Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00211 * 2 1 4 4 C 1.38747 * 120.05453 * 0.02885 * 3 2 1 5 5 C 1.38126 * 119.94430 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05381 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.11424 * 359.74639 * 6 5 4 8 8 C 1.38172 * 120.05232 * 0.50902 * 7 6 5 9 9 C 1.50695 * 120.02628 * 179.77493 * 8 7 6 10 10 H 1.09005 * 109.46916 * 219.72482 * 9 8 7 11 11 C 1.52992 * 109.47641 * 99.72022 * 9 8 7 12 12 N 1.46493 * 109.47369 * 184.99912 * 11 9 8 13 13 C 1.34781 * 120.00146 * 179.97438 * 12 11 9 14 14 O 1.21553 * 120.00121 * 0.02562 * 13 12 11 15 15 C 1.47844 * 120.00008 * 179.97438 * 13 12 11 16 16 C 1.40021 * 120.55812 * 180.27557 * 15 13 12 17 17 C 1.38356 * 118.28930 * 180.26824 * 16 15 13 18 18 C 1.38352 * 119.30108 * 359.45848 * 17 16 15 19 19 N 1.31932 * 121.08143 * 0.27994 * 18 17 16 20 20 C 1.31691 * 121.87487 * 0.02562 * 19 18 17 21 21 N 1.46503 * 109.47152 * 339.71561 * 9 8 7 22 22 C 1.36938 * 120.00050 * 275.00481 * 21 9 8 23 23 H 1.08002 * 120.00168 * 359.97438 * 22 21 9 24 24 C 1.38814 * 119.99992 * 179.97438 * 22 21 9 25 25 N 1.31624 * 119.99791 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47044 * 90.00252 * 26 24 22 28 28 H 1.48495 * 109.47064 * 210.00006 * 26 24 22 29 29 H 1.48498 * 109.47144 * 330.00236 * 26 24 22 30 30 H 1.09002 * 109.47013 * 59.99558 * 1 2 3 31 31 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47019 * 300.00251 * 1 2 3 33 33 H 1.08003 * 120.03011 * 359.94935 * 4 3 2 34 34 H 1.07999 * 119.97000 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94350 * 179.97438 * 6 5 4 36 36 H 1.07993 * 119.97322 * 180.25434 * 7 6 5 37 37 H 1.09003 * 109.47073 * 64.99425 * 11 9 8 38 38 H 1.09005 * 109.47001 * 304.99745 * 11 9 8 39 39 H 0.96999 * 120.00497 * 359.97438 * 12 11 9 40 40 H 1.08004 * 120.85991 * 0.02562 * 16 15 13 41 41 H 1.08002 * 120.35338 * 179.74185 * 17 16 15 42 42 H 1.08003 * 119.46505 * 180.25792 * 18 17 16 43 43 H 1.08005 * 119.71404 * 180.02562 * 20 19 18 44 44 H 0.96998 * 120.00029 * 95.00237 * 21 9 8 45 45 H 0.96999 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0068 8 6 3.4311 1.2847 0.0010 9 6 4.2537 0.0221 0.0016 10 1 3.7927 -0.7122 -0.6592 11 6 4.3217 -0.5418 1.4222 12 7 5.2177 -1.7005 1.4453 13 6 5.4329 -2.3631 2.5991 14 8 4.8832 -1.9995 3.6204 15 6 6.3367 -3.5329 2.6223 16 6 6.5642 -4.2332 3.8133 17 6 7.4231 -5.3174 3.7825 18 6 8.0153 -5.6784 2.5854 19 7 7.7781 -5.0029 1.4772 20 6 6.9733 -3.9607 1.4569 21 7 5.6080 0.3213 -0.4705 22 6 5.8766 0.3397 -1.8131 23 1 5.0903 0.1332 -2.5241 24 6 7.1597 0.6237 -2.2604 25 7 8.1179 0.8758 -1.3939 26 14 7.5263 0.6481 -4.0919 27 1 7.3061 2.0175 -4.6225 28 1 8.9389 0.2505 -4.3192 29 1 6.6256 -0.3040 -4.7898 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2128 2.3204 0.0002 34 1 1.3340 4.5113 0.0012 35 1 3.7923 4.6380 0.0016 36 1 5.1344 2.5751 0.0113 37 1 3.3247 -0.8469 1.7401 38 1 4.7005 0.2239 2.0992 39 1 5.6562 -1.9910 0.6303 40 1 6.0845 -3.9325 4.7331 41 1 7.6257 -5.8789 4.6826 42 1 8.6830 -6.5268 2.5576 43 1 6.8037 -3.4333 0.5297 44 1 6.3143 0.5063 0.1680 45 1 9.0145 1.0739 -1.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198492576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = 8.322130 kcal Electronic energy + Delta-G solvation = -29202.866241 eV Core-core repulsion = 25186.314771 eV Total energy + Delta-G solvation = -4016.551470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48411 -39.92912 -38.75070 -37.21858 -35.86761 -33.71813 -32.51977 -32.21396 -31.28272 -29.75856 -29.67039 -27.64604 -26.99018 -24.67560 -23.68797 -23.36724 -22.60347 -21.57073 -20.39735 -20.08585 -18.09083 -17.70198 -17.24665 -16.75575 -16.37304 -15.89535 -15.62617 -15.42925 -15.08029 -14.92997 -14.74235 -14.43368 -13.96353 -13.84928 -13.59154 -13.50488 -13.21294 -13.10174 -12.85471 -12.82260 -12.38555 -12.23002 -12.05773 -11.72141 -11.26103 -10.99425 -10.88399 -10.81225 -10.75493 -10.50735 -10.14345 -10.05202 -9.96245 -9.77052 -9.39058 -9.26603 -9.07574 -8.66814 -8.34458 -7.74444 -7.13939 -5.86277 -3.18180 0.66191 1.17209 1.79540 1.87907 3.03326 3.39014 3.43303 3.46559 3.46993 3.55366 3.90283 4.22717 4.31371 4.51342 4.72283 4.83408 4.88469 5.01737 5.05765 5.14880 5.22169 5.26343 5.34460 5.47137 5.48648 5.50098 5.55670 5.60327 5.69984 5.84885 5.93401 5.93759 5.96547 6.07000 6.25302 6.31088 6.43402 6.50679 6.58014 6.70230 6.80271 6.91072 7.16352 7.33763 7.66502 7.73969 7.80924 7.86023 8.30093 8.44634 9.43238 9.92688 10.30096 11.34806 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.004139 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.795373 B = 6763.105831 C = 9314.824388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.116 4.116 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.124 3.876 12 N -0.703 5.703 13 C 0.559 3.441 14 O -0.549 6.549 15 C -0.181 4.181 16 C -0.020 4.020 17 C -0.185 4.185 18 C 0.116 3.884 19 N -0.486 5.486 20 C 0.141 3.859 21 N -0.717 5.717 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.004 4.004 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -6.066 7.779 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.121 4.121 9 C 0.097 3.903 10 H 0.089 0.911 11 C 0.000 4.000 12 N -0.354 5.354 13 C 0.345 3.655 14 O -0.428 6.428 15 C -0.186 4.186 16 C -0.047 4.047 17 C -0.205 4.205 18 C -0.041 4.041 19 N -0.194 5.194 20 C -0.017 4.017 21 N -0.358 5.358 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.182 0.818 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.256 -6.273 7.504 13.466 hybrid contribution -0.023 0.661 -0.553 0.862 sum -9.279 -5.612 6.951 12.881 Atomic orbital electron populations 1.22959 0.79389 1.03338 1.00871 1.86084 1.20476 1.27197 1.88939 1.18952 0.91965 0.83812 0.97662 1.21048 0.99204 0.92621 1.10924 1.20791 0.94729 0.96449 0.99312 1.21081 0.93708 0.98577 1.04847 1.21100 1.01337 0.90298 0.93417 1.20395 0.89895 0.98243 1.03528 1.19247 0.87138 0.91668 0.92260 0.91139 1.21594 0.93388 0.87001 0.98058 1.45890 1.47576 1.30838 1.11131 1.17991 0.81183 0.82516 0.83818 1.90740 1.50866 1.68161 1.33041 1.21092 1.02345 0.99155 0.96027 1.21718 0.93227 0.91895 0.97871 1.22128 0.99457 0.98848 1.00073 1.23007 0.95786 0.97366 0.87967 1.67750 1.14874 1.06954 1.29826 1.23192 0.89550 0.91451 0.97499 1.42499 1.04191 1.83793 1.05310 1.19184 0.94177 1.40985 0.83096 0.91066 1.24710 0.95957 1.01999 0.97432 1.69654 1.01608 1.53791 1.32440 0.86242 0.77256 0.77702 0.85283 1.21739 1.21787 1.20703 0.93104 0.88732 0.93088 0.86376 0.86789 0.86575 0.84014 0.91019 0.91615 0.75240 0.83691 0.84261 0.82446 0.81780 0.77860 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.77 9.68 -19.44 -0.19 -4.96 16 3 C 0.12 2.01 6.66 -39.22 -0.26 1.75 16 4 C -0.22 -3.20 9.04 -39.43 -0.36 -3.55 16 5 C -0.09 -1.37 10.04 -39.60 -0.40 -1.76 16 6 C -0.16 -2.64 10.04 -39.56 -0.40 -3.03 16 7 C -0.04 -0.81 9.33 -39.60 -0.37 -1.18 16 8 C -0.12 -2.14 5.06 -104.47 -0.53 -2.67 16 9 C 0.21 3.93 2.32 -69.09 -0.16 3.77 16 10 H 0.07 1.39 7.79 -51.93 -0.40 0.99 16 11 C 0.12 2.17 5.21 -4.05 -0.02 2.14 16 12 N -0.70 -11.77 5.34 -61.26 -0.33 -12.09 16 13 C 0.56 9.47 7.78 -12.33 -0.10 9.37 16 14 O -0.55 -10.64 16.42 5.32 0.09 -10.55 16 15 C -0.18 -2.65 5.89 -104.82 -0.62 -3.27 16 16 C -0.02 -0.26 9.72 -38.87 -0.38 -0.63 16 17 C -0.19 -1.86 10.10 -39.50 -0.40 -2.26 16 18 C 0.12 1.27 11.17 -17.47 -0.20 1.08 16 19 N -0.49 -6.88 10.35 -12.91 -0.13 -7.02 16 20 C 0.14 2.05 10.71 -17.13 -0.18 1.87 16 21 N -0.72 -15.86 3.18 -54.55 -0.17 -16.03 16 22 C -0.24 -6.12 9.92 -15.06 -0.15 -6.27 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -25.92 13.06 55.49 0.72 -25.19 16 26 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.12 1.40 6.30 -52.48 -0.33 1.07 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.14 2.93 7.14 -52.49 -0.37 2.56 16 37 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.41 6.79 6.21 -40.82 -0.25 6.54 16 40 H 0.15 1.69 7.74 -52.48 -0.41 1.28 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.17 2.33 6.42 -52.48 -0.34 2.00 16 44 H 0.39 9.23 7.80 -40.82 -0.32 8.92 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -30.90 384.68 -8.58 -39.47 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -5.72 Total: 17.74 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.61 Total: -3.56 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.09 Total: -60.33 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.10 Total: -15.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.90 -8.58 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.797 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds