Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00211 * 2 1 4 4 C 1.38747 * 120.05453 * 0.02885 * 3 2 1 5 5 C 1.38126 * 119.94430 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05381 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.11424 * 359.74639 * 6 5 4 8 8 C 1.38172 * 120.05232 * 0.50902 * 7 6 5 9 9 C 1.50695 * 120.02628 * 179.77493 * 8 7 6 10 10 H 1.09005 * 109.46916 * 219.72482 * 9 8 7 11 11 C 1.52992 * 109.47641 * 99.72022 * 9 8 7 12 12 N 1.46493 * 109.47369 * 184.99912 * 11 9 8 13 13 C 1.34781 * 120.00146 * 179.97438 * 12 11 9 14 14 O 1.21553 * 120.00121 * 0.02562 * 13 12 11 15 15 C 1.47844 * 120.00008 * 179.97438 * 13 12 11 16 16 C 1.40021 * 120.55812 * 180.27557 * 15 13 12 17 17 C 1.38356 * 118.28930 * 180.26824 * 16 15 13 18 18 C 1.38352 * 119.30108 * 359.45848 * 17 16 15 19 19 N 1.31932 * 121.08143 * 0.27994 * 18 17 16 20 20 C 1.31691 * 121.87487 * 0.02562 * 19 18 17 21 21 N 1.46503 * 109.47152 * 339.71561 * 9 8 7 22 22 C 1.36938 * 120.00050 * 275.00481 * 21 9 8 23 23 H 1.08002 * 120.00168 * 359.97438 * 22 21 9 24 24 C 1.38814 * 119.99992 * 179.97438 * 22 21 9 25 25 N 1.31624 * 119.99791 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47044 * 90.00252 * 26 24 22 28 28 H 1.48495 * 109.47064 * 210.00006 * 26 24 22 29 29 H 1.48498 * 109.47144 * 330.00236 * 26 24 22 30 30 H 1.09002 * 109.47013 * 59.99558 * 1 2 3 31 31 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47019 * 300.00251 * 1 2 3 33 33 H 1.08003 * 120.03011 * 359.94935 * 4 3 2 34 34 H 1.07999 * 119.97000 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94350 * 179.97438 * 6 5 4 36 36 H 1.07993 * 119.97322 * 180.25434 * 7 6 5 37 37 H 1.09003 * 109.47073 * 64.99425 * 11 9 8 38 38 H 1.09005 * 109.47001 * 304.99745 * 11 9 8 39 39 H 0.96999 * 120.00497 * 359.97438 * 12 11 9 40 40 H 1.08004 * 120.85991 * 0.02562 * 16 15 13 41 41 H 1.08002 * 120.35338 * 179.74185 * 17 16 15 42 42 H 1.08003 * 119.46505 * 180.25792 * 18 17 16 43 43 H 1.08005 * 119.71404 * 180.02562 * 20 19 18 44 44 H 0.96998 * 120.00029 * 95.00237 * 21 9 8 45 45 H 0.96999 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0068 8 6 3.4311 1.2847 0.0010 9 6 4.2537 0.0221 0.0016 10 1 3.7927 -0.7122 -0.6592 11 6 4.3217 -0.5418 1.4222 12 7 5.2177 -1.7005 1.4453 13 6 5.4329 -2.3631 2.5991 14 8 4.8832 -1.9995 3.6204 15 6 6.3367 -3.5329 2.6223 16 6 6.5642 -4.2332 3.8133 17 6 7.4231 -5.3174 3.7825 18 6 8.0153 -5.6784 2.5854 19 7 7.7781 -5.0029 1.4772 20 6 6.9733 -3.9607 1.4569 21 7 5.6080 0.3213 -0.4705 22 6 5.8766 0.3397 -1.8131 23 1 5.0903 0.1332 -2.5241 24 6 7.1597 0.6237 -2.2604 25 7 8.1179 0.8758 -1.3939 26 14 7.5263 0.6481 -4.0919 27 1 7.3061 2.0175 -4.6225 28 1 8.9389 0.2505 -4.3192 29 1 6.6256 -0.3040 -4.7898 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2128 2.3204 0.0002 34 1 1.3340 4.5113 0.0012 35 1 3.7923 4.6380 0.0016 36 1 5.1344 2.5751 0.0113 37 1 3.3247 -0.8469 1.7401 38 1 4.7005 0.2239 2.0992 39 1 5.6562 -1.9910 0.6303 40 1 6.0845 -3.9325 4.7331 41 1 7.6257 -5.8789 4.6826 42 1 8.6830 -6.5268 2.5576 43 1 6.8037 -3.4333 0.5297 44 1 6.3143 0.5063 0.1680 45 1 9.0145 1.0739 -1.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198492576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = -11.374275 kcal Electronic energy + Delta-G solvation = -29203.720341 eV Core-core repulsion = 25186.314771 eV Total energy + Delta-G solvation = -4017.405570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63253 -41.13425 -40.00450 -38.48546 -37.33462 -35.33624 -33.86489 -33.50988 -32.38281 -31.33733 -30.93197 -29.08037 -27.97244 -26.06373 -25.22494 -24.54724 -23.87303 -22.80256 -21.73292 -21.47433 -19.48638 -19.10432 -18.70419 -17.87412 -17.50700 -17.20090 -16.88876 -16.53765 -16.44471 -16.26180 -16.09265 -15.82165 -15.34505 -15.17547 -15.00900 -14.70774 -14.54084 -14.30006 -14.13556 -14.10869 -13.75807 -13.47434 -13.17276 -12.90054 -12.83436 -12.71945 -12.50427 -12.27414 -12.04736 -11.91299 -11.85043 -11.60885 -11.35521 -10.98137 -10.97744 -10.47374 -10.32861 -10.03876 -9.66275 -9.08296 -8.95519 -7.90912 -5.20802 -0.37768 0.20462 0.51934 0.61283 1.49236 1.50681 1.57825 1.79196 2.11241 2.50164 2.57266 2.84655 2.94044 3.31017 3.42888 3.72385 3.76155 3.82482 3.92397 3.97790 4.02058 4.10517 4.16341 4.30150 4.39406 4.40714 4.45897 4.46600 4.58867 4.64043 4.67061 4.76372 4.78559 4.92966 5.01387 5.04080 5.11205 5.21781 5.35120 5.46103 5.56806 5.59637 5.64255 5.84258 6.02952 6.28772 6.44587 6.58961 6.85368 7.07532 7.37384 8.03141 8.32115 9.30711 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007901 B = 0.004139 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.795373 B = 6763.105831 C = 9314.824388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.218 3.782 10 H 0.061 0.939 11 C 0.138 3.862 12 N -0.703 5.703 13 C 0.559 3.441 14 O -0.578 6.578 15 C -0.199 4.199 16 C -0.027 4.027 17 C -0.165 4.165 18 C 0.117 3.883 19 N -0.512 5.512 20 C 0.130 3.870 21 N -0.718 5.718 22 C -0.229 4.229 23 H 0.069 0.931 24 C -0.058 4.058 25 N -0.960 5.960 26 Si 0.959 3.041 27 H -0.293 1.293 28 H -0.298 1.298 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.410 0.590 40 H 0.152 0.848 41 H 0.184 0.816 42 H 0.197 0.803 43 H 0.154 0.846 44 H 0.376 0.624 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 -6.989 8.302 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.191 4.191 7 C -0.085 4.085 8 C -0.146 4.146 9 C 0.108 3.892 10 H 0.079 0.921 11 C 0.013 3.987 12 N -0.353 5.353 13 C 0.347 3.653 14 O -0.460 6.460 15 C -0.205 4.205 16 C -0.054 4.054 17 C -0.184 4.184 18 C -0.039 4.039 19 N -0.220 5.220 20 C -0.027 4.027 21 N -0.358 5.358 22 C -0.360 4.360 23 H 0.087 0.913 24 C -0.251 4.251 25 N -0.610 5.610 26 Si 0.790 3.210 27 H -0.221 1.221 28 H -0.225 1.225 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.248 0.752 40 H 0.169 0.831 41 H 0.201 0.799 42 H 0.213 0.787 43 H 0.172 0.828 44 H 0.209 0.791 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.149 -7.210 8.015 15.509 hybrid contribution 0.423 0.868 -0.629 1.152 sum -10.726 -6.342 7.386 14.485 Atomic orbital electron populations 1.23306 0.76806 1.05224 1.02171 1.86059 1.23166 1.26772 1.88726 1.18995 0.91393 0.85184 0.97283 1.21446 1.00881 0.91739 1.09134 1.21211 0.94033 0.97977 0.97055 1.21283 0.94820 0.98178 1.04769 1.20922 1.00031 0.91785 0.95750 1.20205 0.91181 0.97320 1.05942 1.19188 0.85461 0.92086 0.92456 0.92075 1.21390 0.93588 0.86839 0.96871 1.45888 1.47452 1.30611 1.11385 1.18378 0.80960 0.82854 0.83116 1.90707 1.52233 1.69222 1.33790 1.20939 1.03086 0.99115 0.97319 1.21963 0.93792 0.92471 0.97153 1.22553 0.97120 0.97435 1.01330 1.23726 0.95409 0.97470 0.87327 1.67765 1.15270 1.07250 1.31760 1.23043 0.90357 0.92141 0.97203 1.42462 1.05357 1.83802 1.04140 1.19369 0.93787 1.38609 0.84272 0.91278 1.25300 0.96106 1.03161 1.00543 1.69791 1.01539 1.55958 1.33720 0.85354 0.76607 0.77410 0.81647 1.22082 1.22502 1.19722 0.91828 0.86801 0.91564 0.82929 0.83003 0.85126 0.87321 0.90581 0.93066 0.75223 0.83073 0.79901 0.78665 0.82847 0.79100 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.78 9.68 -92.47 -0.90 -10.68 16 3 C 0.12 3.78 6.66 22.50 0.15 3.93 16 4 C -0.21 -5.63 9.04 22.36 0.20 -5.42 16 5 C -0.08 -2.21 10.04 22.25 0.22 -1.99 16 6 C -0.17 -5.44 10.04 22.28 0.22 -5.22 16 7 C -0.07 -2.57 9.33 22.26 0.21 -2.36 16 8 C -0.14 -5.39 5.06 -19.77 -0.10 -5.49 16 9 C 0.22 8.64 2.32 44.24 0.10 8.74 16 10 H 0.06 2.52 7.79 -2.38 -0.02 2.50 16 11 C 0.14 5.09 5.21 86.38 0.45 5.54 16 12 N -0.70 -25.00 5.34 -465.99 -2.49 -27.49 16 13 C 0.56 19.80 7.78 86.79 0.68 20.48 16 14 O -0.58 -23.17 16.42 -3.88 -0.06 -23.24 16 15 C -0.20 -5.97 5.89 -19.99 -0.12 -6.09 16 16 C -0.03 -0.65 9.72 22.73 0.22 -0.43 16 17 C -0.17 -2.82 10.10 22.33 0.23 -2.59 16 18 C 0.12 2.28 11.17 84.70 0.95 3.22 16 19 N -0.51 -14.20 10.35 -194.75 -2.01 -16.22 16 20 C 0.13 3.91 10.71 85.02 0.91 4.82 16 21 N -0.72 -33.55 3.18 -326.51 -1.04 -34.59 16 22 C -0.23 -11.91 9.92 84.03 0.83 -11.07 16 23 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 24 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 25 N -0.96 -55.87 13.06 21.65 0.28 -55.59 16 26 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 30 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 31 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 33 H 0.15 2.93 6.30 -2.91 -0.02 2.91 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.11 4.86 7.14 -2.91 -0.02 4.84 16 37 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.41 14.62 6.21 -92.71 -0.58 14.04 16 40 H 0.15 3.37 7.74 -2.91 -0.02 3.35 16 41 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.15 4.73 6.42 -2.91 -0.02 4.71 16 44 H 0.38 19.20 7.80 -92.71 -0.72 18.47 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -69.91 384.68 2.28 -67.63 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: -0.26 Total: 48.23 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.73 Total: 4.84 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -5.26 Total: -133.89 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.96 Total: -33.91 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.91 2.28 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.252 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds