32 -184.90 -0.98 -32.24 16 8 C 0.00 0.09 5.14 38.27 0.20 0.29 16 9 C -0.03 -0.84 10.01 22.42 0.22 -0.61 16 10 C -0.21 -3.32 10.00 22.06 0.22 -3.10 16 11 C 0.13 1.85 10.28 83.36 0.86 2.71 16 12 N -0.49 -12.14 2.59 -650.09 -1.68 -13.82 16 13 C 0.13 2.52 5.61 86.38 0.48 3.01 16 14 C -0.19 -3.69 6.01 -10.79 -0.06 -3.76 16 15 C -0.14 -1.54 10.18 30.62 0.31 -1.23 16 16 C -0.18 -2.79 10.26 30.62 0.31 -2.48 16 17 C 0.49 18.94 6.08 85.00 0.52 19.46 16 18 O -0.59 -29.41 14.95 -5.48 -0.08 -29.49 16 19 N -0.54 -33.46 7.88 -186.16 -1.47 -34.92 16 20 C 0.25 15.69 6.56 40.24 0.26 15.96 16 21 C -0.45 -27.35 8.94 23.35 0.21 -27.14 16 22 H 0.09 5.08 7.31 -2.91 -0.02 5.06 16 23 C 0.02 1.21 5.50 85.27 0.47 1.68 16 24 N -0.75 -43.31 11.45 21.83 0.25 -43.06 16 25 Si 0.99 41.60 29.56 68.60 2.03 43.63 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 28 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 29 H 0.12 3.31 8.14 -2.39 -0.02 3.30 16 30 H 0.05 1.64 7.68 -2.39 -0.02 1.62 16 31 H 0.04 1.47 7.70 -2.38 -0.02 1.45 16 32 H 0.13 5.68 6.43 -2.91 -0.02 5.66 16 33 H 0.09 4.69 6.14 -2.91 -0.02 4.67 16 34 H 0.40 18.64 8.94 -92.71 -0.83 17.81 16 35 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.22 0.54 8.04 -2.91 -0.02 0.52 16 38 H 0.07 1.87 7.40 -2.39 -0.02 1.86 16 39 H 0.14 1.35 7.75 -2.39 -0.02 1.33 16 40 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.13 0.63 8.03 -2.39 -0.02 0.61 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 Total: -1.00 -91.37 378.81 4.03 -87.35 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: 0.21 Total: 38.54 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.62 Total: 1.88 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -3.88 Total: -124.05 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.94 Total: -47.35 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -91.37 4.03 -87.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169448691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.477 kcal (2) G-P(sol) polarization free energy of solvation -91.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds