Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99648 * 2 1 4 4 C 1.38745 * 120.05708 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94733 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05139 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11033 * 359.74292 * 6 5 4 8 8 C 1.38158 * 120.05570 * 0.50967 * 7 6 5 9 9 C 1.50697 * 120.02728 * 179.76657 * 8 7 6 10 10 H 1.09005 * 109.47238 * 224.24179 * 9 8 7 11 11 C 1.53003 * 109.47516 * 344.24193 * 9 8 7 12 12 N 1.46493 * 109.47242 * 175.00010 * 11 9 8 13 13 C 1.34781 * 119.99999 * 180.02562 * 12 11 9 14 14 O 1.21517 * 119.99680 * 0.02562 * 13 12 11 15 15 C 1.48166 * 120.00168 * 179.97438 * 13 12 11 16 16 C 1.39312 * 119.72213 * 180.02562 * 15 13 12 17 17 C 1.38589 * 119.05765 * 179.97438 * 16 15 13 18 18 C 1.38624 * 118.48792 * 0.02562 * 17 16 15 19 19 C 1.38562 * 119.35469 * 0.27518 * 18 17 16 20 20 N 1.31523 * 120.89999 * 359.42498 * 19 18 17 21 21 N 1.46498 * 109.47059 * 104.24295 * 9 8 7 22 22 C 1.36929 * 120.00203 * 300.00150 * 21 9 8 23 23 H 1.08000 * 119.99921 * 4.93350 * 22 21 9 24 24 C 1.38812 * 120.00255 * 184.93958 * 22 21 9 25 25 N 1.31615 * 120.00066 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00210 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47201 * 89.99599 * 26 24 22 28 28 H 1.48498 * 109.47112 * 209.99906 * 26 24 22 29 29 H 1.48507 * 109.46669 * 329.99677 * 26 24 22 30 30 H 1.08993 * 109.47531 * 300.00180 * 1 2 3 31 31 H 1.09007 * 109.47073 * 60.00494 * 1 2 3 32 32 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.03091 * 359.95467 * 4 3 2 34 34 H 1.07995 * 119.98080 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94214 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.96720 * 180.25752 * 7 6 5 37 37 H 1.09004 * 109.46446 * 55.00114 * 11 9 8 38 38 H 1.09004 * 109.46966 * 295.00510 * 11 9 8 39 39 H 0.96993 * 120.00343 * 359.97438 * 12 11 9 40 40 H 1.07997 * 120.46925 * 359.95528 * 16 15 13 41 41 H 1.08002 * 120.75312 * 180.02562 * 17 16 15 42 42 H 1.08001 * 120.32380 * 179.97438 * 18 17 16 43 43 H 1.07995 * 119.54553 * 179.69561 * 19 18 17 44 44 H 0.97006 * 119.99988 * 120.00433 * 21 9 8 45 45 H 0.97003 * 120.00400 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0048 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0016 10 1 3.8378 -0.6820 -0.7221 11 6 5.6968 0.3538 -0.3872 12 7 6.5221 -0.8510 -0.2722 13 6 7.8370 -0.7975 -0.5632 14 8 8.3380 0.2504 -0.9205 15 6 8.6719 -2.0159 -0.4464 16 6 10.0305 -1.9538 -0.7481 17 6 10.7986 -3.1017 -0.6337 18 6 10.1808 -4.2723 -0.2218 19 6 8.8233 -4.2626 0.0558 20 7 8.1190 -3.1574 -0.0557 21 7 4.2307 -0.5762 1.3354 22 6 4.7064 0.1280 2.4090 23 1 5.0244 1.1526 2.2848 24 6 4.7799 -0.4750 3.6572 25 7 4.3920 -1.7235 3.8088 26 14 5.4282 0.4860 5.1221 27 1 4.3015 1.1780 5.7980 28 1 6.0805 -0.4464 6.0763 29 1 6.4181 1.4903 4.6563 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.2127 2.3203 0.0002 34 1 1.3339 4.5114 0.0011 35 1 3.7920 4.6381 0.0014 36 1 5.1343 2.5753 0.0086 37 1 6.0832 1.1241 0.2803 38 1 5.7241 0.7164 -1.4148 39 1 6.1224 -1.6872 0.0140 40 1 10.4787 -1.0244 -1.0670 41 1 11.8545 -3.0845 -0.8602 42 1 10.7511 -5.1841 -0.1229 43 1 8.3379 -5.1740 0.3721 44 1 3.8785 -1.4714 1.4600 45 1 4.4430 -2.1448 4.6810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198492610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 13.712775 kcal Electronic energy + Delta-G solvation = -29435.261009 eV Core-core repulsion = 25418.943295 eV Total energy + Delta-G solvation = -4016.317714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36958 -39.83994 -38.54000 -37.14908 -35.75333 -33.46705 -32.51180 -31.87340 -31.26079 -29.87393 -29.46381 -27.52927 -26.67447 -24.82173 -23.84487 -23.35678 -22.50068 -21.51482 -20.27649 -19.78845 -17.91290 -17.68395 -17.11446 -16.56986 -15.94615 -15.66481 -15.51722 -15.23285 -15.05520 -14.83188 -14.72969 -14.50610 -13.99766 -13.90747 -13.54900 -13.31743 -13.20364 -13.05124 -12.78394 -12.58928 -12.19888 -11.92868 -11.83908 -11.61465 -11.51822 -10.88504 -10.83694 -10.72112 -10.48960 -10.43227 -9.97686 -9.95906 -9.93824 -9.64505 -9.33141 -9.16411 -8.92950 -8.39496 -8.34822 -7.65545 -6.96069 -5.72764 -3.02021 0.75957 1.24625 1.81207 1.94331 3.07113 3.45837 3.51813 3.53117 3.59094 3.73227 4.07189 4.24513 4.35630 4.65002 4.77438 4.94847 4.98714 5.09054 5.15567 5.19131 5.34374 5.42582 5.43547 5.51174 5.59021 5.68529 5.73462 5.74395 5.78108 5.88788 5.95568 5.98390 6.05312 6.09906 6.13573 6.42606 6.49124 6.60097 6.66578 6.77614 6.89518 7.03375 7.09343 7.27159 7.77753 7.79776 7.88654 8.18684 8.43338 8.69984 9.57013 10.07372 10.44507 11.48852 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.003741 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.539557 B = 7483.221764 C = 8475.832395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.145 3.855 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.094 4.094 9 C 0.208 3.792 10 H 0.073 0.927 11 C 0.106 3.894 12 N -0.675 5.675 13 C 0.563 3.437 14 O -0.552 6.552 15 C 0.090 3.910 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.159 4.159 19 C 0.099 3.901 20 N -0.449 5.449 21 N -0.703 5.703 22 C -0.229 4.229 23 H 0.069 0.931 24 C -0.006 4.006 25 N -0.927 5.927 26 Si 0.897 3.103 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.415 0.585 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.162 0.838 44 H 0.388 0.612 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -1.152 -11.559 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.214 6.214 3 C 0.099 3.901 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.098 4.098 9 C 0.096 3.904 10 H 0.091 0.909 11 C -0.020 4.020 12 N -0.324 5.324 13 C 0.347 3.653 14 O -0.431 6.431 15 C -0.049 4.049 16 C -0.139 4.139 17 C -0.112 4.112 18 C -0.179 4.179 19 C -0.060 4.060 20 N -0.160 5.160 21 N -0.342 5.342 22 C -0.361 4.361 23 H 0.087 0.913 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.729 3.271 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.179 0.821 44 H 0.223 0.777 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.591 -0.514 -11.462 11.583 hybrid contribution 0.637 0.062 1.258 1.411 sum 2.228 -0.452 -10.204 10.454 Atomic orbital electron populations 1.22949 0.79604 1.03380 1.00544 1.86158 1.20175 1.26755 1.88338 1.18748 0.91730 0.83894 0.95753 1.21085 0.99352 0.92633 1.10374 1.20738 0.94624 0.96468 0.99564 1.20949 0.93848 0.98132 1.04991 1.21042 1.00136 0.91211 0.97535 1.19925 0.90911 0.96752 1.02219 1.19145 0.90364 0.91154 0.89735 0.90934 1.22025 0.92918 0.87284 0.99782 1.45595 1.07617 1.14514 1.64633 1.17815 0.82459 0.86627 0.78412 1.90728 1.73084 1.30160 1.49158 1.21342 0.92516 0.92832 0.98196 1.22126 0.93738 0.99981 0.98070 1.21577 1.00450 0.92302 0.96844 1.22344 0.96539 0.99263 0.99773 1.22849 0.91200 0.96282 0.95699 1.67651 1.40051 0.98543 1.09775 1.42325 1.73478 1.17625 1.00733 1.19071 1.34276 0.95371 0.87348 0.91311 1.24652 1.02000 0.96045 0.97517 1.69652 1.53441 1.11466 1.22958 0.86337 0.78532 0.78934 0.83333 1.21880 1.21926 1.20780 0.93061 0.93470 0.88715 0.86294 0.86775 0.86661 0.85338 0.90896 0.92423 0.74701 0.83606 0.84399 0.84519 0.82122 0.77716 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.39 16 2 O -0.30 -5.33 9.82 -19.44 -0.19 -5.52 16 3 C 0.14 2.62 6.66 -39.22 -0.26 2.36 16 4 C -0.22 -3.39 9.04 -39.44 -0.36 -3.75 16 5 C -0.10 -1.42 10.04 -39.61 -0.40 -1.81 16 6 C -0.16 -2.51 10.04 -39.56 -0.40 -2.91 16 7 C -0.08 -1.42 8.80 -39.61 -0.35 -1.76 16 8 C -0.09 -1.79 4.74 -104.48 -0.49 -2.28 16 9 C 0.21 4.06 2.69 -69.08 -0.19 3.88 16 10 H 0.07 1.34 7.99 -51.93 -0.42 0.93 16 11 C 0.11 2.02 3.97 -4.04 -0.02 2.00 16 12 N -0.67 -13.05 5.38 -61.15 -0.33 -13.38 16 13 C 0.56 10.88 7.81 -12.18 -0.10 10.79 16 14 O -0.55 -11.61 16.32 5.35 0.09 -11.52 16 15 C 0.09 1.51 6.75 -83.01 -0.56 0.95 16 16 C -0.12 -1.63 9.63 -39.05 -0.38 -2.01 16 17 C -0.09 -0.91 10.17 -39.31 -0.40 -1.31 16 18 C -0.16 -1.61 10.11 -39.32 -0.40 -2.00 16 19 C 0.10 1.25 11.18 -17.56 -0.20 1.05 16 20 N -0.45 -7.32 9.54 -9.80 -0.09 -7.42 16 21 N -0.70 -16.57 4.72 -54.55 -0.26 -16.83 16 22 C -0.23 -6.11 8.78 -15.06 -0.13 -6.25 16 23 H 0.07 1.85 7.06 -52.49 -0.37 1.48 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 26 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 31 H 0.05 0.50 7.66 -51.92 -0.40 0.10 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 1.57 6.30 -52.48 -0.33 1.24 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.13 2.20 5.83 -52.49 -0.31 1.90 16 37 H 0.07 1.53 5.89 -51.93 -0.31 1.22 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.42 8.20 7.47 -40.82 -0.30 7.90 16 40 H 0.15 1.91 7.64 -52.49 -0.40 1.51 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.39 9.89 8.04 -40.82 -0.33 9.56 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -33.25 381.89 -8.70 -41.95 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -5.65 Total: 17.63 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.72 Total: -1.94 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.04 Total: -64.19 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.10 Total: -17.04 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.25 -8.70 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.658 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds