Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99638 * 2 1 4 4 C 1.38755 * 120.05568 * 359.72172 * 3 2 1 5 5 C 1.38127 * 119.94328 * 179.79342 * 4 3 2 6 6 C 1.38291 * 120.05396 * 0.48410 * 5 4 3 7 7 C 1.38245 * 120.11148 * 359.75029 * 6 5 4 8 8 C 1.38168 * 120.05717 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02915 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47559 * 135.84048 * 9 8 7 11 11 C 1.53004 * 109.47093 * 15.83972 * 9 8 7 12 12 N 1.46501 * 109.47195 * 184.99846 * 11 9 8 13 13 C 1.34771 * 120.00098 * 179.97438 * 12 11 9 14 14 O 1.21522 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.48150 * 119.99970 * 180.02562 * 13 12 11 16 16 C 1.39809 * 120.92396 * 359.71943 * 15 13 12 17 17 C 1.38150 * 119.00476 * 179.79798 * 16 15 13 18 18 N 1.31813 * 120.89125 * 0.48840 * 17 16 15 19 19 C 1.31817 * 122.05405 * 359.74316 * 18 17 16 20 20 C 1.38153 * 120.89166 * 0.02562 * 19 18 17 21 21 N 1.46504 * 109.47296 * 255.84416 * 9 8 7 22 22 C 1.36934 * 120.00057 * 58.54978 * 21 9 8 23 23 H 1.08001 * 120.00092 * 3.42261 * 22 21 9 24 24 C 1.38809 * 120.00228 * 183.41387 * 22 21 9 25 25 N 1.31616 * 120.00449 * 180.02562 * 24 22 21 26 26 Si 1.86808 * 119.99753 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.46914 * 89.99646 * 26 24 22 28 28 H 1.48501 * 109.46939 * 209.99502 * 26 24 22 29 29 H 1.48496 * 109.47041 * 329.99669 * 26 24 22 30 30 H 1.09008 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47229 * 299.99638 * 1 2 3 32 32 H 1.09004 * 109.47637 * 60.00167 * 1 2 3 33 33 H 1.08001 * 120.02815 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.97599 * 180.25481 * 5 4 3 35 35 H 1.07995 * 119.94236 * 179.77066 * 6 5 4 36 36 H 1.07997 * 119.96898 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47224 * 305.00276 * 11 9 8 38 38 H 1.08997 * 109.46682 * 65.00052 * 11 9 8 39 39 H 0.97003 * 119.99669 * 0.02562 * 12 11 9 40 40 H 1.08003 * 120.49991 * 0.02562 * 16 15 13 41 41 H 1.07998 * 119.55469 * 180.23236 * 17 16 15 42 42 H 1.07996 * 119.55570 * 179.97438 * 19 18 17 43 43 H 1.07996 * 120.49628 * 179.97438 * 20 19 18 44 44 H 0.96996 * 119.99901 * 238.55618 * 21 9 8 45 45 H 0.97006 * 120.00353 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9206 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0015 7 6 4.0558 2.5173 -0.0006 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0013 10 1 3.8338 -0.6841 0.7174 11 6 5.6945 0.3529 0.3960 12 7 6.5206 -0.8517 0.2823 13 6 7.8338 -0.7989 0.5809 14 8 8.3325 0.2478 0.9449 15 6 8.6692 -2.0169 0.4653 16 6 8.1143 -3.2324 0.0540 17 6 8.9309 -4.3424 -0.0441 18 7 10.2129 -4.2679 0.2530 19 6 10.7750 -3.1432 0.6490 20 6 10.0334 -1.9839 0.7703 21 7 4.2384 -0.5722 -1.3375 22 6 4.6928 0.1463 -2.4110 23 1 5.1135 1.1300 -2.2633 24 6 4.6128 -0.3896 -3.6890 25 7 5.0500 0.3008 -4.7207 26 14 3.8846 -2.0908 -3.9445 27 1 2.4215 -1.9741 -4.1706 28 1 4.5188 -2.7283 -5.1263 29 1 4.1345 -2.9222 -2.7398 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2127 2.3203 -0.0100 34 1 1.3338 4.5114 -0.0019 35 1 3.7919 4.6382 -0.0018 36 1 5.1342 2.5755 -0.0010 37 1 6.0848 1.1251 -0.2668 38 1 5.7159 0.7123 1.4248 39 1 6.1225 -1.6870 -0.0087 40 1 7.0638 -3.3017 -0.1871 41 1 8.5123 -5.2850 -0.3646 42 1 11.8293 -3.1280 0.8825 43 1 10.5003 -1.0661 1.0957 44 1 3.9063 -1.4748 -1.4636 45 1 4.9937 -0.0735 -5.6139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198490909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -6.524992 kcal Electronic energy + Delta-G solvation = -29472.632009 eV Core-core repulsion = 25455.436720 eV Total energy + Delta-G solvation = -4017.195289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62377 -41.14064 -40.04393 -38.55563 -37.40678 -35.28054 -34.05647 -33.35780 -32.20718 -31.91111 -30.90328 -29.21327 -27.88832 -26.45720 -25.27952 -24.39195 -23.86941 -22.80221 -21.70074 -21.28440 -19.99938 -19.29534 -18.81950 -17.70859 -17.05559 -17.00883 -16.73240 -16.55822 -16.43368 -16.37384 -16.10968 -16.07203 -15.80632 -15.25246 -14.85551 -14.76049 -14.69957 -14.54129 -14.29941 -14.06846 -13.82754 -13.53683 -13.23369 -12.92949 -12.77076 -12.67019 -12.62993 -12.21155 -11.89690 -11.80258 -11.77070 -11.61962 -11.40803 -10.98591 -10.98268 -10.54141 -10.19628 -10.05201 -9.73505 -9.34568 -8.92659 -7.93266 -5.28434 -0.33712 0.09721 0.49650 0.63478 1.37927 1.44522 1.50875 1.81998 2.09965 2.51939 2.54036 2.85827 2.91162 3.36918 3.49741 3.53061 3.72664 3.79814 3.83633 3.96037 3.99259 4.07073 4.22160 4.28629 4.33824 4.39479 4.44796 4.53051 4.58444 4.61206 4.69290 4.76155 4.80697 4.81891 4.83068 5.05194 5.09072 5.16852 5.35963 5.51884 5.59326 5.61093 5.72360 5.86134 5.98574 6.27367 6.47843 6.60871 6.88331 7.10258 7.14120 7.84526 8.06942 9.28198 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.003778 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.662147 B = 7408.618205 C = 8560.506975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.168 4.168 7 C -0.092 4.092 8 C -0.123 4.123 9 C 0.219 3.781 10 H 0.099 0.901 11 C 0.118 3.882 12 N -0.689 5.689 13 C 0.549 3.451 14 O -0.578 6.578 15 C -0.100 4.100 16 C -0.140 4.140 17 C 0.095 3.905 18 N -0.488 5.488 19 C 0.097 3.903 20 C -0.126 4.126 21 N -0.729 5.729 22 C -0.199 4.199 23 H 0.054 0.946 24 C -0.065 4.065 25 N -0.988 5.988 26 Si 0.948 3.052 27 H -0.291 1.291 28 H -0.308 1.308 29 H -0.235 1.235 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.155 0.845 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.147 0.853 44 H 0.370 0.630 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -5.334 14.998 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.083 3.917 4 C -0.236 4.236 5 C -0.107 4.107 6 C -0.186 4.186 7 C -0.111 4.111 8 C -0.126 4.126 9 C 0.110 3.890 10 H 0.117 0.883 11 C -0.008 4.008 12 N -0.338 5.338 13 C 0.336 3.664 14 O -0.459 6.459 15 C -0.111 4.111 16 C -0.160 4.160 17 C -0.061 4.061 18 N -0.198 5.198 19 C -0.060 4.060 20 C -0.147 4.147 21 N -0.370 5.370 22 C -0.330 4.330 23 H 0.072 0.928 24 C -0.255 4.255 25 N -0.639 5.639 26 Si 0.776 3.224 27 H -0.218 1.218 28 H -0.235 1.235 29 H -0.159 1.159 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.173 0.827 41 H 0.208 0.792 42 H 0.209 0.791 43 H 0.165 0.835 44 H 0.205 0.795 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.909 -5.394 15.072 16.270 hybrid contribution -1.226 0.181 -1.179 1.710 sum -4.135 -5.213 13.893 15.404 Atomic orbital electron populations 1.23269 0.77240 1.05151 1.01778 1.86051 1.22697 1.26714 1.88533 1.18897 0.91595 0.84975 0.96260 1.21455 1.00815 0.92130 1.09171 1.21196 0.94435 0.97782 0.97314 1.21269 0.94670 0.98447 1.04222 1.21113 1.00034 0.92108 0.97846 1.19716 0.91544 0.96301 1.05059 1.19225 0.90679 0.92200 0.86941 0.88315 1.21834 0.92013 0.86833 1.00120 1.45581 1.08077 1.14148 1.66021 1.18554 0.82395 0.88148 0.77302 1.90716 1.73393 1.32453 1.49314 1.20435 0.95437 0.93694 1.01512 1.22607 1.02831 0.92435 0.98133 1.23240 0.88699 0.99303 0.94848 1.67639 1.13358 1.28859 1.09907 1.23233 1.01664 0.86633 0.94425 1.22453 0.92858 1.01380 0.98025 1.42622 1.76277 1.15120 1.03029 1.18739 1.29731 0.99003 0.85538 0.92821 1.25405 1.02806 1.02119 0.95217 1.69902 1.55432 1.39832 0.98733 0.85525 0.77543 0.81392 0.77928 1.21776 1.23534 1.15858 0.86696 0.91100 0.93068 0.83484 0.83320 0.84656 0.86345 0.93682 0.90746 0.75380 0.82735 0.79190 0.79072 0.83500 0.79539 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.33 -9.86 9.81 -92.45 -0.91 -10.77 16 3 C 0.13 4.23 6.66 22.51 0.15 4.38 16 4 C -0.22 -6.09 9.04 22.37 0.20 -5.89 16 5 C -0.09 -2.40 10.04 22.26 0.22 -2.18 16 6 C -0.17 -5.09 10.04 22.28 0.22 -4.87 16 7 C -0.09 -3.25 8.91 22.25 0.20 -3.05 16 8 C -0.12 -4.40 4.73 -19.77 -0.09 -4.49 16 9 C 0.22 7.59 2.70 44.24 0.12 7.71 16 10 H 0.10 2.95 7.98 -2.39 -0.02 2.93 16 11 C 0.12 4.13 4.00 86.38 0.35 4.48 16 12 N -0.69 -22.52 5.35 -465.68 -2.49 -25.01 16 13 C 0.55 19.05 7.80 86.88 0.68 19.73 16 14 O -0.58 -23.77 16.45 -3.78 -0.06 -23.83 16 15 C -0.10 -2.84 5.91 -19.88 -0.12 -2.96 16 16 C -0.14 -3.26 9.62 22.63 0.22 -3.05 16 17 C 0.10 2.00 11.17 84.67 0.95 2.95 16 18 N -0.49 -11.33 10.33 -196.00 -2.03 -13.35 16 19 C 0.10 2.06 11.17 84.67 0.95 3.01 16 20 C -0.13 -3.20 9.68 22.63 0.22 -2.98 16 21 N -0.73 -30.06 4.53 -326.50 -1.48 -31.54 16 22 C -0.20 -10.49 9.30 84.03 0.78 -9.71 16 23 H 0.05 3.23 7.30 -2.91 -0.02 3.21 16 24 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 25 N -0.99 -62.69 13.97 21.65 0.30 -62.39 16 26 Si 0.95 43.31 27.77 68.60 1.91 45.22 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.31 -14.74 7.11 99.48 0.71 -14.04 16 29 H -0.23 -8.91 6.47 99.48 0.64 -8.26 16 30 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16 32 H 0.05 1.05 7.65 -2.38 -0.02 1.03 16 33 H 0.15 3.20 6.30 -2.91 -0.02 3.18 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.12 4.29 5.83 -2.91 -0.02 4.27 16 37 H 0.04 1.91 5.80 -2.39 -0.01 1.89 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.41 11.77 6.28 -92.71 -0.58 11.19 16 40 H 0.16 3.04 6.54 -2.91 -0.02 3.03 16 41 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 42 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.15 3.62 7.74 -2.91 -0.02 3.60 16 44 H 0.37 14.48 5.87 -92.71 -0.54 13.94 16 45 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -77.07 376.77 1.72 -75.35 By element: Atomic # 1 Polarization: 45.08 SS G_CDS: -0.14 Total: 44.94 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.62 Total: 1.38 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -5.69 Total: -132.29 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.97 Total: -34.60 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.91 Total: 45.22 kcal Total: -77.07 1.72 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198490909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.820 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds