Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99648 * 2 1 4 4 C 1.38745 * 120.05708 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94733 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05139 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11033 * 359.74292 * 6 5 4 8 8 C 1.38158 * 120.05570 * 0.50967 * 7 6 5 9 9 C 1.50697 * 120.02728 * 179.76657 * 8 7 6 10 10 H 1.09005 * 109.47238 * 224.24179 * 9 8 7 11 11 C 1.53003 * 109.47516 * 344.24193 * 9 8 7 12 12 N 1.46493 * 109.47242 * 175.00010 * 11 9 8 13 13 C 1.34781 * 119.99999 * 180.02562 * 12 11 9 14 14 O 1.21517 * 119.99680 * 0.02562 * 13 12 11 15 15 C 1.48166 * 120.00168 * 179.97438 * 13 12 11 16 16 C 1.39312 * 119.72213 * 180.02562 * 15 13 12 17 17 C 1.38589 * 119.05765 * 179.97438 * 16 15 13 18 18 C 1.38624 * 118.48792 * 0.02562 * 17 16 15 19 19 C 1.38562 * 119.35469 * 0.27518 * 18 17 16 20 20 N 1.31523 * 120.89999 * 359.42498 * 19 18 17 21 21 N 1.46498 * 109.47059 * 104.24295 * 9 8 7 22 22 C 1.36929 * 120.00203 * 300.00150 * 21 9 8 23 23 H 1.08000 * 119.99921 * 4.93350 * 22 21 9 24 24 C 1.38812 * 120.00255 * 184.93958 * 22 21 9 25 25 N 1.31615 * 120.00066 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00210 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47201 * 89.99599 * 26 24 22 28 28 H 1.48498 * 109.47112 * 209.99906 * 26 24 22 29 29 H 1.48507 * 109.46669 * 329.99677 * 26 24 22 30 30 H 1.08993 * 109.47531 * 300.00180 * 1 2 3 31 31 H 1.09007 * 109.47073 * 60.00494 * 1 2 3 32 32 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.03091 * 359.95467 * 4 3 2 34 34 H 1.07995 * 119.98080 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.94214 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.96720 * 180.25752 * 7 6 5 37 37 H 1.09004 * 109.46446 * 55.00114 * 11 9 8 38 38 H 1.09004 * 109.46966 * 295.00510 * 11 9 8 39 39 H 0.96993 * 120.00343 * 359.97438 * 12 11 9 40 40 H 1.07997 * 120.46925 * 359.95528 * 16 15 13 41 41 H 1.08002 * 120.75312 * 180.02562 * 17 16 15 42 42 H 1.08001 * 120.32380 * 179.97438 * 18 17 16 43 43 H 1.07995 * 119.54553 * 179.69561 * 19 18 17 44 44 H 0.97006 * 119.99988 * 120.00433 * 21 9 8 45 45 H 0.97003 * 120.00400 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0048 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0016 10 1 3.8378 -0.6820 -0.7221 11 6 5.6968 0.3538 -0.3872 12 7 6.5221 -0.8510 -0.2722 13 6 7.8370 -0.7975 -0.5632 14 8 8.3380 0.2504 -0.9205 15 6 8.6719 -2.0159 -0.4464 16 6 10.0305 -1.9538 -0.7481 17 6 10.7986 -3.1017 -0.6337 18 6 10.1808 -4.2723 -0.2218 19 6 8.8233 -4.2626 0.0558 20 7 8.1190 -3.1574 -0.0557 21 7 4.2307 -0.5762 1.3354 22 6 4.7064 0.1280 2.4090 23 1 5.0244 1.1526 2.2848 24 6 4.7799 -0.4750 3.6572 25 7 4.3920 -1.7235 3.8088 26 14 5.4282 0.4860 5.1221 27 1 4.3015 1.1780 5.7980 28 1 6.0805 -0.4464 6.0763 29 1 6.4181 1.4903 4.6563 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.2127 2.3203 0.0002 34 1 1.3339 4.5114 0.0011 35 1 3.7920 4.6381 0.0014 36 1 5.1343 2.5753 0.0086 37 1 6.0832 1.1241 0.2803 38 1 5.7241 0.7164 -1.4148 39 1 6.1224 -1.6872 0.0140 40 1 10.4787 -1.0244 -1.0670 41 1 11.8545 -3.0845 -0.8602 42 1 10.7511 -5.1841 -0.1229 43 1 8.3379 -5.1740 0.3721 44 1 3.8785 -1.4714 1.4600 45 1 4.4430 -2.1448 4.6810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198492610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = -9.238303 kcal Electronic energy + Delta-G solvation = -29436.256243 eV Core-core repulsion = 25418.943295 eV Total energy + Delta-G solvation = -4017.312947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56254 -41.11207 -39.89968 -38.49622 -37.29651 -35.14778 -33.88859 -33.27354 -32.33642 -31.44498 -30.83516 -28.99083 -27.85982 -26.46004 -25.26911 -24.40157 -23.93613 -22.78364 -21.61749 -21.33617 -19.38252 -19.15797 -18.65338 -17.73007 -17.18565 -17.05711 -16.77983 -16.46467 -16.41840 -16.29359 -16.10673 -15.76427 -15.68302 -15.39033 -14.92266 -14.71555 -14.49811 -14.25580 -14.12971 -13.90240 -13.56254 -13.40406 -13.07869 -12.88857 -12.86454 -12.74567 -12.66993 -12.25165 -11.87646 -11.84274 -11.73970 -11.60076 -11.37320 -10.94166 -10.92664 -10.45394 -10.25457 -9.89141 -9.70640 -9.08265 -8.83531 -7.87952 -5.14433 -0.30833 0.30839 0.51465 0.65627 1.41400 1.42423 1.49284 1.76242 2.21754 2.55499 2.57524 2.93108 2.95706 3.22545 3.44202 3.84306 3.87364 3.99507 4.01619 4.04742 4.09617 4.13362 4.24400 4.31930 4.37335 4.43464 4.44968 4.53194 4.60178 4.66019 4.75702 4.77753 4.80204 4.84271 5.08293 5.11381 5.16792 5.19580 5.44257 5.56433 5.59197 5.62372 5.68718 5.74408 6.02128 6.31351 6.50905 6.65586 6.88879 7.19690 7.40963 8.08726 8.37018 9.34270 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.003741 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.539557 B = 7483.221764 C = 8475.832395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.126 3.874 4 C -0.217 4.217 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.214 3.786 10 H 0.078 0.922 11 C 0.117 3.883 12 N -0.680 5.680 13 C 0.556 3.444 14 O -0.580 6.580 15 C 0.051 3.949 16 C -0.124 4.124 17 C -0.077 4.077 18 C -0.135 4.135 19 C 0.083 3.917 20 N -0.485 5.485 21 N -0.706 5.706 22 C -0.206 4.206 23 H 0.063 0.937 24 C -0.064 4.064 25 N -0.958 5.958 26 Si 0.946 3.054 27 H -0.291 1.291 28 H -0.297 1.297 29 H -0.280 1.280 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.145 0.855 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.184 0.816 44 H 0.377 0.623 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -0.989 -12.257 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.107 4.107 6 C -0.183 4.183 7 C -0.113 4.113 8 C -0.128 4.128 9 C 0.105 3.895 10 H 0.096 0.904 11 C -0.009 4.009 12 N -0.328 5.328 13 C 0.342 3.658 14 O -0.461 6.461 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.154 4.154 19 C -0.077 4.077 20 N -0.197 5.197 21 N -0.344 5.344 22 C -0.339 4.339 23 H 0.081 0.919 24 C -0.257 4.257 25 N -0.609 5.609 26 Si 0.778 3.222 27 H -0.218 1.218 28 H -0.224 1.224 29 H -0.206 1.206 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.163 0.837 41 H 0.198 0.802 42 H 0.201 0.799 43 H 0.201 0.799 44 H 0.209 0.791 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.097 -0.309 -12.202 12.385 hybrid contribution 0.473 -0.019 1.343 1.424 sum 2.570 -0.328 -10.859 11.164 Atomic orbital electron populations 1.23229 0.77315 1.04900 1.01735 1.86112 1.22699 1.27065 1.88435 1.18983 0.91737 0.84975 0.96245 1.21445 1.00735 0.92090 1.09274 1.21205 0.94552 0.97561 0.97336 1.21281 0.94503 0.98383 1.04103 1.21133 1.00193 0.91797 0.98206 1.19836 0.91629 0.96415 1.04906 1.19191 0.90663 0.91937 0.87732 0.90435 1.21874 0.92312 0.86834 0.99869 1.45659 1.08048 1.14217 1.64904 1.18373 0.82432 0.87566 0.77411 1.90680 1.73486 1.31476 1.50456 1.21045 0.93419 0.92264 1.01879 1.22280 0.92781 1.01514 0.97915 1.22070 1.02083 0.90945 0.95172 1.22842 0.95491 1.00730 0.96383 1.23417 0.92778 0.95850 0.95628 1.67527 1.41731 0.99413 1.11018 1.42315 1.73309 1.17062 1.01703 1.19187 1.31789 0.94924 0.87970 0.91856 1.25215 1.03868 0.96970 0.99641 1.69774 1.55723 1.12603 1.22765 0.85534 0.77917 0.77755 0.81011 1.21811 1.22415 1.20601 0.92900 0.91041 0.87243 0.83605 0.83071 0.84109 0.85967 0.93092 0.91149 0.75108 0.83691 0.80189 0.79913 0.79933 0.79053 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.67 16 2 O -0.33 -11.66 9.82 -92.47 -0.91 -12.57 16 3 C 0.13 4.55 6.66 22.50 0.15 4.70 16 4 C -0.22 -6.37 9.04 22.36 0.20 -6.16 16 5 C -0.09 -2.37 10.04 22.25 0.22 -2.14 16 6 C -0.16 -4.85 10.04 22.28 0.22 -4.63 16 7 C -0.09 -3.35 8.80 22.25 0.20 -3.15 16 8 C -0.12 -4.80 4.74 -19.77 -0.09 -4.90 16 9 C 0.21 8.76 2.69 44.25 0.12 8.88 16 10 H 0.08 3.03 7.99 -2.38 -0.02 3.01 16 11 C 0.12 4.70 3.97 86.38 0.34 5.04 16 12 N -0.68 -27.92 5.38 -465.65 -2.50 -30.42 16 13 C 0.56 22.71 7.81 86.88 0.68 23.39 16 14 O -0.58 -25.63 16.32 -3.77 -0.06 -25.69 16 15 C 0.05 1.77 6.75 41.91 0.28 2.05 16 16 C -0.12 -3.36 9.63 22.61 0.22 -3.14 16 17 C -0.08 -1.39 10.17 22.45 0.23 -1.16 16 18 C -0.13 -2.24 10.11 22.44 0.23 -2.01 16 19 C 0.08 1.97 11.18 84.82 0.95 2.91 16 20 N -0.48 -16.14 9.54 -184.91 -1.76 -17.91 16 21 N -0.71 -34.67 4.72 -326.51 -1.54 -36.21 16 22 C -0.21 -11.33 8.78 84.03 0.74 -10.59 16 23 H 0.06 3.51 7.06 -2.91 -0.02 3.49 16 24 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 25 N -0.96 -58.08 13.06 21.65 0.28 -57.80 16 26 Si 0.95 48.01 29.55 68.60 2.03 50.03 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 29 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 30 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 31 H 0.07 1.36 7.66 -2.38 -0.02 1.35 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.15 3.39 6.30 -2.91 -0.02 3.37 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.12 4.36 5.83 -2.91 -0.02 4.34 16 37 H 0.05 2.26 5.89 -2.39 -0.01 2.25 16 38 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 39 H 0.41 17.39 7.47 -92.71 -0.69 16.69 16 40 H 0.15 3.83 7.64 -2.91 -0.02 3.80 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.38 20.09 8.04 -92.70 -0.75 19.35 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -75.83 381.89 1.40 -74.43 By element: Atomic # 1 Polarization: 49.03 SS G_CDS: -0.39 Total: 48.64 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.26 Total: 7.49 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -5.53 Total: -142.34 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.97 Total: -38.26 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -75.83 1.40 -74.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198492610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.189 kcal (2) G-P(sol) polarization free energy of solvation -75.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds