Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99859 * 2 1 4 4 C 1.38749 * 120.05660 * 0.25544 * 3 2 1 5 5 C 1.38126 * 119.94459 * 180.27019 * 4 3 2 6 6 C 1.38285 * 120.05474 * 359.72982 * 5 4 3 7 7 C 1.38243 * 120.11069 * 0.02562 * 6 5 4 8 8 C 1.38158 * 120.05752 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02978 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46952 * 220.00644 * 9 8 7 11 11 C 1.52996 * 109.46982 * 100.00057 * 9 8 7 12 12 N 1.46501 * 109.46867 * 184.99959 * 11 9 8 13 13 C 1.34780 * 119.99775 * 180.02562 * 12 11 9 14 14 O 1.21506 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.48175 * 119.99946 * 180.02562 * 13 12 11 16 16 C 1.39302 * 119.72217 * 179.97438 * 15 13 12 17 17 C 1.38596 * 119.05879 * 179.97438 * 16 15 13 18 18 C 1.38630 * 118.48552 * 0.02562 * 17 16 15 19 19 C 1.38558 * 119.35539 * 0.25409 * 18 17 16 20 20 N 1.31532 * 120.90059 * 359.49177 * 19 18 17 21 21 N 1.46497 * 109.46936 * 339.99916 * 9 8 7 22 22 C 1.36937 * 120.00609 * 274.99836 * 21 9 8 23 23 H 1.08002 * 119.99690 * 0.02562 * 22 21 9 24 24 C 1.38806 * 120.00486 * 179.97438 * 22 21 9 25 25 N 1.31619 * 120.00455 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99823 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47122 * 89.99702 * 26 24 22 28 28 H 1.48501 * 109.47192 * 209.99861 * 26 24 22 29 29 H 1.48501 * 109.47058 * 329.99697 * 26 24 22 30 30 H 1.09000 * 109.46955 * 299.99560 * 1 2 3 31 31 H 1.08992 * 109.47449 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.03057 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97183 * 179.74781 * 5 4 3 35 35 H 1.07999 * 119.94255 * 180.02562 * 6 5 4 36 36 H 1.08008 * 119.97155 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47139 * 65.00456 * 11 9 8 38 38 H 1.08996 * 109.47421 * 305.00300 * 11 9 8 39 39 H 0.97001 * 120.00408 * 0.02562 * 12 11 9 40 40 H 1.07999 * 120.47540 * 359.97438 * 16 15 13 41 41 H 1.07999 * 120.75338 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.31909 * 179.97438 * 18 17 16 43 43 H 1.07995 * 119.54967 * 179.74631 * 19 18 17 44 44 H 0.97005 * 119.99582 * 95.00000 * 21 9 8 45 45 H 0.96996 * 119.99902 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 -0.0011 10 1 3.7895 -0.7134 -0.6580 11 6 4.3287 -0.5386 1.4204 12 7 5.2248 -1.6973 1.4416 13 6 5.4448 -2.3580 2.5956 14 8 4.8996 -1.9929 3.6182 15 6 6.3517 -3.5297 2.6172 16 6 6.5753 -4.2080 3.8132 17 6 7.4257 -5.3024 3.8175 18 6 8.0234 -5.6800 2.6251 19 6 7.7599 -4.9554 1.4738 20 7 6.9447 -3.9234 1.4970 21 7 5.6056 0.3205 -0.4803 22 6 5.8678 0.3361 -1.8242 23 1 5.0779 0.1289 -2.5310 24 6 7.1486 0.6192 -2.2783 25 7 7.4006 0.6347 -3.5701 26 14 8.5148 0.9783 -1.0559 27 1 9.1942 -0.2894 -0.6863 28 1 9.4981 1.9059 -1.6708 29 1 7.9382 1.6039 0.1612 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3204 0.0099 34 1 1.3339 4.5114 -0.0003 35 1 3.7921 4.6381 -0.0096 36 1 5.1344 2.5753 -0.0096 37 1 3.3333 -0.8432 1.7438 38 1 4.7106 0.2285 2.0940 39 1 5.6599 -1.9891 0.6252 40 1 6.0930 -3.8857 4.7241 41 1 7.6183 -5.8485 4.7292 42 1 8.6915 -6.5280 2.5947 43 1 8.2270 -5.2443 0.5440 44 1 6.3150 0.5069 0.1545 45 1 8.2957 0.8322 -3.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198492608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 13.880901 kcal Electronic energy + Delta-G solvation = -29288.147619 eV Core-core repulsion = 25271.837196 eV Total energy + Delta-G solvation = -4016.310423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55125 -39.95642 -38.76032 -37.25619 -35.95280 -33.75520 -32.67213 -31.97349 -31.42633 -30.13408 -29.72737 -27.91540 -27.00092 -24.83634 -23.64649 -23.18201 -22.60545 -21.57287 -20.47473 -20.10180 -18.27557 -17.87579 -17.35785 -16.76776 -16.09194 -15.96144 -15.65701 -15.43420 -15.23458 -14.98306 -14.86708 -14.49888 -13.98707 -13.93981 -13.75684 -13.48586 -13.34964 -13.05439 -12.87971 -12.78146 -12.43913 -12.28602 -12.07980 -11.73964 -11.41420 -11.08252 -10.90763 -10.82934 -10.77526 -10.53279 -10.19690 -10.14857 -10.10792 -9.59653 -9.51441 -9.32417 -9.04806 -8.69791 -8.37138 -7.75871 -7.37210 -5.79035 -3.17333 0.59379 1.10173 1.77243 1.86122 2.85614 3.32878 3.36432 3.40022 3.44953 3.55536 3.87766 4.16499 4.22019 4.56321 4.65546 4.78925 4.84807 4.93917 5.02161 5.06957 5.23820 5.26629 5.31525 5.37563 5.45372 5.49658 5.54197 5.60343 5.63270 5.80443 5.83142 5.84648 5.91195 5.95426 6.16904 6.21814 6.38506 6.45410 6.54654 6.68309 6.76148 6.87605 7.11458 7.27339 7.60579 7.72967 7.93892 7.96250 8.38567 8.42826 9.15335 9.86903 10.04931 11.38789 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.004198 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.271837 B = 6668.263343 C = 8880.250476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.093 4.093 6 C -0.163 4.163 7 C -0.045 4.045 8 C -0.115 4.115 9 C 0.215 3.785 10 H 0.080 0.920 11 C 0.118 3.882 12 N -0.693 5.693 13 C 0.565 3.435 14 O -0.546 6.546 15 C 0.084 3.916 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.156 4.156 19 C 0.100 3.900 20 N -0.451 5.451 21 N -0.741 5.741 22 C -0.243 4.243 23 H 0.092 0.908 24 C 0.013 3.987 25 N -0.929 5.929 26 Si 0.876 3.124 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.421 0.579 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.164 0.836 44 H 0.363 0.637 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -7.184 12.624 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.079 3.921 4 C -0.236 4.236 5 C -0.111 4.111 6 C -0.181 4.181 7 C -0.063 4.063 8 C -0.119 4.119 9 C 0.104 3.896 10 H 0.098 0.902 11 C -0.006 4.006 12 N -0.344 5.344 13 C 0.349 3.651 14 O -0.424 6.424 15 C -0.055 4.055 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.176 4.176 19 C -0.059 4.059 20 N -0.162 5.162 21 N -0.383 5.383 22 C -0.372 4.372 23 H 0.110 0.890 24 C -0.183 4.183 25 N -0.576 5.576 26 Si 0.707 3.293 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.260 0.740 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.181 0.819 44 H 0.197 0.803 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.442 -6.631 12.279 15.816 hybrid contribution 1.221 -0.021 0.974 1.562 sum -6.221 -6.652 13.254 16.081 Atomic orbital electron populations 1.22967 0.79287 1.03412 1.00901 1.86090 1.20570 1.27102 1.88865 1.18905 0.91849 0.83902 0.97428 1.21058 0.99280 0.92566 1.10692 1.20792 0.94675 0.96505 0.99122 1.21055 0.93780 0.98457 1.04811 1.20978 1.00888 0.90478 0.93982 1.20263 0.90019 0.97912 1.03714 1.19191 0.86156 0.91936 0.92275 0.90248 1.21682 0.93848 0.87109 0.97987 1.45896 1.46769 1.30086 1.11633 1.17882 0.81069 0.82210 0.83974 1.90748 1.50868 1.67662 1.33114 1.21284 0.97504 0.96616 0.90070 1.22124 0.97443 0.94915 0.99235 1.21604 0.95024 0.95760 0.98709 1.22383 1.00363 1.01023 0.93794 1.22893 0.93900 0.90460 0.98669 1.67663 1.06444 1.13698 1.28424 1.42850 1.04992 1.85190 1.05253 1.19012 0.95891 1.40904 0.81431 0.88998 1.24607 0.96909 1.01459 0.95309 1.69690 1.20867 1.55365 1.11666 0.86692 0.83350 0.78212 0.81073 1.20901 1.21811 1.20383 0.93095 0.92993 0.88681 0.86244 0.86673 0.86525 0.84696 0.90580 0.91627 0.74036 0.83533 0.84248 0.84329 0.81904 0.80332 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.85 9.71 -19.43 -0.19 -5.04 16 3 C 0.12 2.09 6.66 -39.22 -0.26 1.83 16 4 C -0.22 -3.19 9.04 -39.43 -0.36 -3.55 16 5 C -0.09 -1.34 10.04 -39.60 -0.40 -1.74 16 6 C -0.16 -2.62 10.04 -39.56 -0.40 -3.01 16 7 C -0.05 -0.84 9.32 -39.61 -0.37 -1.21 16 8 C -0.11 -2.14 5.06 -104.47 -0.53 -2.67 16 9 C 0.21 4.16 2.32 -69.08 -0.16 4.00 16 10 H 0.08 1.63 7.78 -51.93 -0.40 1.23 16 11 C 0.12 2.09 5.21 -4.04 -0.02 2.07 16 12 N -0.69 -12.28 5.38 -61.15 -0.33 -12.61 16 13 C 0.56 9.88 7.81 -12.18 -0.10 9.78 16 14 O -0.55 -10.46 16.32 5.36 0.09 -10.37 16 15 C 0.08 1.28 6.75 -83.01 -0.56 0.72 16 16 C -0.12 -1.43 9.63 -39.05 -0.38 -1.81 16 17 C -0.08 -0.79 10.17 -39.30 -0.40 -1.19 16 18 C -0.16 -1.41 10.11 -39.32 -0.40 -1.80 16 19 C 0.10 1.17 11.18 -17.56 -0.20 0.97 16 20 N -0.45 -6.85 9.54 -9.80 -0.09 -6.95 16 21 N -0.74 -16.50 2.97 -54.55 -0.16 -16.66 16 22 C -0.24 -6.48 10.40 -15.06 -0.16 -6.64 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 24 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 25 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 26 Si 0.88 21.59 27.74 -169.99 -4.71 16.87 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 30 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 31 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.12 1.42 6.30 -52.48 -0.33 1.09 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.14 2.70 7.14 -52.48 -0.37 2.33 16 37 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.42 7.81 7.47 -40.82 -0.30 7.50 16 40 H 0.15 1.69 7.64 -52.49 -0.40 1.29 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -33.27 383.82 -8.44 -41.70 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -5.82 Total: 17.50 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.78 Total: -2.66 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.19 Total: -63.79 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.10 Total: -15.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.27 -8.44 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.581 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds