Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99859 * 2 1 4 4 C 1.38749 * 120.05660 * 0.25544 * 3 2 1 5 5 C 1.38126 * 119.94459 * 180.27019 * 4 3 2 6 6 C 1.38285 * 120.05474 * 359.72982 * 5 4 3 7 7 C 1.38243 * 120.11069 * 0.02562 * 6 5 4 8 8 C 1.38158 * 120.05752 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02978 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46952 * 220.00644 * 9 8 7 11 11 C 1.52996 * 109.46982 * 100.00057 * 9 8 7 12 12 N 1.46501 * 109.46867 * 184.99959 * 11 9 8 13 13 C 1.34780 * 119.99775 * 180.02562 * 12 11 9 14 14 O 1.21506 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.48175 * 119.99946 * 180.02562 * 13 12 11 16 16 C 1.39302 * 119.72217 * 179.97438 * 15 13 12 17 17 C 1.38596 * 119.05879 * 179.97438 * 16 15 13 18 18 C 1.38630 * 118.48552 * 0.02562 * 17 16 15 19 19 C 1.38558 * 119.35539 * 0.25409 * 18 17 16 20 20 N 1.31532 * 120.90059 * 359.49177 * 19 18 17 21 21 N 1.46497 * 109.46936 * 339.99916 * 9 8 7 22 22 C 1.36937 * 120.00609 * 274.99836 * 21 9 8 23 23 H 1.08002 * 119.99690 * 0.02562 * 22 21 9 24 24 C 1.38806 * 120.00486 * 179.97438 * 22 21 9 25 25 N 1.31619 * 120.00455 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99823 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47122 * 89.99702 * 26 24 22 28 28 H 1.48501 * 109.47192 * 209.99861 * 26 24 22 29 29 H 1.48501 * 109.47058 * 329.99697 * 26 24 22 30 30 H 1.09000 * 109.46955 * 299.99560 * 1 2 3 31 31 H 1.08992 * 109.47449 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.03057 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97183 * 179.74781 * 5 4 3 35 35 H 1.07999 * 119.94255 * 180.02562 * 6 5 4 36 36 H 1.08008 * 119.97155 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47139 * 65.00456 * 11 9 8 38 38 H 1.08996 * 109.47421 * 305.00300 * 11 9 8 39 39 H 0.97001 * 120.00408 * 0.02562 * 12 11 9 40 40 H 1.07999 * 120.47540 * 359.97438 * 16 15 13 41 41 H 1.07999 * 120.75338 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.31909 * 179.97438 * 18 17 16 43 43 H 1.07995 * 119.54967 * 179.74631 * 19 18 17 44 44 H 0.97005 * 119.99582 * 95.00000 * 21 9 8 45 45 H 0.96996 * 119.99902 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 -0.0011 10 1 3.7895 -0.7134 -0.6580 11 6 4.3287 -0.5386 1.4204 12 7 5.2248 -1.6973 1.4416 13 6 5.4448 -2.3580 2.5956 14 8 4.8996 -1.9929 3.6182 15 6 6.3517 -3.5297 2.6172 16 6 6.5753 -4.2080 3.8132 17 6 7.4257 -5.3024 3.8175 18 6 8.0234 -5.6800 2.6251 19 6 7.7599 -4.9554 1.4738 20 7 6.9447 -3.9234 1.4970 21 7 5.6056 0.3205 -0.4803 22 6 5.8678 0.3361 -1.8242 23 1 5.0779 0.1289 -2.5310 24 6 7.1486 0.6192 -2.2783 25 7 7.4006 0.6347 -3.5701 26 14 8.5148 0.9783 -1.0559 27 1 9.1942 -0.2894 -0.6863 28 1 9.4981 1.9059 -1.6708 29 1 7.9382 1.6039 0.1612 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3204 0.0099 34 1 1.3339 4.5114 -0.0003 35 1 3.7921 4.6381 -0.0096 36 1 5.1344 2.5753 -0.0096 37 1 3.3333 -0.8432 1.7438 38 1 4.7106 0.2285 2.0940 39 1 5.6599 -1.9891 0.6252 40 1 6.0930 -3.8857 4.7241 41 1 7.6183 -5.8485 4.7292 42 1 8.6915 -6.5280 2.5947 43 1 8.2270 -5.2443 0.5440 44 1 6.3150 0.5069 0.1545 45 1 8.2957 0.8322 -3.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198492608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = -8.783547 kcal Electronic energy + Delta-G solvation = -29289.130424 eV Core-core repulsion = 25271.837196 eV Total energy + Delta-G solvation = -4017.293228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64241 -41.17189 -39.98750 -38.55859 -37.43354 -35.37265 -33.99442 -33.37385 -32.42010 -31.82659 -30.96667 -29.33079 -27.99909 -26.13267 -25.01460 -24.45862 -23.93360 -22.82294 -21.75432 -21.57610 -19.97793 -19.21560 -18.71036 -17.84502 -17.36279 -17.07605 -16.82627 -16.58087 -16.52971 -16.30293 -16.19087 -15.94602 -15.40975 -15.20184 -15.07109 -14.67529 -14.62419 -14.53298 -14.16751 -14.10090 -14.02561 -13.54997 -13.06159 -12.94219 -12.90334 -12.76136 -12.53200 -12.31893 -12.11978 -11.91265 -11.83372 -11.69795 -11.45761 -11.04993 -10.96381 -10.51510 -10.34173 -10.05228 -9.71233 -9.38930 -8.99457 -8.00113 -5.35207 -0.36315 0.26708 0.48927 0.59240 1.36340 1.38796 1.43931 1.67421 2.06824 2.46974 2.48422 2.87423 2.91020 3.13863 3.30703 3.44372 3.80997 3.89949 3.96874 4.04018 4.05459 4.09252 4.10660 4.22903 4.34988 4.37198 4.45115 4.50034 4.55500 4.61201 4.68676 4.76407 4.76988 4.86692 4.98671 5.06487 5.14023 5.17748 5.32087 5.43964 5.59765 5.64656 5.74129 5.82258 5.99695 6.22223 6.37007 6.56781 6.80494 7.05207 7.07573 7.77534 7.98762 9.21290 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.004198 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.271837 B = 6668.263343 C = 8880.250476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.170 4.170 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.223 3.777 10 H 0.060 0.940 11 C 0.132 3.868 12 N -0.698 5.698 13 C 0.562 3.438 14 O -0.570 6.570 15 C 0.048 3.952 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.133 4.133 19 C 0.082 3.918 20 N -0.489 5.489 21 N -0.736 5.736 22 C -0.216 4.216 23 H 0.056 0.944 24 C -0.047 4.047 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.281 1.281 28 H -0.297 1.297 29 H -0.260 1.260 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.416 0.584 40 H 0.149 0.851 41 H 0.182 0.818 42 H 0.183 0.817 43 H 0.181 0.819 44 H 0.365 0.635 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -7.947 14.903 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.188 4.188 7 C -0.088 4.088 8 C -0.147 4.147 9 C 0.114 3.886 10 H 0.078 0.922 11 C 0.008 3.992 12 N -0.348 5.348 13 C 0.348 3.652 14 O -0.450 6.450 15 C -0.089 4.089 16 C -0.140 4.140 17 C -0.101 4.101 18 C -0.152 4.152 19 C -0.077 4.077 20 N -0.201 5.201 21 N -0.379 5.379 22 C -0.346 4.346 23 H 0.074 0.926 24 C -0.239 4.239 25 N -0.628 5.628 26 Si 0.769 3.231 27 H -0.207 1.207 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.253 0.747 40 H 0.167 0.833 41 H 0.199 0.801 42 H 0.200 0.800 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.056 -7.399 14.609 18.251 hybrid contribution 1.248 0.094 0.269 1.280 sum -6.809 -7.305 14.878 17.919 Atomic orbital electron populations 1.23309 0.76731 1.05237 1.02227 1.86064 1.23266 1.26842 1.88704 1.18992 0.91379 0.85251 0.97214 1.21457 1.00929 0.91719 1.08984 1.21238 0.94140 0.97956 0.96833 1.21303 0.94812 0.98226 1.04507 1.20917 1.00093 0.91736 0.96057 1.20090 0.91260 0.97061 1.06322 1.19121 0.84538 0.92322 0.92592 0.92195 1.21495 0.94104 0.87044 0.96580 1.45928 1.46898 1.30211 1.11769 1.18349 0.80949 0.82654 0.83230 1.90707 1.52052 1.68649 1.33620 1.21015 0.99136 0.97138 0.91594 1.22291 0.97974 0.95633 0.98099 1.22092 0.93168 0.94386 1.00501 1.22846 0.99158 1.00835 0.92362 1.23389 0.93534 0.90053 1.00764 1.67537 1.07935 1.15634 1.28974 1.42682 1.06485 1.85263 1.03475 1.18824 0.94676 1.38400 0.82722 0.92552 1.25230 0.99272 1.02542 0.96821 1.69851 1.21261 1.57908 1.13798 0.85637 0.80150 0.77864 0.79416 1.20749 1.22360 1.18461 0.91304 0.91925 0.86855 0.82872 0.82839 0.84694 0.87055 0.90186 0.92068 0.74651 0.83350 0.80100 0.79999 0.80198 0.80192 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -10.28 9.71 -92.45 -0.90 -11.18 16 3 C 0.12 3.89 6.66 22.51 0.15 4.04 16 4 C -0.21 -5.71 9.04 22.37 0.20 -5.51 16 5 C -0.08 -2.19 10.04 22.25 0.22 -1.97 16 6 C -0.17 -5.30 10.04 22.28 0.22 -5.08 16 7 C -0.07 -2.65 9.32 22.25 0.21 -2.45 16 8 C -0.14 -5.51 5.06 -19.77 -0.10 -5.61 16 9 C 0.22 9.10 2.32 44.25 0.10 9.20 16 10 H 0.06 2.65 7.78 -2.39 -0.02 2.63 16 11 C 0.13 4.89 5.21 86.38 0.45 5.34 16 12 N -0.70 -25.99 5.38 -465.67 -2.50 -28.49 16 13 C 0.56 20.42 7.81 86.88 0.68 21.10 16 14 O -0.57 -22.50 16.32 -3.74 -0.06 -22.56 16 15 C 0.05 1.49 6.75 41.91 0.28 1.77 16 16 C -0.12 -2.79 9.63 22.61 0.22 -2.57 16 17 C -0.08 -1.15 10.17 22.45 0.23 -0.92 16 18 C -0.13 -1.90 10.11 22.44 0.23 -1.68 16 19 C 0.08 1.79 11.18 84.81 0.95 2.74 16 20 N -0.49 -14.97 9.54 -184.91 -1.76 -16.73 16 21 N -0.74 -34.31 2.97 -326.51 -0.97 -35.28 16 22 C -0.22 -12.08 10.40 84.03 0.87 -11.20 16 23 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 24 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16 25 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 26 Si 0.94 46.03 27.74 68.60 1.90 47.93 16 27 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 29 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 30 H 0.07 1.10 7.65 -2.39 -0.02 1.08 16 31 H 0.06 1.09 7.67 -2.39 -0.02 1.07 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.15 3.02 6.30 -2.91 -0.02 3.01 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.11 4.67 7.14 -2.91 -0.02 4.65 16 37 H 0.08 2.88 8.13 -2.39 -0.02 2.86 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.42 16.34 7.47 -92.71 -0.69 15.65 16 40 H 0.15 3.32 7.64 -2.91 -0.02 3.30 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 43 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.36 16.84 5.66 -92.70 -0.52 16.32 16 45 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.35 383.82 2.26 -75.09 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -0.24 Total: 46.59 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.50 Total: 6.44 kcal Atomic # 7 Polarization: -137.37 SS G_CDS: -4.94 Total: -142.30 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.96 Total: -33.74 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -77.35 2.26 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.302 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds