Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 117.00091 * 2 1 4 4 C 1.38754 * 120.05478 * 0.25267 * 3 2 1 5 5 C 1.38124 * 119.94157 * 180.27302 * 4 3 2 6 6 C 1.38285 * 120.05670 * 359.72757 * 5 4 3 7 7 C 1.38248 * 120.11190 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05291 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.02352 * 180.02562 * 8 7 6 10 10 H 1.09010 * 109.47306 * 144.99991 * 9 8 7 11 11 C 1.53001 * 109.47133 * 264.99349 * 9 8 7 12 12 N 1.46492 * 109.47450 * 175.00098 * 11 9 8 13 13 C 1.34781 * 120.00146 * 180.02562 * 12 11 9 14 14 O 1.21553 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.47844 * 120.00009 * 180.02562 * 13 12 11 16 16 C 1.40021 * 120.55803 * 180.27582 * 15 13 12 17 17 C 1.38356 * 118.28930 * 180.24574 * 16 15 13 18 18 C 1.38352 * 119.30108 * 359.45848 * 17 16 15 19 19 N 1.31932 * 121.08122 * 0.30529 * 18 17 16 20 20 C 1.31691 * 121.87508 * 359.97091 * 19 18 17 21 21 N 1.46493 * 109.47741 * 24.99779 * 9 8 7 22 22 C 1.36936 * 120.00206 * 84.99981 * 21 9 8 23 23 H 1.07997 * 120.00207 * 0.02562 * 22 21 9 24 24 C 1.38817 * 120.00223 * 180.02562 * 22 21 9 25 25 N 1.31616 * 119.99952 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99847 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47160 * 89.99846 * 26 24 22 28 28 H 1.48498 * 109.46786 * 209.99793 * 26 24 22 29 29 H 1.48498 * 109.46952 * 329.99855 * 26 24 22 30 30 H 1.08999 * 109.47122 * 59.99547 * 1 2 3 31 31 H 1.08993 * 109.47215 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46759 * 300.00232 * 1 2 3 33 33 H 1.08001 * 120.03562 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.97394 * 179.74276 * 5 4 3 35 35 H 1.08004 * 119.94779 * 180.02562 * 6 5 4 36 36 H 1.08003 * 119.97260 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.46656 * 55.00373 * 11 9 8 38 38 H 1.08996 * 109.47492 * 295.00542 * 11 9 8 39 39 H 0.96999 * 120.00480 * 0.02562 * 12 11 9 40 40 H 1.08004 * 120.85972 * 359.97438 * 16 15 13 41 41 H 1.08002 * 120.35338 * 179.74185 * 17 16 15 42 42 H 1.08003 * 119.46505 * 180.28229 * 18 17 16 43 43 H 1.08005 * 119.71425 * 180.02562 * 20 19 18 44 44 H 0.97001 * 120.00010 * 265.00481 * 21 9 8 45 45 H 0.97005 * 120.00016 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 -0.0004 6 6 3.3020 3.6758 -0.0057 7 6 4.0561 2.5170 -0.0058 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0222 0.0003 10 1 3.7489 -0.7403 0.5938 11 6 4.4213 -0.4778 -1.4360 12 7 5.3186 -1.6358 -1.4484 13 6 5.6146 -2.2465 -2.6129 14 8 5.1375 -1.8362 -3.6528 15 6 6.5197 -3.4154 -2.6254 16 6 6.8397 -4.0552 -3.8291 17 6 7.6871 -5.1480 -3.7857 18 6 8.1955 -5.5627 -2.5676 19 7 7.8804 -4.9372 -1.4496 20 6 7.0739 -3.8962 -1.4386 21 7 5.5713 0.2978 0.5783 22 6 5.7458 0.2558 1.9358 23 1 4.9123 0.0191 2.5804 24 6 6.9942 0.5175 2.4836 25 7 7.1620 0.4766 3.7884 26 14 8.4359 0.9277 1.3688 27 1 8.4960 2.3963 1.1574 28 1 9.6977 0.4667 2.0016 29 1 8.2601 0.2461 0.0612 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2129 2.3205 0.0098 34 1 1.3341 4.5114 -0.0005 35 1 3.7924 4.6380 -0.0098 36 1 5.1345 2.5751 -0.0104 37 1 4.8451 0.3167 -2.0501 38 1 3.4495 -0.7670 -1.8358 39 1 5.6997 -1.9630 -0.6186 40 1 6.4319 -3.7074 -4.7667 41 1 7.9527 -5.6690 -4.6937 42 1 8.8609 -6.4126 -2.5313 43 1 6.8398 -3.4101 -0.5030 44 1 6.3201 0.5101 -0.0006 45 1 8.0343 0.6599 4.1712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198492578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -9.168785 kcal Electronic energy + Delta-G solvation = -29291.422980 eV Core-core repulsion = 25274.113048 eV Total energy + Delta-G solvation = -4017.309933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67400 -41.16396 -40.04936 -38.55432 -37.43627 -35.39743 -33.95709 -33.54595 -32.46136 -31.82260 -30.95989 -29.26529 -27.98796 -26.06259 -25.03397 -24.53830 -23.92950 -22.83396 -21.77667 -21.53825 -19.97183 -19.19398 -18.72758 -17.90796 -17.51515 -17.32794 -16.89117 -16.57317 -16.49854 -16.26730 -16.18869 -15.89104 -15.36773 -15.19125 -14.99701 -14.72186 -14.59169 -14.40905 -14.17879 -14.15452 -14.09880 -13.54240 -13.20195 -13.07306 -12.94299 -12.76733 -12.52002 -12.36880 -12.02039 -11.91093 -11.83219 -11.71264 -11.40544 -11.03711 -11.00503 -10.49849 -10.36805 -10.09193 -9.71835 -9.38706 -8.99098 -7.99711 -5.35277 -0.41178 0.17877 0.49029 0.59497 1.38070 1.38729 1.46085 1.75594 2.05183 2.47433 2.48702 2.81573 2.91171 3.27104 3.32286 3.44283 3.69015 3.79105 3.89017 3.91147 3.99178 4.05434 4.10739 4.24894 4.34462 4.37893 4.43503 4.45229 4.55831 4.60868 4.64134 4.70618 4.76823 4.86547 4.98742 4.98846 5.08438 5.17562 5.29704 5.44705 5.56913 5.60015 5.74456 5.82378 5.98937 6.22488 6.38845 6.56819 6.82715 7.02562 7.06645 7.77944 7.99339 9.21529 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.004145 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.700167 B = 6753.873399 C = 8867.643680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.170 4.170 7 C -0.070 4.070 8 C -0.142 4.142 9 C 0.222 3.778 10 H 0.064 0.936 11 C 0.134 3.866 12 N -0.709 5.709 13 C 0.561 3.439 14 O -0.573 6.573 15 C -0.201 4.201 16 C -0.026 4.026 17 C -0.165 4.165 18 C 0.118 3.882 19 N -0.512 5.512 20 C 0.127 3.873 21 N -0.737 5.737 22 C -0.216 4.216 23 H 0.057 0.943 24 C -0.047 4.047 25 N -0.978 5.978 26 Si 0.939 3.061 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.253 1.253 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.153 0.847 41 H 0.183 0.817 42 H 0.196 0.804 43 H 0.156 0.844 44 H 0.366 0.634 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 -5.420 -15.860 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.189 4.189 7 C -0.088 4.088 8 C -0.146 4.146 9 C 0.113 3.887 10 H 0.082 0.918 11 C 0.010 3.990 12 N -0.360 5.360 13 C 0.349 3.651 14 O -0.454 6.454 15 C -0.206 4.206 16 C -0.052 4.052 17 C -0.184 4.184 18 C -0.039 4.039 19 N -0.221 5.221 20 C -0.031 4.031 21 N -0.379 5.379 22 C -0.347 4.347 23 H 0.075 0.925 24 C -0.239 4.239 25 N -0.628 5.628 26 Si 0.767 3.233 27 H -0.209 1.209 28 H -0.227 1.227 29 H -0.178 1.178 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.170 0.830 41 H 0.201 0.799 42 H 0.213 0.787 43 H 0.173 0.827 44 H 0.200 0.800 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.039 -5.654 -15.551 18.396 hybrid contribution 0.707 0.889 -0.150 1.146 sum -7.332 -4.765 -15.701 17.972 Atomic orbital electron populations 1.23305 0.76774 1.05243 1.02160 1.86057 1.23206 1.26822 1.88709 1.19002 0.91500 0.85190 0.97200 1.21459 1.00917 0.91815 1.08981 1.21228 0.94230 0.97915 0.96929 1.21303 0.94775 0.98317 1.04467 1.20890 1.00023 0.91715 0.96201 1.20094 0.91209 0.97147 1.06100 1.19156 0.85175 0.92640 0.91752 0.91820 1.21463 0.93968 0.87232 0.96362 1.45942 1.48568 1.31675 1.09787 1.18344 0.80606 0.82862 0.83332 1.90720 1.55043 1.66933 1.32748 1.20946 1.03342 0.99395 0.96908 1.21969 0.93005 0.92779 0.97485 1.22559 0.97597 0.96974 1.01268 1.23723 0.95227 0.97656 0.87268 1.67772 1.13599 1.08279 1.32446 1.23089 0.90895 0.91822 0.97293 1.42691 1.06732 1.85133 1.03386 1.18819 0.95062 1.38303 0.82503 0.92532 1.25256 0.99764 1.02572 0.96357 1.69853 1.23737 1.57944 1.11305 0.85663 0.79865 0.78302 0.79426 1.20861 1.22669 1.17813 0.91328 0.86802 0.92063 0.83027 0.83002 0.84710 0.86924 0.91963 0.90282 0.75229 0.82961 0.79938 0.78747 0.82681 0.80045 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.85 9.64 -92.45 -0.89 -10.74 16 3 C 0.12 3.73 6.66 22.50 0.15 3.88 16 4 C -0.21 -5.57 9.04 22.37 0.20 -5.37 16 5 C -0.09 -2.16 10.04 22.25 0.22 -1.93 16 6 C -0.17 -5.08 10.04 22.28 0.22 -4.86 16 7 C -0.07 -2.52 9.32 22.26 0.21 -2.31 16 8 C -0.14 -5.16 5.04 -19.77 -0.10 -5.26 16 9 C 0.22 8.39 2.37 44.24 0.10 8.49 16 10 H 0.06 2.60 7.64 -2.38 -0.02 2.58 16 11 C 0.13 4.53 5.21 86.38 0.45 4.98 16 12 N -0.71 -23.04 5.34 -465.99 -2.49 -25.53 16 13 C 0.56 18.18 7.78 86.79 0.68 18.85 16 14 O -0.57 -21.22 16.42 -3.88 -0.06 -21.28 16 15 C -0.20 -5.52 5.89 -19.99 -0.12 -5.63 16 16 C -0.03 -0.56 9.72 22.73 0.22 -0.34 16 17 C -0.16 -2.53 10.10 22.33 0.23 -2.30 16 18 C 0.12 2.10 11.17 84.70 0.95 3.05 16 19 N -0.51 -13.34 10.35 -194.75 -2.01 -15.36 16 20 C 0.13 3.52 10.71 85.02 0.91 4.43 16 21 N -0.74 -32.07 3.10 -326.51 -1.01 -33.08 16 22 C -0.22 -11.60 10.40 84.03 0.87 -10.72 16 23 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 24 C -0.05 -2.68 5.50 84.86 0.47 -2.21 16 25 N -0.98 -60.99 13.97 21.65 0.30 -60.69 16 26 Si 0.94 44.29 27.74 68.60 1.90 46.19 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 30 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.04 7.65 -2.38 -0.02 1.02 16 33 H 0.15 2.92 6.30 -2.91 -0.02 2.90 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.11 4.37 7.26 -2.91 -0.02 4.35 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.41 13.30 6.21 -92.71 -0.58 12.72 16 40 H 0.15 3.06 7.74 -2.91 -0.02 3.04 16 41 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.16 4.36 6.42 -2.91 -0.02 4.34 16 44 H 0.37 15.64 5.66 -92.71 -0.52 15.12 16 45 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -74.38 381.67 2.39 -71.99 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.12 Total: 44.28 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.78 Total: 4.21 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.21 Total: -134.66 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.95 Total: -32.02 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.19 kcal Total: -74.38 2.39 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.823 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds