Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99638 * 2 1 4 4 C 1.38755 * 120.05568 * 359.72172 * 3 2 1 5 5 C 1.38127 * 119.94328 * 179.79342 * 4 3 2 6 6 C 1.38291 * 120.05396 * 0.48410 * 5 4 3 7 7 C 1.38245 * 120.11148 * 359.75029 * 6 5 4 8 8 C 1.38168 * 120.05717 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02915 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47559 * 135.84048 * 9 8 7 11 11 C 1.53004 * 109.47093 * 15.83972 * 9 8 7 12 12 N 1.46501 * 109.47195 * 184.99846 * 11 9 8 13 13 C 1.34771 * 120.00098 * 179.97438 * 12 11 9 14 14 O 1.21522 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.48150 * 119.99970 * 180.02562 * 13 12 11 16 16 C 1.39809 * 120.92396 * 359.71943 * 15 13 12 17 17 C 1.38150 * 119.00476 * 179.79798 * 16 15 13 18 18 N 1.31813 * 120.89125 * 0.48840 * 17 16 15 19 19 C 1.31817 * 122.05405 * 359.74316 * 18 17 16 20 20 C 1.38153 * 120.89166 * 0.02562 * 19 18 17 21 21 N 1.46504 * 109.47296 * 255.84416 * 9 8 7 22 22 C 1.36934 * 120.00057 * 58.54978 * 21 9 8 23 23 H 1.08001 * 120.00092 * 3.42261 * 22 21 9 24 24 C 1.38809 * 120.00228 * 183.41387 * 22 21 9 25 25 N 1.31616 * 120.00449 * 180.02562 * 24 22 21 26 26 Si 1.86808 * 119.99753 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.46914 * 89.99646 * 26 24 22 28 28 H 1.48501 * 109.46939 * 209.99502 * 26 24 22 29 29 H 1.48496 * 109.47041 * 329.99669 * 26 24 22 30 30 H 1.09008 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47229 * 299.99638 * 1 2 3 32 32 H 1.09004 * 109.47637 * 60.00167 * 1 2 3 33 33 H 1.08001 * 120.02815 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.97599 * 180.25481 * 5 4 3 35 35 H 1.07995 * 119.94236 * 179.77066 * 6 5 4 36 36 H 1.07997 * 119.96898 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47224 * 305.00276 * 11 9 8 38 38 H 1.08997 * 109.46682 * 65.00052 * 11 9 8 39 39 H 0.97003 * 119.99669 * 0.02562 * 12 11 9 40 40 H 1.08003 * 120.49991 * 0.02562 * 16 15 13 41 41 H 1.07998 * 119.55469 * 180.23236 * 17 16 15 42 42 H 1.07996 * 119.55570 * 179.97438 * 19 18 17 43 43 H 1.07996 * 120.49628 * 179.97438 * 20 19 18 44 44 H 0.96996 * 119.99901 * 238.55618 * 21 9 8 45 45 H 0.97006 * 120.00353 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9206 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0015 7 6 4.0558 2.5173 -0.0006 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0013 10 1 3.8338 -0.6841 0.7174 11 6 5.6945 0.3529 0.3960 12 7 6.5206 -0.8517 0.2823 13 6 7.8338 -0.7989 0.5809 14 8 8.3325 0.2478 0.9449 15 6 8.6692 -2.0169 0.4653 16 6 8.1143 -3.2324 0.0540 17 6 8.9309 -4.3424 -0.0441 18 7 10.2129 -4.2679 0.2530 19 6 10.7750 -3.1432 0.6490 20 6 10.0334 -1.9839 0.7703 21 7 4.2384 -0.5722 -1.3375 22 6 4.6928 0.1463 -2.4110 23 1 5.1135 1.1300 -2.2633 24 6 4.6128 -0.3896 -3.6890 25 7 5.0500 0.3008 -4.7207 26 14 3.8846 -2.0908 -3.9445 27 1 2.4215 -1.9741 -4.1706 28 1 4.5188 -2.7283 -5.1263 29 1 4.1345 -2.9222 -2.7398 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2127 2.3203 -0.0100 34 1 1.3338 4.5114 -0.0019 35 1 3.7919 4.6382 -0.0018 36 1 5.1342 2.5755 -0.0010 37 1 6.0848 1.1251 -0.2668 38 1 5.7159 0.7123 1.4248 39 1 6.1225 -1.6870 -0.0087 40 1 7.0638 -3.3017 -0.1871 41 1 8.5123 -5.2850 -0.3646 42 1 11.8293 -3.1280 0.8825 43 1 10.5003 -1.0661 1.0957 44 1 3.9063 -1.4748 -1.4636 45 1 4.9937 -0.0735 -5.6139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198490909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 17.343961 kcal Electronic energy + Delta-G solvation = -29471.596973 eV Core-core repulsion = 25455.436720 eV Total energy + Delta-G solvation = -4016.160254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49226 -39.94960 -38.80991 -37.29324 -35.97349 -33.72166 -32.64318 -31.93646 -31.23396 -30.29521 -29.68182 -27.87440 -26.83066 -24.99779 -23.91562 -23.34863 -22.44442 -21.58745 -20.43523 -19.85358 -18.16431 -18.07536 -17.58429 -16.55081 -15.85729 -15.74191 -15.56116 -15.42739 -15.23349 -15.04232 -14.91315 -14.44741 -14.36786 -13.93678 -13.82372 -13.68087 -13.45809 -13.09270 -12.79581 -12.73875 -12.32561 -12.22636 -11.80280 -11.74477 -11.67844 -11.13068 -11.00333 -10.82132 -10.65732 -10.52232 -10.14261 -10.07416 -9.89796 -9.60812 -9.49380 -9.27077 -9.07405 -8.64166 -8.43876 -7.75906 -7.37008 -5.80723 -3.18964 0.73769 1.02658 1.74925 1.87748 3.06760 3.27024 3.34463 3.37225 3.40629 3.60106 3.88335 4.17317 4.33547 4.52869 4.64530 4.78185 4.94612 5.01773 5.06970 5.08352 5.24083 5.31311 5.35233 5.35653 5.43220 5.50528 5.55389 5.63725 5.66644 5.73723 5.78537 5.81911 5.89303 6.03936 6.05302 6.17311 6.40225 6.50257 6.52153 6.65816 6.79530 6.85570 6.98343 7.19227 7.76450 7.78548 7.82366 7.92208 8.35964 8.43323 9.12383 9.83991 10.01383 11.37031 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.003778 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.662147 B = 7408.618205 C = 8560.506975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.142 3.858 4 C -0.214 4.214 5 C -0.092 4.092 6 C -0.157 4.157 7 C -0.074 4.074 8 C -0.094 4.094 9 C 0.214 3.786 10 H 0.074 0.926 11 C 0.107 3.893 12 N -0.692 5.692 13 C 0.553 3.447 14 O -0.541 6.541 15 C -0.078 4.078 16 C -0.139 4.139 17 C 0.094 3.906 18 N -0.475 5.475 19 C 0.091 3.909 20 C -0.118 4.118 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.092 0.908 24 C 0.010 3.990 25 N -0.929 5.929 26 Si 0.882 3.118 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.400 0.600 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.147 0.853 44 H 0.365 0.635 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 -3.386 13.467 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.096 3.904 4 C -0.233 4.233 5 C -0.111 4.111 6 C -0.175 4.175 7 C -0.092 4.092 8 C -0.098 4.098 9 C 0.103 3.897 10 H 0.092 0.908 11 C -0.018 4.018 12 N -0.341 5.341 13 C 0.338 3.662 14 O -0.419 6.419 15 C -0.089 4.089 16 C -0.160 4.160 17 C -0.062 4.062 18 N -0.185 5.185 19 C -0.065 4.065 20 C -0.139 4.139 21 N -0.373 5.373 22 C -0.368 4.368 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.576 5.576 26 Si 0.713 3.287 27 H -0.213 1.213 28 H -0.220 1.220 29 H -0.205 1.205 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.158 0.842 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.165 0.835 44 H 0.198 0.802 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.283 -3.413 13.460 13.945 hybrid contribution -1.700 -0.534 -0.822 1.963 sum -2.983 -3.947 12.638 13.572 Atomic orbital electron populations 1.22961 0.79505 1.03311 1.00819 1.86097 1.20303 1.27059 1.88617 1.18715 0.91670 0.83818 0.96202 1.21075 0.99347 0.92612 1.10232 1.20767 0.94668 0.96511 0.99143 1.20967 0.93828 0.98250 1.04469 1.21026 1.00177 0.91155 0.96883 1.19688 0.90671 0.96398 1.03010 1.19094 0.90692 0.91466 0.88451 0.90790 1.22034 0.92345 0.87200 1.00260 1.45610 1.08105 1.14186 1.66247 1.18078 0.82227 0.87612 0.78262 1.90746 1.72759 1.30835 1.47600 1.20503 0.94982 0.94074 0.99319 1.22433 1.01930 0.93029 0.98569 1.22735 0.89068 0.98483 0.95955 1.67540 1.12790 1.28509 1.09639 1.22769 1.00412 0.87628 0.95738 1.22316 0.93194 1.00592 0.97790 1.42756 1.76519 1.15136 1.02905 1.18945 1.32741 1.00696 0.84398 0.88991 1.24651 1.00893 0.97650 0.95441 1.69696 1.52107 1.37399 0.98394 0.86614 0.79262 0.85764 0.77052 1.21290 1.21997 1.20466 0.88816 0.93265 0.92934 0.86261 0.86643 0.86481 0.85248 0.90283 0.92004 0.76358 0.84161 0.82213 0.82195 0.83516 0.80200 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.31 -4.98 9.81 -19.43 -0.19 -5.17 16 3 C 0.14 2.42 6.66 -39.22 -0.26 2.16 16 4 C -0.21 -3.24 9.04 -39.43 -0.36 -3.60 16 5 C -0.09 -1.34 10.04 -39.60 -0.40 -1.74 16 6 C -0.16 -2.42 10.04 -39.56 -0.40 -2.81 16 7 C -0.07 -1.26 8.91 -39.60 -0.35 -1.61 16 8 C -0.09 -1.68 4.73 -104.48 -0.49 -2.18 16 9 C 0.21 3.75 2.70 -69.08 -0.19 3.56 16 10 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 11 C 0.11 1.84 4.00 -4.04 -0.02 1.82 16 12 N -0.69 -11.29 5.35 -61.15 -0.33 -11.62 16 13 C 0.55 9.42 7.80 -12.19 -0.10 9.32 16 14 O -0.54 -10.70 16.45 5.35 0.09 -10.61 16 15 C -0.08 -1.12 5.91 -104.65 -0.62 -1.74 16 16 C -0.14 -1.74 9.62 -39.03 -0.38 -2.12 16 17 C 0.09 1.11 11.17 -17.59 -0.20 0.91 16 18 N -0.48 -6.07 10.33 -13.30 -0.14 -6.20 16 19 C 0.09 1.05 11.17 -17.59 -0.20 0.86 16 20 C -0.12 -1.53 9.68 -39.02 -0.38 -1.91 16 21 N -0.73 -15.35 4.53 -54.55 -0.25 -15.60 16 22 C -0.24 -6.15 9.30 -15.06 -0.14 -6.29 16 23 H 0.09 2.63 7.30 -52.49 -0.38 2.24 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 25 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 26 Si 0.88 21.06 27.77 -169.99 -4.72 16.34 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 29 H -0.28 -5.96 6.47 56.52 0.37 -5.59 16 30 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 32 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.13 2.17 5.83 -52.49 -0.31 1.87 16 37 H 0.08 1.57 5.80 -51.93 -0.30 1.27 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.40 5.98 6.28 -40.82 -0.26 5.73 16 40 H 0.14 1.55 6.54 -52.48 -0.34 1.20 16 41 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.15 1.79 7.74 -52.49 -0.41 1.38 16 44 H 0.36 7.55 5.87 -40.82 -0.24 7.31 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -34.06 376.77 -8.13 -42.20 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -5.48 Total: 16.43 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -3.57 Total: -3.85 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.06 Total: -61.01 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.10 Total: -15.79 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.72 Total: 16.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.06 -8.13 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198490909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.541 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds